genome.fa.s13.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  98  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33323771--33323844	34	2.1	35	85	9	98	37	20	9	32	1.85
33324382--33324630	76	3.2	76	74	9	211	40	18	4	36	1.72
33327332--33327380	26	2.0	24	84	8	62	61	4	2	32	1.26
33332081--33332117	19	1.9	19	100	0	74	54	0	24	21	1.45
33333995--33334073	40	2.0	39	87	2	113	24	12	21	41	1.87
33336543--33336598	27	2.1	27	83	6	69	26	5	12	55	1.58
33336661--33336709	20	2.5	20	75	18	57	40	6	18	34	1.75
33339945--33340226	43	6.6	43	82	5	279	31	25	18	23	1.97
33340139--33340226	41	2.1	42	89	6	135	36	29	14	19	1.92
33347319--33347361	19	2.3	19	80	11	52	65	4	4	25	1.32
33347480--33347571	40	2.3	39	81	7	103	19	19	23	36	1.95
33348336--33348373	20	1.9	20	84	10	51	73	0	5	21	1.02
33355149--33355234	23	3.5	23	68	20	75	32	19	4	43	1.72
33355152--33355258	51	2.1	51	96	0	196	36	18	5	39	1.75
33355375--33355473	51	1.9	51	89	0	153	35	32	8	24	1.85
33362047--33362095	19	2.5	19	76	3	53	44	8	32	14	1.74
33363678--33363723	16	2.8	16	84	15	67	71	0	2	26	0.97
33370225--33370271	24	2.0	24	84	16	62	59	4	27	8	1.45
33380708--33380751	20	2.2	20	83	0	52	27	27	13	31	1.94
33381483--33381525	5	8.4	5	97	2	77	18	2	0	79	0.85
33386140--33386194	27	2.0	27	85	0	74	38	18	23	20	1.93
33386332--33386415	27	3.1	27	83	5	107	23	11	22	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33398077--33398119	22	2.0	22	86	9	61	30	9	2	58	1.42
33400021--33400069	24	2.1	24	92	3	82	34	26	24	14	1.94
33402670--33402721	15	3.5	15	76	10	61	13	13	44	28	1.82
33405809--33405991	29	6.3	29	83	0	213	23	28	12	36	1.90
33405807--33405986	87	2.1	87	91	0	288	23	28	11	36	1.90
33407856--33408085	43	5.3	43	87	0	325	30	30	18	20	1.96
33408286--33408345	18	3.4	18	64	13	52	40	10	6	43	1.64
33410916--33410982	21	3.1	21	78	6	64	35	44	1	17	1.58
33411209--33411241	14	2.3	15	94	5	59	36	27	0	36	1.57
33412004--33412286	41	6.9	41	90	0	440	27	27	22	21	1.99
33420736--33420763	12	2.3	12	100	0	56	35	14	10	39	1.81
33420770--33420886	13	9.1	13	72	15	73	23	13	9	53	1.68
33420824--33420887	23	2.7	22	79	11	65	20	14	10	54	1.69
33422784--33422996	115	1.9	113	90	5	340	31	12	22	33	1.91
33426551--33426596	24	1.9	24	86	8	67	69	2	2	26	1.11
33434500--33434535	18	1.9	18	88	5	54	61	2	0	36	1.11
33439874--33439899	2	13.0	2	100	0	52	50	0	0	50	1.00
33444336--33444377	7	6.0	7	81	8	50	45	14	0	40	1.45
33475360--33475398	19	2.1	19	85	4	53	51	2	0	46	1.14
33475478--33475935	234	2.0	234	99	0	900	37	7	10	44	1.67
33483253--33483300	6	8.0	6	88	0	69	64	0	18	16	1.29
33483254--33483300	18	2.6	18	89	0	76	65	0	17	17	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33483446--33483520	26	2.9	26	78	9	82	42	12	13	32	1.80
33485078--33485130	27	2.0	27	88	0	79	32	13	7	47	1.70
33485149--33485181	17	1.9	18	88	11	52	42	3	12	42	1.57
33487425--33487546	57	2.1	57	81	4	147	45	5	22	27	1.75
33500648--33500688	19	2.1	20	86	4	57	31	9	2	56	1.45
33501157--33501212	25	2.3	25	82	14	73	30	5	0	64	1.16
33501157--33501211	26	2.1	27	86	10	78	29	5	0	65	1.15
33501166--33501219	26	2.1	25	86	3	72	35	3	0	61	1.14
33501176--33501233	26	2.2	26	81	6	64	39	5	1	53	1.33
33502229--33502272	18	2.4	18	100	0	88	43	11	27	18	1.84
33510478--33510584	46	2.2	49	86	9	148	26	9	21	42	1.83
33510436--33510706	116	2.3	116	92	6	438	26	11	20	42	1.85
33510599--33510752	52	3.1	52	92	5	248	24	9	22	44	1.81
33510478--33510868	168	2.4	167	93	4	670	26	10	20	42	1.84
33510646--33510907	116	2.3	116	97	0	506	26	10	20	42	1.84
33515571--33515680	45	2.6	44	84	8	140	32	29	4	33	1.78
33515659--33515696	16	2.4	16	90	0	58	34	34	0	31	1.58
33515810--33515861	24	2.2	24	92	0	86	51	7	1	38	1.42
33518254--33518356	14	7.3	13	70	14	62	29	5	3	61	1.37
33518410--33518465	22	2.5	22	82	0	85	30	8	1	58	1.39
33518423--33518461	12	3.4	12	79	13	55	30	7	2	58	1.39
33518598--33518653	30	1.9	30	88	3	87	30	12	3	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33523774--33523829	9	6.3	9	80	19	73	80	8	0	10	0.91
33523774--33523829	16	3.2	17	81	16	69	80	8	0	10	0.91
33523773--33523829	19	3.1	18	79	18	64	80	8	0	10	0.90
33523771--33523829	18	3.3	19	84	15	81	77	10	0	11	0.98
33523774--33523822	25	1.9	25	87	4	71	81	8	0	10	0.87
33524704--33524735	8	4.1	8	92	8	57	75	0	12	12	1.06
33524704--33524744	15	2.8	15	92	3	66	70	0	14	14	1.16
33525947--33526085	45	3.1	45	74	10	149	31	21	23	23	1.98
33526095--33526557	50	9.3	50	86	0	622	33	20	19	27	1.96
33526104--33526557	100	4.5	100	92	0	712	33	20	19	26	1.96
33526095--33527692	200	7.9	200	87	4	1683	32	21	19	25	1.97
33526573--33527554	50	19.7	50	81	3	1012	32	22	19	25	1.97
33526099--33527467	150	8.9	159	82	5	1107	32	21	19	25	1.97
33526576--33527737	100	11.6	100	89	2	1335	32	22	20	24	1.98
33526568--33527737	50	23.4	50	77	4	894	32	22	20	24	1.97
33528000--33528457	132	3.5	132	92	1	724	30	19	24	25	1.98
33529999--33530101	14	7.3	13	70	14	62	29	5	3	61	1.37
33530155--33530210	22	2.5	22	82	0	85	30	8	1	58	1.39
33530168--33530206	12	3.4	12	79	13	55	30	7	2	58	1.39
33530343--33530398	30	1.9	30	88	3	87	30	12	3	53	1.55
33531192--33531232	21	2.0	21	95	4	75	43	12	4	39	1.63
33531296--33531325	6	5.0	6	100	0	60	16	0	33	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33535024--33535131	34	3.2	32	75	8	117	40	0	16	42	1.48
33535202--33535466	126	2.1	126	86	4	365	36	14	17	30	1.90
33547286--33547326	2	20.5	2	100	0	82	0	48	0	51	1.00
33560611--33560757	41	3.6	41	88	1	206	31	19	25	23	1.97
33560734--33560785	26	2.0	26	84	0	68	21	17	30	30	1.96
33560801--33560909	41	2.6	43	73	7	116	23	14	24	36	1.93
33563805--33563921	41	2.8	42	80	7	114	37	24	17	20	1.93
33563805--33563947	42	3.4	42	78	4	146	37	23	17	22	1.94
33563929--33563978	26	1.9	26	88	8	75	28	32	18	22	1.97
33563955--33564102	41	3.6	40	83	5	199	22	23	19	33	1.97
33563888--33564014	67	1.9	68	84	11	172	30	24	18	26	1.98
33578168--33578243	9	8.4	9	81	5	91	38	22	11	27	1.89
33578168--33578243	18	4.2	18	86	0	107	38	22	11	27	1.89
33578346--33578389	18	2.4	18	88	0	61	13	2	43	40	1.57
33580054--33580105	26	2.0	26	100	0	104	23	15	15	46	1.83
33581035--33581068	14	2.5	14	90	4	52	14	0	32	52	1.42
33582556--33582673	57	2.1	58	85	1	157	45	5	19	29	1.71
33590935--33590978	20	2.2	20	88	11	65	70	4	4	20	1.23
33592534--33592681	39	3.8	39	75	3	138	37	19	15	27	1.92
33595373--33595423	16	3.2	16	94	0	84	35	5	35	23	1.79
33600582--33600974	121	3.3	121	99	0	770	51	4	0	43	1.27
33610954--33610991	16	2.4	16	91	4	60	10	0	36	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33610976--33611067	34	2.6	34	85	8	114	28	1	26	44	1.61
33611093--33611199	34	3.1	34	75	10	110	40	0	14	44	1.46
33611091--33611215	34	3.7	33	72	8	99	38	0	14	47	1.44
33611294--33611672	126	3.0	126	85	5	498	36	15	19	28	1.93
33614733--33614780	25	1.9	25	83	8	62	58	4	0	37	1.18
33614729--33614784	25	2.3	23	77	16	60	53	3	0	42	1.18
33615199--33615235	18	2.1	18	89	0	56	43	8	24	24	1.81
33616703--33616754	25	2.1	24	82	10	61	67	1	1	28	1.12
33620475--33620518	19	2.4	18	81	7	52	40	15	9	34	1.79
33622482--33622626	68	2.1	68	82	2	166	37	12	20	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145