genome.fa.s13.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  127  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41703116--41703446	164	2.0	165	99	0	655	41	9	10	38	1.71
41708747--41708788	22	1.9	22	95	0	75	42	0	16	40	1.48
41716551--41716591	10	3.8	10	84	15	55	48	12	2	36	1.54
41716546--41716590	14	3.3	14	84	3	56	48	15	2	33	1.57
41719446--41719492	4	11.8	4	95	0	85	48	25	2	23	1.62
41721998--41722028	15	2.0	16	93	6	55	35	6	0	58	1.24
41728060--41728126	31	2.2	31	86	5	91	41	7	16	34	1.76
41728660--41728697	18	2.1	19	85	5	51	52	21	0	26	1.47
41729794--41729878	30	2.8	30	80	7	100	4	28	18	48	1.68
41729839--41729878	15	2.7	15	80	0	53	5	22	20	52	1.65
41740689--41740731	19	2.2	20	83	8	52	53	2	9	34	1.46
41743653--41743986	166	2.0	167	99	0	661	48	5	5	40	1.51
41750239--41750290	21	2.4	22	80	6	61	3	30	3	61	1.32
41751515--41751566	21	2.4	22	80	6	61	3	30	3	61	1.32
41752795--41752827	2	16.5	2	93	0	57	51	3	0	45	1.16
41762549--41762772	111	2.0	111	96	0	412	27	11	19	41	1.85
41772536--41772569	1	34.0	1	100	0	68	100	0	0	0	0.00
41778135--41778202	31	2.2	31	91	0	109	44	10	11	33	1.75
41794669--41794748	25	3.2	24	85	7	106	35	18	23	22	1.96
41800534--41800575	21	2.0	21	100	0	84	23	14	28	33	1.94
41801560--41801642	42	2.0	42	100	0	166	30	12	19	38	1.88
41809663--41809702	19	2.1	19	90	0	62	55	5	17	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41810025--41810079	21	2.6	21	80	8	58	14	9	1	74	1.14
41814991--41815133	45	3.2	45	87	1	198	37	21	20	19	1.94
41821089--41821116	14	2.0	14	100	0	56	28	7	35	28	1.84
41823584--41823639	3	18.7	3	100	0	112	67	0	0	32	0.91
41827886--41827939	22	2.5	22	75	6	56	11	14	14	59	1.62
41827973--41828192	109	2.0	110	99	0	433	24	8	17	50	1.73
41830488--41830539	1	52.0	1	86	0	68	0	1	5	92	0.45
41830492--41830539	19	2.5	19	93	0	78	0	2	6	91	0.48
41830487--41830539	22	2.5	20	88	11	88	0	1	7	90	0.52
41830642--41830671	13	2.3	13	94	0	51	6	10	13	70	1.34
41830944--41831002	28	2.1	28	90	0	91	37	3	20	38	1.69
41831377--41831645	75	3.6	75	91	0	430	33	20	18	27	1.96
41832326--41832352	2	13.5	2	100	0	54	48	0	0	51	1.00
41836423--41836475	27	1.9	28	84	3	72	41	11	9	37	1.73
41838514--41838563	24	2.0	25	88	11	77	36	0	2	62	1.07
41843900--41844012	51	2.2	51	82	3	138	22	33	21	23	1.97
41844390--41844458	35	2.0	35	97	0	129	21	13	14	50	1.76
41844833--41844865	13	2.6	13	90	4	50	45	39	0	15	1.46
41845420--41845462	16	2.7	16	81	0	59	37	2	9	51	1.47
41846326--41846384	29	2.0	30	90	3	93	50	15	5	28	1.65
41850915--41850995	30	2.7	31	80	3	94	44	3	8	43	1.52
41856091--41856132	18	2.4	18	88	4	59	71	7	4	16	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41858222--41858782	51	10.9	52	78	10	489	30	28	16	24	1.97
41858750--41858819	36	1.9	36	85	5	97	27	28	17	27	1.97
41860800--41860834	6	5.8	6	93	0	52	8	0	37	54	1.31
41862037--41862098	13	4.8	13	72	4	54	32	6	24	37	1.81
41862037--41862098	26	2.4	26	78	5	72	32	6	24	37	1.81
41864129--41864180	27	1.9	27	100	0	104	61	5	25	7	1.45
41870680--41870727	24	1.9	26	87	8	73	14	14	2	68	1.30
41870991--41871035	23	1.9	24	82	13	58	75	11	0	13	1.05
41872594--41872687	27	3.2	27	66	25	73	32	15	6	44	1.72
41872576--41872718	62	2.3	62	100	0	286	34	15	6	43	1.74
41875650--41875684	17	2.1	17	88	0	52	77	5	2	14	1.07
41875662--41876183	155	3.4	155	92	2	809	55	8	8	27	1.59
41881001--41881402	199	2.0	200	99	0	797	45	17	4	33	1.68
41882836--41882903	30	2.2	30	84	2	82	48	7	17	26	1.73
41885429--41885882	226	2.0	227	99	0	901	31	20	10	37	1.86
41892861--41892902	22	1.9	22	85	9	59	0	23	14	61	1.32
41896825--41896867	22	2.0	21	82	17	52	72	2	9	16	1.21
41901763--41901806	22	2.0	22	100	0	88	22	9	31	36	1.86
41912304--41912348	21	2.2	21	84	4	56	6	42	0	51	1.28
41918364--41918399	6	6.0	6	93	0	63	30	0	16	52	1.44
41925789--41925953	61	2.7	58	82	9	186	29	18	10	41	1.85
41931741--41931805	29	2.3	28	76	7	69	46	1	4	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41933747--41934225	234	2.0	235	95	2	852	34	13	14	37	1.86
41937067--41937146	38	2.1	38	88	4	117	30	8	23	37	1.85
41944381--41944444	31	2.1	31	82	5	76	56	3	12	28	1.51
41949032--41949074	20	2.2	20	91	0	68	9	6	37	46	1.63
41950240--41950290	27	2.0	27	81	14	63	56	7	3	31	1.46
41950513--41950568	26	2.2	26	86	0	76	66	5	1	26	1.23
41950524--41950600	37	2.0	39	85	9	106	64	1	1	32	1.09
41955067--41955236	88	1.9	90	89	2	263	24	11	9	55	1.64
41955944--41956192	123	2.0	124	99	0	491	43	5	3	47	1.43
41959961--41960125	85	1.9	85	87	2	240	37	20	10	32	1.86
41960160--41960208	18	2.6	19	80	9	64	61	0	2	36	1.08
41960182--41960250	28	2.4	28	83	11	79	65	0	2	31	1.08
41960199--41960313	20	6.0	20	71	11	64	63	3	2	30	1.24
41968364--41968394	13	2.4	13	94	0	53	29	0	3	67	1.06
41969441--41969595	30	5.2	28	74	12	132	34	20	3	41	1.68
41969439--41969611	59	2.9	59	77	6	190	33	20	4	41	1.73
41969922--41969975	3	17.3	3	92	7	90	62	0	37	0	0.95
41970254--41970288	12	2.9	12	82	0	52	25	42	31	0	1.55
41970287--41970335	13	3.8	13	84	12	66	73	0	26	0	0.83
41970291--41970325	15	2.3	15	90	0	52	77	0	22	0	0.78
41970660--41970686	12	2.2	12	100	0	54	70	7	0	22	1.12
41970703--41970743	21	1.9	22	85	5	57	43	12	9	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41970898--41971377	18	26.9	18	70	11	283	32	11	8	47	1.70
41970884--41971205	88	3.6	88	92	0	527	34	13	8	44	1.73
41970884--41971261	176	2.1	178	88	3	559	33	12	8	45	1.73
41970885--41971335	88	5.1	87	86	5	498	32	11	9	46	1.72
41970949--41971368	35	11.8	34	67	13	145	32	10	8	48	1.69
41972500--41972529	5	6.0	5	92	0	51	20	3	0	76	0.92
41978919--41978974	19	3.0	19	85	12	64	55	8	1	33	1.42
41986508--41986584	18	4.2	18	71	15	59	40	2	1	55	1.22
41989517--41989657	24	5.7	25	71	8	83	15	25	20	38	1.92
41989621--41989667	24	2.0	24	91	0	76	19	23	19	38	1.93
41988756--41990619	932	2.0	932	100	0	3728	27	19	19	33	1.96
41990553--41990599	24	2.0	24	91	0	76	19	23	19	38	1.93
41992254--41992353	42	2.3	43	82	1	121	25	19	25	31	1.98
42010160--42010191	2	16.0	2	100	0	64	50	0	0	50	1.00
42020816--42020866	23	2.2	23	92	0	84	45	25	0	29	1.54
42032976--42033031	24	2.2	25	84	15	71	32	3	1	62	1.23
42032999--42033039	17	2.3	19	91	8	68	26	4	2	65	1.25
42034828--42034949	57	2.1	58	84	7	158	22	29	29	18	1.97
42039673--42039718	20	2.2	22	88	7	69	67	13	19	0	1.23
42043250--42043384	67	2.0	67	95	0	243	31	10	14	44	1.78
42049011--42049068	28	2.1	28	100	0	116	43	3	17	36	1.66
42050362--42050417	16	3.6	16	79	11	53	19	23	1	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42051522--42051566	23	1.9	23	82	13	56	15	8	40	35	1.79
42054820--42055397	23	22.7	23	69	23	217	29	0	22	46	1.58
42054828--42055889	28	38.3	28	70	21	590	30	0	22	46	1.58
42055276--42055310	17	2.0	18	88	5	54	31	0	20	48	1.50
42055350--42055384	17	2.0	18	88	5	54	31	0	20	48	1.50
42054841--42055732	303	3.0	303	91	5	1379	30	1	22	46	1.59
42055286--42055962	229	3.0	229	99	0	1347	31	0	21	46	1.57
42055579--42055613	17	2.0	18	88	5	54	31	0	20	48	1.50
42055808--42055842	17	2.0	18	88	5	54	31	0	20	48	1.50
42055743--42055960	69	3.1	69	88	7	296	31	0	20	46	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145