genome.fa.s13.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  40  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14291189--14291304	62	1.9	59	84	8	153	43	2	3	50	1.33
14292903--14292940	19	2.0	19	100	0	76	31	26	10	31	1.90
14296922--14297007	45	1.9	45	85	0	118	44	12	19	23	1.85
14297042--14297279	74	3.2	74	86	2	334	33	16	21	28	1.95
14297293--14297382	27	3.3	27	80	0	108	38	17	23	20	1.93
14307213--14307260	23	2.1	23	100	0	96	29	4	16	50	1.64
14307217--14307268	23	2.5	21	84	12	54	28	1	15	53	1.52
14309259--14309284	6	4.3	6	100	0	52	34	0	65	0	0.93
14309689--14309729	20	2.0	20	95	0	73	41	9	7	41	1.66
14309780--14309810	6	5.2	6	92	0	53	64	0	3	32	1.09
14310961--14311003	20	2.2	20	100	0	86	18	27	13	39	1.89
14323900--14324190	124	2.4	122	82	2	350	30	18	8	42	1.80
14326105--14326181	36	2.2	36	90	4	122	29	16	18	35	1.93
14326422--14326468	24	2.0	24	86	0	67	48	12	4	34	1.61
14330830--14330881	24	2.2	24	85	0	68	50	7	3	38	1.50
14336299--14336333	15	2.2	17	90	10	56	31	2	5	60	1.35
14336408--14336605	45	4.5	44	82	6	188	39	17	18	24	1.92
14336541--14336697	45	3.5	44	75	11	120	45	14	20	20	1.85
14338333--14338414	42	2.0	42	82	0	101	25	21	26	25	2.00
14339680--14339769	17	5.2	17	71	12	67	28	31	22	17	1.97
14343442--14343472	4	7.8	4	100	0	62	25	0	22	51	1.48
14346903--14346929	14	1.9	14	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14352149--14352291	41	3.5	42	84	4	177	20	20	14	44	1.86
14352120--14352291	62	2.8	61	80	7	177	18	20	14	46	1.84
14352120--14352310	21	9.3	21	78	4	140	18	19	15	46	1.84
14352198--14352310	61	1.9	59	85	3	154	17	18	16	46	1.84
14354714--14354769	28	2.0	28	100	0	112	28	14	21	35	1.92
14364756--14365351	134	4.5	134	84	0	737	37	12	18	31	1.88
14364735--14365348	268	2.3	267	86	1	836	37	12	18	31	1.88
14370164--14370604	27	16.3	27	82	5	464	43	18	18	19	1.88
14376298--14376584	81	3.5	81	81	4	337	46	18	17	17	1.85
14376298--14376584	27	10.6	27	81	1	297	46	18	17	17	1.85
14387320--14387363	17	2.6	17	88	0	70	38	0	15	45	1.47
14391733--14391810	38	2.1	38	97	0	147	25	5	19	50	1.68
14395401--14395445	21	2.2	20	84	15	56	57	13	4	24	1.54
14396708--14396733	12	2.2	12	100	0	52	15	19	15	50	1.79
14405605--14405629	13	1.9	13	100	0	50	56	0	12	32	1.36
14407624--14407666	17	2.5	17	96	0	77	23	30	4	41	1.74
14411164--14411196	17	1.9	17	93	0	57	24	24	6	45	1.75
14414949--14414995	17	2.8	17	83	0	58	61	0	0	38	0.96
14415285--14415331	18	2.6	18	90	6	69	51	8	0	40	1.33
14415295--14415360	17	3.9	17	76	6	62	53	9	0	37	1.33
14416906--14417070	43	3.9	42	78	9	174	21	16	27	33	1.95
14416911--14417070	84	1.9	84	85	2	223	21	17	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14422810--14422854	22	2.0	22	100	0	90	22	8	22	46	1.79
14440764--14440895	65	2.0	65	97	0	246	19	14	22	43	1.87
14442124--14442178	28	2.0	28	100	0	110	49	21	3	25	1.66
14443895--14443925	15	2.1	15	93	0	53	38	19	0	41	1.51
14444719--14444751	18	1.9	18	88	11	52	12	12	9	66	1.44
14444814--14444857	24	1.9	23	86	9	63	45	6	4	43	1.51
14445541--14445580	6	6.7	6	88	0	62	62	0	32	5	1.17
14445544--14445578	12	2.9	12	100	0	70	60	0	34	5	1.21
14448001--14448176	44	4.0	44	100	0	352	36	11	25	27	1.90
14458105--14458150	18	2.6	18	82	6	58	63	0	0	36	0.95
14458437--14458464	13	2.2	13	100	0	56	46	21	7	25	1.76
14458900--14458958	18	3.3	18	69	9	50	66	0	3	30	1.08
14463335--14463411	6	12.0	6	71	17	57	5	19	1	74	1.08
14463339--14463412	16	4.6	15	73	9	58	5	20	1	72	1.11
14475404--14475443	21	1.9	21	100	0	80	52	0	5	42	1.23
14477363--14477550	61	3.1	60	77	3	187	29	1	29	39	1.64
14483383--14483424	17	2.3	18	80	8	50	38	7	14	40	1.73
14486907--14486951	18	2.4	19	79	20	58	28	2	0	68	1.01
14486907--14486959	10	5.6	9	76	10	52	32	1	0	66	1.03
14490083--14490114	2	16.0	2	100	0	64	50	0	0	50	1.00
14491116--14491145	15	2.0	15	93	0	51	60	3	6	30	1.39
14495047--14495122	25	3.0	25	81	9	91	39	18	17	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14495111--14495173	27	2.4	27	81	2	74	39	25	15	19	1.91
14504444--14504508	25	2.6	25	78	11	69	63	1	1	33	1.13
14504441--14504495	23	2.3	24	76	14	60	61	0	1	36	1.06
14512554--14512654	23	4.2	25	80	12	122	42	21	16	18	1.89
14512549--14512648	48	2.1	48	85	3	132	41	22	17	20	1.91
14518248--14518277	13	2.3	13	94	0	51	3	0	3	93	0.42
14523134--14523210	19	3.8	19	89	6	100	40	16	6	36	1.75
14524478--14524520	18	2.3	18	92	4	68	32	13	11	41	1.81
14525457--14525491	2	17.5	2	100	0	70	48	0	0	51	1.00
14534386--14534553	79	2.1	80	93	2	286	47	5	5	41	1.52
14535770--14535837	28	2.4	29	82	7	86	26	2	11	58	1.47
14535903--14536017	10	12.0	9	69	17	63	60	0	3	35	1.20
14535902--14536017	19	5.9	20	70	17	84	59	0	3	36	1.20
14535976--14536015	21	2.0	21	95	5	73	65	0	2	32	1.06
14542171--14542214	23	1.9	23	90	0	70	38	18	20	22	1.93
14543672--14543718	17	2.8	17	83	0	58	10	10	4	74	1.20
14544096--14544160	30	2.3	27	84	7	76	44	3	0	52	1.16
14544126--14544162	16	2.3	17	81	13	51	48	0	0	51	1.00
14546970--14547575	302	2.0	303	99	0	1196	35	11	19	33	1.88
14549700--14549736	16	2.3	16	86	13	58	40	0	0	59	0.97
14549814--14549845	13	2.4	14	85	15	50	43	0	0	56	0.99
14550509--14550559	15	3.5	15	71	15	52	25	13	9	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14551099--14551160	10	6.1	10	83	10	81	48	8	11	32	1.68
14551082--14551150	31	2.2	31	94	0	120	47	7	11	33	1.67
14552364--14552411	25	1.9	25	82	0	60	54	8	4	33	1.50
14552937--14552972	4	8.8	4	87	6	54	75	5	0	19	1.00
14553567--14553632	3	22.3	3	77	20	68	63	3	1	31	1.19
14553566--14553615	18	2.8	18	87	9	75	62	0	2	36	1.07
14555415--14555447	16	2.1	16	88	11	50	54	0	6	39	1.25
14555687--14555719	16	2.0	17	88	5	50	63	0	3	33	1.10
14556453--14556503	21	2.5	20	87	6	68	29	0	1	68	1.00
14558069--14558108	21	1.9	21	94	0	71	32	22	15	30	1.94
14558071--14558121	21	2.4	21	86	0	66	37	25	15	21	1.93
14560834--14560866	12	2.8	12	86	4	50	33	0	0	66	0.92
14569520--14569565	23	2.0	23	86	0	65	17	4	28	50	1.65
14570652--14570695	20	2.2	20	84	4	63	38	11	0	50	1.39
14571107--14571146	16	2.5	16	83	0	53	60	0	5	35	1.19
14571139--14571170	6	5.3	6	100	0	64	81	0	0	18	0.70
14571422--14571455	11	3.0	12	87	12	54	35	0	0	64	0.94
14571668--14571724	29	2.0	29	86	6	80	73	14	7	5	1.21
14571690--14571724	18	1.9	18	94	0	61	77	11	5	5	1.12
14578006--14578118	55	2.1	55	89	0	172	19	20	38	21	1.93
14578569--14578666	40	2.5	40	81	3	117	39	18	18	23	1.92
14578740--14579022	41	6.9	41	88	0	361	18	20	33	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14579289--14579318	15	2.0	15	93	0	51	20	0	43	36	1.52
14579324--14579364	21	2.0	20	85	4	55	19	0	39	41	1.52
14579399--14579429	15	2.0	16	93	6	55	22	6	38	32	1.80
14579594--14579623	15	2.0	15	93	0	51	20	0	43	36	1.52
14579629--14579669	21	2.0	20	85	4	55	19	0	39	41	1.52
14579704--14579734	15	2.0	16	93	6	55	22	6	38	32	1.80
14579217--14579823	305	2.0	305	98	0	1162	28	2	27	40	1.70
14579782--14579902	37	3.3	37	61	17	88	44	2	9	42	1.51
14579465--14580231	389	2.0	384	90	6	1236	32	2	23	41	1.69
14580021--14580077	23	2.6	22	86	5	71	22	1	42	33	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145