genome.fa.s13.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  103  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34774464--34774488	13	1.9	13	100	0	50	28	0	0	72	0.86
34774696--34774731	14	2.7	13	87	8	54	75	0	0	25	0.81
34775380--34775416	9	4.1	9	92	0	65	45	13	10	29	1.77
34776203--34776227	5	5.0	5	100	0	50	20	20	20	40	1.92
34779045--34779211	68	2.5	68	85	0	226	26	20	15	37	1.92
34782072--34782242	89	1.9	89	86	0	243	29	20	18	31	1.96
34782205--34782435	95	2.5	93	79	4	261	27	19	18	34	1.95
34782041--34783241	44	26.6	44	73	10	660	29	19	17	33	1.95
34782533--34783241	89	7.9	89	76	7	594	29	19	16	34	1.94
34791144--34791194	19	2.7	19	88	8	70	43	5	19	31	1.75
34792972--34793018	9	5.8	8	82	9	51	59	2	4	34	1.29
34814139--34814173	18	1.9	18	100	0	70	57	17	2	22	1.53
34830410--34830460	26	2.0	26	84	7	68	27	11	11	49	1.74
34832345--34832380	2	18.0	2	100	0	72	50	0	50	0	1.00
34835509--34835698	102	1.9	102	84	0	254	40	15	12	32	1.84
34837879--34837917	14	2.8	14	84	0	60	12	17	0	69	1.19
34841220--34841254	4	8.8	4	93	0	61	45	0	25	28	1.54
34842584--34842652	16	4.3	16	79	0	75	44	4	27	23	1.72
34842769--34842828	23	2.7	22	90	7	79	56	0	3	40	1.16
34842777--34842828	23	2.3	23	96	3	97	57	0	3	38	1.17
34846431--34846466	18	1.9	19	88	5	56	66	0	25	8	1.19
34854479--34854605	67	1.9	67	96	0	236	37	19	9	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855242--34855271	15	2.1	15	93	6	53	53	26	0	20	1.46
34858326--34858382	19	2.7	22	84	10	66	36	8	15	38	1.79
34860220--34860259	14	2.9	14	84	0	53	32	7	17	42	1.77
34860243--34860282	20	2.0	20	90	0	62	27	10	12	50	1.72
34860228--34860294	34	1.9	35	90	3	109	31	8	13	46	1.74
34862657--34862705	6	8.2	6	93	0	71	38	0	61	0	0.96
34862655--34862708	17	3.1	17	86	2	72	44	0	55	0	0.99
34871570--34871647	11	7.4	11	72	17	58	61	0	3	34	1.14
34871550--34871677	51	2.4	52	88	3	177	63	0	3	32	1.16
34872698--34873943	630	2.0	630	87	2	1807	35	15	10	37	1.83
34877556--34877602	4	11.8	4	90	0	76	25	2	21	51	1.59
34881887--34881942	22	2.6	21	91	5	85	66	0	1	32	1.03
34881883--34881933	22	2.3	22	100	0	102	62	0	0	37	0.95
34886883--34887008	59	2.2	58	85	1	162	26	18	11	42	1.85
34898125--34898162	18	2.1	18	95	0	67	21	15	34	28	1.94
34907483--34907541	23	2.5	23	86	5	73	20	25	18	35	1.95
34907593--34907643	26	2.0	26	84	0	66	27	15	19	37	1.92
34907715--34907774	26	2.3	26	80	11	70	15	15	21	48	1.81
34910983--34911086	51	2.0	51	100	0	208	39	17	9	33	1.82
34911849--34911882	9	3.8	9	92	0	50	29	8	14	47	1.75
34911937--34911967	9	3.4	9	90	0	53	38	22	12	25	1.90
34912027--34912061	16	2.2	16	89	0	52	25	31	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34913146--34913189	21	2.1	21	100	0	88	40	40	9	9	1.68
34917370--34917420	27	1.9	27	84	11	70	60	15	15	7	1.56
34920677--34920742	28	2.4	28	73	16	66	39	3	4	53	1.37
34920723--34920761	20	2.0	20	85	5	53	41	2	5	51	1.38
34923587--34923632	18	2.5	18	85	3	56	34	15	15	34	1.89
34923672--34923708	9	4.1	9	92	0	65	45	13	10	29	1.77
34924828--34924875	24	2.0	24	88	4	71	33	20	29	16	1.95
34927009--34927068	22	2.8	21	85	12	77	28	3	3	65	1.25
34928215--34928273	29	2.0	29	93	0	100	38	3	3	54	1.34
34939740--34939782	18	2.4	18	88	0	59	39	11	27	20	1.88
34941593--34941657	30	2.2	30	91	0	103	38	3	29	29	1.72
34945312--34945356	23	2.0	23	82	4	56	64	2	0	33	1.06
34946300--34946330	8	3.9	8	95	0	53	35	0	9	54	1.33
34951283--34951364	41	2.0	41	92	0	137	30	6	14	48	1.68
34959795--34959866	3	24.0	3	80	5	83	37	30	1	30	1.66
34961031--34961074	9	4.9	9	81	8	54	63	2	0	34	1.07
34969285--34969309	12	2.1	12	100	0	50	32	16	0	52	1.44
34970032--34970077	9	5.1	9	94	0	83	45	13	10	30	1.77
34984410--34984440	16	1.9	16	93	0	53	25	22	16	35	1.94
34985036--34985099	31	2.1	31	93	0	110	37	15	10	35	1.83
34993091--34993140	9	5.6	9	81	9	57	64	0	2	34	1.05
34993081--34993118	19	2.0	20	84	5	51	71	2	0	26	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34992988--34993118	10	13.1	10	65	17	58	64	3	1	30	1.17
34993555--34993744	10	20.0	9	64	16	71	33	3	4	57	1.37
34993803--34993847	22	2.0	22	100	0	90	22	17	17	42	1.89
34996896--34997063	92	1.8	92	89	1	264	29	7	20	42	1.80
35004557--35004691	67	2.0	68	98	1	263	40	8	14	37	1.77
35013047--35013139	44	2.1	45	86	6	127	32	6	29	32	1.83
35013322--35013362	15	2.8	15	82	10	50	53	2	0	43	1.13
35013541--35013588	26	1.9	25	84	16	64	52	2	0	45	1.12
35020805--35020840	6	6.0	6	86	0	54	36	13	16	33	1.89
35028922--35028953	3	10.7	3	100	0	64	68	0	0	31	0.90
35029652--35029758	46	2.3	46	84	4	137	42	7	9	40	1.65
35033228--35033278	24	2.1	25	85	3	68	66	3	0	29	1.09
35033584--35033613	15	2.0	15	93	0	51	13	6	10	70	1.34
35040550--35041682	132	8.6	132	85	3	1467	29	18	22	28	1.98
35040552--35041682	265	4.3	263	87	2	1502	29	18	22	28	1.98
35046690--35047173	241	2.0	242	99	0	961	41	8	7	42	1.63
35047900--35047983	42	2.0	42	97	0	159	48	19	13	19	1.80
35052906--35052940	16	2.2	16	89	0	52	45	22	8	22	1.79
35063528--35063594	33	2.0	34	94	2	118	40	23	8	26	1.84
35076226--35076385	48	3.3	48	93	1	259	20	15	15	50	1.79
35080632--35080663	2	16.0	2	100	0	64	50	0	0	50	1.00
35080738--35080772	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35081489--35081530	3	14.0	3	100	0	84	66	0	0	33	0.92
35087465--35087498	14	2.4	14	90	9	52	29	8	0	61	1.26
35088949--35089025	34	2.3	34	79	4	84	12	14	10	62	1.55
35093845--35093878	13	2.6	13	100	0	68	35	5	38	20	1.77
35102190--35102221	3	10.7	3	100	0	64	34	0	0	65	0.93
35104147--35104189	18	2.4	18	88	7	61	53	0	0	46	1.00
35105565--35105996	132	3.3	131	79	6	441	33	13	28	24	1.94
35114053--35114132	28	2.9	28	90	0	124	32	12	13	41	1.82
35116327--35116390	21	3.0	21	81	0	83	15	26	17	40	1.89
35123423--35123456	17	2.0	17	94	0	59	32	5	11	50	1.63
35124582--35124621	21	2.0	21	90	5	64	25	15	12	47	1.80
35125768--35125813	20	2.4	18	82	13	56	71	2	15	10	1.23
35125968--35126074	53	2.0	53	87	3	153	59	2	5	31	1.35
35126046--35126083	19	2.0	19	89	0	58	55	5	7	31	1.51
35126004--35126074	24	2.7	25	76	16	81	60	4	5	29	1.38
35132729--35132821	31	3.0	31	80	4	116	33	19	6	40	1.77
35150800--35150846	24	2.0	24	100	0	94	46	8	8	36	1.65
35153666--35153773	40	2.7	40	91	0	162	35	23	22	19	1.96
35169234--35169301	9	7.6	9	72	16	52	61	1	4	32	1.24
35172452--35172523	26	2.8	26	89	6	103	15	5	38	40	1.70
35172452--35172521	14	5.4	13	75	17	65	15	5	40	38	1.71
35174253--35174306	24	2.2	25	83	6	65	48	1	3	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35174288--35174327	16	2.5	16	91	0	62	47	2	7	42	1.45
35174400--35174427	9	3.1	9	100	0	56	32	0	10	57	1.33
35174316--35174459	68	2.2	66	96	2	261	40	4	9	46	1.55
35175486--35175542	29	2.0	29	82	6	71	45	3	1	49	1.29
35181190--35181220	15	2.1	15	100	0	62	41	12	19	25	1.87
35182775--35182815	20	2.0	20	95	0	73	39	9	2	48	1.49
35200176--35200245	16	4.4	16	92	0	95	32	37	0	30	1.58
35202427--35202501	35	2.1	35	80	4	80	34	14	12	38	1.83
35203880--35203936	24	2.3	24	84	6	78	24	8	15	50	1.72
35204896--35205026	66	2.0	66	96	0	244	30	11	22	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145