genome.fa.s13.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  102  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34492552--34492695	75	1.9	76	84	1	191	43	15	2	38	1.58
34492573--34492711	25	5.5	25	75	10	131	43	15	2	38	1.62
34492643--34492711	26	2.7	25	77	6	77	42	17	4	36	1.69
34498773--34498817	21	2.1	21	91	0	72	33	17	46	2	1.61
34506140--34506643	84	6.0	84	95	0	891	16	19	28	36	1.93
34507686--34507741	28	2.0	28	82	0	67	64	7	5	23	1.40
34507698--34507752	28	2.0	28	92	0	92	54	7	5	32	1.51
34509261--34509290	14	2.1	14	100	0	60	26	13	6	53	1.64
34509976--34510091	55	2.1	55	93	0	196	36	6	11	46	1.64
34511133--34511287	9	18.6	9	67	19	95	45	20	0	34	1.51
34511133--34511196	25	2.6	25	97	0	119	46	21	0	31	1.52
34510953--34511171	68	3.2	68	99	0	429	44	19	3	32	1.68
34510953--34511210	136	1.9	136	88	4	387	46	18	3	31	1.65
34511211--34511287	23	3.5	23	85	5	106	41	19	0	38	1.52
34516166--34516202	13	2.8	13	91	0	56	40	8	2	48	1.47
34519196--34519237	21	2.0	21	85	4	57	69	4	0	26	1.08
34522339--34522451	37	3.3	37	62	30	95	47	6	6	39	1.54
34522335--34522465	65	2.0	66	98	1	255	45	7	6	40	1.57
34522345--34522482	65	2.1	65	89	4	206	46	7	7	37	1.63
34526811--34526844	2	17.0	2	100	0	68	50	0	50	0	1.00
34538840--34538902	27	2.4	27	91	2	110	41	7	0	50	1.31
34539175--34539864	345	2.0	345	98	1	1339	31	13	23	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34543320--34543438	43	2.8	43	84	3	134	26	15	26	31	1.96
34543312--34543456	43	3.4	43	79	6	107	28	15	26	29	1.96
34547970--34548294	163	2.0	163	95	0	578	33	11	20	34	1.88
34552588--34552624	9	4.1	9	92	0	65	29	10	13	45	1.77
34552678--34552708	9	3.4	9	90	0	53	38	22	12	25	1.90
34567537--34567587	25	2.0	25	100	0	102	33	31	31	3	1.76
34568503--34568583	29	2.7	30	84	5	101	46	13	7	32	1.71
34569112--34569165	27	2.0	27	85	0	72	24	9	7	59	1.54
34569485--34569513	15	1.9	15	100	0	58	37	13	27	20	1.91
34573004--34573082	39	2.0	39	100	0	158	17	17	20	44	1.87
34574561--34574615	25	2.2	25	96	0	101	38	10	18	32	1.85
34578262--34578374	54	2.1	54	96	0	208	53	12	10	23	1.68
34580249--34580289	18	2.1	18	86	13	55	68	2	4	24	1.22
34590096--34590241	73	2.0	72	91	1	238	36	8	10	43	1.71
34590895--34591025	64	2.0	64	80	2	147	24	19	26	29	1.99
34598402--34598487	44	2.0	44	83	4	111	27	19	19	32	1.97
34598540--34599052	44	11.5	44	80	6	543	30	20	18	30	1.97
34608647--34608677	16	1.9	16	93	0	53	58	0	0	41	0.98
34612159--34612217	29	2.0	30	86	3	84	49	15	6	28	1.70
34615569--34615601	7	4.7	7	100	0	66	45	12	0	42	1.41
34617631--34617678	7	6.7	7	80	4	51	18	16	10	54	1.70
34618370--34618588	9	24.6	9	79	4	221	32	8	23	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34618370--34618588	107	2.0	107	94	3	388	32	8	23	34	1.86
34618979--34619072	49	1.9	49	95	0	170	24	25	7	42	1.80
34620406--34620456	26	2.0	26	100	0	102	19	25	31	23	1.98
34620365--34620497	67	2.0	67	93	0	230	28	21	25	24	1.99
34620432--34620667	41	5.7	41	76	12	178	26	18	24	30	1.98
34624235--34624274	3	13.3	3	100	0	80	65	0	0	35	0.93
34627867--34627901	6	5.7	6	93	3	52	60	2	0	37	1.12
34627904--34628104	100	2.0	101	99	0	395	33	20	6	38	1.80
34634485--34634630	45	3.2	45	89	3	222	18	18	21	41	1.91
34634614--34634656	6	6.8	6	83	2	50	18	20	16	44	1.87
34640449--34640520	20	3.6	20	75	5	65	54	5	0	40	1.24
34640449--34640510	18	3.3	19	77	4	63	53	4	0	41	1.22
34644747--34644788	21	2.0	21	90	4	68	2	26	0	71	0.98
34644863--34644895	13	2.6	13	90	4	50	57	0	3	39	1.14
34646520--34646560	20	2.1	19	90	4	64	34	4	14	46	1.66
34652835--34652978	42	3.4	42	81	4	164	26	14	27	31	1.95
34662132--34662174	23	1.9	23	85	4	61	34	2	0	62	1.08
34662927--34662970	22	2.0	22	82	8	54	22	11	4	61	1.48
34670146--34670349	96	2.1	98	96	3	385	38	6	12	42	1.70
34670738--34670776	9	4.0	9	81	18	51	56	0	0	43	0.99
34670742--34670778	7	5.3	7	100	0	74	56	0	0	43	0.99
34671373--34671554	54	3.4	55	71	21	186	26	9	11	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34671359--34671564	107	1.9	107	98	2	396	27	9	10	51	1.68
34672060--34672121	29	2.1	30	84	6	81	40	14	0	45	1.45
34673735--34673766	15	2.1	15	100	0	64	25	15	12	46	1.81
34679751--34679776	6	4.3	6	100	0	52	19	0	0	80	0.71
34681075--34681207	65	2.0	66	95	4	243	46	12	9	31	1.73
34682088--34682152	15	4.3	15	70	14	53	30	32	1	35	1.67
34690041--34690150	31	3.3	31	65	20	85	48	9	4	38	1.56
34690021--34690165	71	2.0	72	98	1	283	48	9	5	36	1.59
34690884--34691073	94	2.0	95	97	2	364	38	13	7	40	1.73
34691068--34691111	18	2.5	18	88	3	63	50	2	2	45	1.27
34693080--34693164	44	1.9	44	100	0	170	40	14	14	31	1.85
34697304--34697340	19	1.9	19	100	0	74	10	13	27	48	1.75
34698902--34698944	7	5.9	7	97	2	68	72	0	0	27	0.85
34698902--34698944	4	11.5	4	85	14	65	72	0	0	27	0.85
34698902--34698944	11	3.9	11	82	17	54	72	0	0	27	0.85
34701147--34701419	43	6.4	43	68	9	153	24	16	19	39	1.91
34701144--34701375	85	2.7	84	82	5	270	24	15	20	39	1.91
34707924--34707975	18	2.9	18	75	8	52	57	0	1	40	1.10
34715545--34715595	19	2.7	18	80	14	59	76	1	5	15	1.07
34715661--34715703	21	2.0	23	86	9	63	79	2	0	18	0.85
34720419--34720476	24	2.5	23	76	20	59	43	0	0	56	0.99
34721554--34721650	50	2.0	49	87	2	140	48	7	9	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34722202--34722254	26	2.1	25	82	10	63	66	7	0	26	1.18
34722207--34722256	20	2.5	20	79	17	52	68	6	0	26	1.13
34725772--34725817	16	2.7	17	83	10	58	36	4	0	58	1.18
34725822--34725862	21	2.0	21	85	0	55	12	0	29	58	1.34
34735990--34736066	32	2.4	32	80	6	84	18	35	24	22	1.96
34737328--34737411	41	2.0	43	90	4	136	54	17	10	16	1.70
34740675--34740892	71	3.1	70	61	18	155	44	15	15	24	1.85
34740497--34741007	140	3.6	140	92	3	801	42	14	17	26	1.87
34740642--34740856	69	3.1	69	62	17	172	41	15	16	26	1.88
34741456--34741548	14	6.4	15	77	13	63	36	40	0	22	1.54
34741476--34741524	7	6.9	7	76	4	53	32	46	0	20	1.51
34741451--34741548	22	4.5	22	72	7	67	35	42	0	21	1.53
34741764--34741851	14	6.1	15	75	13	62	35	43	0	21	1.53
34741779--34741827	7	6.9	7	76	4	53	32	46	0	20	1.51
34741790--34741851	22	2.9	22	82	2	63	37	45	0	17	1.49
34741408--34741967	303	1.8	303	94	2	973	41	29	2	26	1.68
34742145--34742254	41	2.7	41	86	0	148	26	30	21	20	1.98
34742227--34742398	72	2.4	72	87	1	229	25	25	23	25	2.00
34742299--34742510	113	1.9	113	94	0	379	28	26	21	23	1.99
34742635--34742670	17	2.1	18	90	10	58	58	0	2	38	1.13
34743116--34743232	22	5.2	22	81	10	71	37	23	1	36	1.66
34743128--34743232	22	4.8	21	81	11	113	34	25	1	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34746641--34746713	7	10.1	7	79	5	83	46	35	2	15	1.60
34749626--34749669	16	2.6	17	82	10	54	29	0	9	61	1.27
34749814--34749866	28	1.9	27	88	3	79	49	1	1	47	1.23
34751627--34751820	94	2.1	94	98	0	372	42	18	7	31	1.79
34753584--34753614	16	1.9	16	93	0	53	61	0	0	38	0.96
34765113--34765146	7	4.9	7	92	0	59	85	2	11	0	0.71
34766670--34766704	4	8.8	4	100	0	70	51	0	22	25	1.48
34771420--34771488	29	2.4	28	77	20	70	42	5	1	50	1.35
34773708--34773789	25	3.2	24	73	14	58	50	3	1	45	1.27
34773853--34773898	22	2.2	22	88	11	71	36	8	0	54	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145