genome.fa.s13.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  18  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6778521--6778560	14	2.9	14	84	0	53	42	17	7	32	1.77
6778486--6778552	34	1.9	35	87	3	100	44	13	10	31	1.77
6786624--6786659	18	2.0	18	100	0	72	38	5	0	55	1.23
6789447--6789507	17	3.4	17	70	12	59	31	3	14	50	1.59
6789442--6789516	37	2.0	37	100	0	150	33	5	16	45	1.69
6789515--6789545	9	3.4	9	95	0	53	25	9	22	41	1.84
6790560--6790612	13	4.1	13	80	0	52	33	0	20	45	1.52
6790563--6790612	26	1.9	26	87	0	73	36	0	20	44	1.52
6799980--6800011	12	2.8	12	90	9	50	87	0	12	0	0.54
6804495--6804531	10	4.2	9	80	19	51	64	0	0	35	0.94
6804494--6804529	16	2.2	17	95	5	65	63	0	0	36	0.94
6810915--6810958	22	2.0	22	81	0	52	77	2	15	4	1.04
6810921--6810958	11	3.5	11	89	7	51	81	0	15	2	0.80
6810927--6810959	11	2.9	12	91	8	52	78	0	21	0	0.75
6815212--6815265	7	7.6	7	82	17	67	70	0	14	14	1.17
6815212--6815262	14	3.6	14	87	12	77	72	0	13	13	1.12
6816514--6816910	41	9.6	42	66	15	130	28	19	22	29	1.98
6816519--6816788	124	2.2	124	93	0	450	28	19	22	29	1.98
6816690--6816868	80	2.2	80	93	0	304	26	18	23	30	1.98
6816566--6816989	204	2.1	206	94	2	744	28	18	22	30	1.97
6817748--6817975	76	3.0	76	100	0	456	31	9	7	51	1.63
6818715--6818744	16	1.9	16	93	6	53	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6819184--6819223	20	2.1	18	86	13	53	25	15	2	57	1.50
6819250--6819755	110	4.6	109	92	2	766	33	15	18	32	1.93
6819250--6819727	219	2.2	219	91	2	764	33	15	17	33	1.92
6822842--6822898	29	2.0	29	82	6	71	33	14	14	38	1.85
6842411--6842533	60	2.0	60	96	0	228	20	36	17	25	1.94
6849555--6849618	6	10.5	6	88	11	87	79	0	4	15	0.89
6866258--6866879	108	5.8	109	96	2	1091	36	14	16	31	1.90
6866253--6866879	323	1.9	323	94	3	1111	36	14	16	31	1.90
6866861--6867318	114	4.1	113	88	5	633	30	15	13	40	1.86
6869303--6869365	30	2.0	31	81	6	74	22	19	11	47	1.80
6877787--6877817	14	2.2	14	100	0	62	48	12	6	32	1.67
6880150--6880247	51	1.9	51	95	0	178	28	21	16	33	1.95
6881676--6881819	51	2.8	52	78	8	168	32	29	15	22	1.95
6885366--6885416	16	3.3	15	74	17	50	13	49	7	29	1.70
6891685--6891741	5	11.6	5	75	17	57	57	1	0	40	1.09
6898630--6898780	78	1.9	78	95	0	275	34	22	17	25	1.96
6901741--6901807	35	1.9	35	100	0	134	53	5	11	28	1.61
6903171--6903204	2	17.0	2	100	0	68	50	0	0	50	1.00
6904444--6904493	16	3.2	16	78	13	50	44	4	0	52	1.20
6906087--6906161	24	3.2	25	76	17	81	49	0	0	50	1.00
6906117--6906158	6	7.0	6	94	0	75	47	0	0	52	1.00
6907101--6907199	46	2.1	48	84	3	130	26	12	16	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6910863--6910905	18	2.4	18	84	0	50	4	41	25	27	1.75
6910874--6910918	18	2.5	18	81	0	54	6	44	22	26	1.77
6912537--6912576	16	2.6	15	92	7	71	57	5	0	37	1.21
6912967--6913020	13	4.1	13	76	9	56	1	20	0	77	0.86
6912965--6913022	14	4.2	13	75	14	53	1	22	0	75	0.89
6914867--6914894	2	14.0	2	100	0	56	50	0	0	50	1.00
6914930--6915079	75	2.0	75	98	0	291	40	19	2	37	1.66
6916323--6916462	44	3.3	41	76	10	122	31	25	16	27	1.96
6918283--6918483	43	4.7	43	89	0	294	27	15	24	32	1.96
6925160--6925185	10	2.6	10	100	0	52	30	0	19	50	1.48
6931056--6931145	44	2.0	46	82	8	114	36	3	3	56	1.32
6934663--6934705	22	1.9	22	90	4	68	41	13	4	39	1.66
6934661--6934756	19	4.8	19	83	8	111	38	14	8	38	1.76
6937306--6937330	11	2.3	11	100	0	50	0	0	8	92	0.40
6939555--6939600	24	1.9	24	90	0	74	13	23	17	45	1.83
6942481--6942553	19	3.8	19	87	0	110	36	13	8	41	1.75
6942458--6942553	38	2.4	39	84	6	122	39	13	7	39	1.72
6943414--6943472	31	2.0	30	83	6	75	47	15	5	32	1.67
6943835--6943877	22	2.0	22	95	0	77	9	20	27	41	1.83
6943985--6944120	43	3.2	44	76	11	129	20	21	27	30	1.98
6944004--6944148	43	3.4	43	82	9	170	18	20	26	34	1.96
6944071--6944168	43	2.3	43	81	0	106	23	25	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6944004--6944168	86	1.9	86	81	4	199	21	22	24	30	1.99
6963903--6964181	41	6.8	39	81	8	290	31	27	26	15	1.95
6963945--6964180	42	5.7	41	87	3	321	31	27	26	14	1.95
6963945--6964180	83	2.9	81	86	5	330	31	27	26	14	1.95
6968981--6969007	13	2.1	13	100	0	54	85	14	0	0	0.61
6970494--6970536	15	2.6	17	78	14	54	62	0	0	37	0.95
6980511--6980564	24	2.2	26	83	6	67	62	0	0	37	0.95
6981636--6981694	31	2.0	30	83	6	75	44	10	3	42	1.55
6986604--6986630	14	1.9	14	100	0	54	29	18	22	29	1.97
6993867--6994568	36	19.2	36	82	4	646	34	21	15	28	1.94
6993867--6994567	73	9.6	73	82	5	706	34	21	15	28	1.94
6993867--6994612	109	6.8	109	82	5	776	34	21	15	28	1.94
7000034--7000073	21	1.9	21	84	0	53	55	10	10	25	1.64
7000814--7000876	31	2.1	29	88	11	92	60	9	14	15	1.59
7001755--7001817	18	3.6	18	78	8	67	53	12	11	22	1.69
7001709--7001848	35	3.9	33	72	15	102	45	8	10	35	1.70
7001905--7001963	16	3.5	17	76	19	61	45	8	13	32	1.74
7001905--7001963	18	3.5	17	80	15	61	45	8	13	32	1.74
7001928--7001961	15	2.2	16	89	5	52	47	11	14	26	1.79
7002505--7002542	18	2.3	18	86	13	55	5	34	39	21	1.76
7002812--7002882	13	5.4	13	73	20	51	0	25	1	73	0.92
7002803--7002892	23	3.7	23	77	18	76	0	24	1	74	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7002802--7002890	24	3.5	26	76	17	80	0	24	1	74	0.89
7002827--7002898	13	5.8	13	72	18	57	0	26	0	73	0.83
7002802--7002892	27	3.5	26	75	20	84	0	24	1	74	0.88
7003046--7003089	21	2.0	23	86	8	65	6	22	43	27	1.78
7003115--7003198	13	6.5	13	82	10	93	0	23	0	76	0.79
7003112--7003202	23	3.9	23	80	18	82	0	24	0	75	0.80
7003116--7003201	27	3.2	27	83	8	113	0	24	0	75	0.80
7003711--7003961	30	8.4	30	78	8	244	37	1	24	36	1.65
7003720--7003958	59	4.1	58	80	3	271	37	1	25	35	1.64
7003709--7003958	89	2.8	89	81	4	281	38	1	24	35	1.65
7003703--7003961	119	2.2	119	98	0	500	37	2	25	35	1.69
7005839--7005993	76	2.0	77	98	1	303	45	5	6	42	1.52
7015204--7015248	18	2.8	16	81	15	56	28	0	15	55	1.41
7016286--7016597	42	7.4	42	91	3	425	30	20	23	25	1.99
7016309--7016597	127	2.3	127	88	5	426	29	21	24	24	1.99
7025424--7025530	18	6.1	18	76	19	118	43	0	12	43	1.41
7025416--7025559	39	3.8	37	80	12	141	43	1	11	43	1.49
7028123--7028741	114	5.4	114	90	0	945	25	27	22	24	2.00
7034582--7034628	24	2.0	23	84	12	60	65	8	6	19	1.41
7035455--7035739	84	3.3	84	73	12	290	29	24	19	27	1.99
7035455--7035739	44	6.6	44	71	10	180	29	24	19	27	1.99
7035431--7035744	173	1.8	172	92	0	529	28	22	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7035194--7035658	89	5.3	89	69	10	253	27	24	19	28	1.98
7036458--7036761	44	7.0	44	72	10	189	28	21	20	30	1.98
7036622--7037028	141	2.8	144	89	2	604	28	21	20	29	1.98
7053803--7053841	21	1.9	20	84	5	51	10	10	33	46	1.72
7055349--7055407	30	2.0	30	93	0	100	57	15	1	25	1.47
7056138--7056191	27	1.9	29	88	7	85	12	0	35	51	1.40
7056231--7056517	95	3.0	95	78	8	307	40	3	16	40	1.65
7056294--7056557	95	2.8	96	79	11	231	40	2	17	39	1.64
7056557--7056973	126	3.3	126	91	2	676	33	19	20	25	1.97
7062297--7062343	22	2.1	23	84	11	62	42	0	27	29	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145