genome.fa.s13.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  117  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38919751--38919776	5	5.2	5	100	0	52	19	19	19	42	1.90
38921023--38921225	90	2.2	90	81	6	241	37	17	20	25	1.93
38937045--38937070	6	4.3	6	100	0	52	50	0	0	50	1.00
38937155--38937193	17	2.4	17	91	4	62	48	5	12	33	1.63
38937173--38937235	20	3.1	20	64	28	51	44	4	11	39	1.61
38937574--38937598	12	2.1	12	100	0	50	40	20	0	40	1.52
38942334--38942398	34	1.9	34	84	6	87	27	16	24	30	1.97
38944366--38944390	13	1.9	13	100	0	50	48	0	8	44	1.32
38947827--38948076	133	1.9	133	87	5	371	26	25	19	28	1.99
38948104--38948476	50	7.5	50	70	3	266	25	24	20	30	1.99
38948130--38948535	100	4.1	100	91	0	625	26	23	20	29	1.99
38948537--38949682	44	25.6	44	66	18	224	28	20	17	33	1.95
38948608--38949759	225	5.1	225	97	0	2117	28	20	16	34	1.94
38949771--38950361	89	6.6	89	82	3	616	23	22	23	30	1.99
38949771--38950361	178	3.3	177	86	2	747	23	22	23	30	1.99
38949846--38950347	44	11.3	44	72	7	323	23	21	24	29	1.99
38949846--38950361	268	1.9	267	82	1	649	23	22	24	29	1.99
38951597--38951652	7	7.7	7	78	21	62	14	16	0	69	1.19
38952558--38952602	22	2.0	22	91	0	72	66	6	15	11	1.42
38960403--38960555	79	1.9	79	97	0	288	24	16	16	42	1.88
38960858--38960894	18	2.1	18	90	5	58	29	5	0	64	1.15
38966133--38966175	16	2.8	16	86	6	63	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38967027--38967281	53	4.8	54	78	13	235	43	10	15	30	1.80
38967046--38967272	35	6.5	35	81	7	214	44	10	15	29	1.80
38967027--38967272	18	13.9	17	76	13	205	44	10	15	29	1.80
38967418--38967455	20	2.0	20	89	5	60	42	7	7	42	1.63
38967769--38967830	27	2.3	26	83	8	79	3	14	0	82	0.80
38967769--38967830	14	4.4	15	70	13	51	3	14	0	82	0.80
38968085--38968134	5	9.2	5	79	16	55	2	18	62	18	1.43
38968085--38968134	11	4.6	10	79	16	55	2	18	62	18	1.43
38968369--38968421	22	2.3	23	83	6	72	3	9	18	67	1.33
38968915--38969015	30	3.4	30	72	16	84	42	3	16	36	1.67
38968881--38969015	59	2.3	57	75	3	135	42	5	18	33	1.75
38969426--38970150	76	9.6	77	87	4	935	34	19	17	28	1.95
38971787--38972869	541	2.0	542	99	0	2159	26	24	18	30	1.98
38982499--38982731	53	4.4	53	78	9	233	45	11	14	29	1.79
38982499--38982730	35	6.5	34	78	6	189	44	11	14	29	1.80
38982499--38982731	18	13.1	18	75	8	201	45	11	14	29	1.79
38982748--38982783	18	1.9	19	88	5	56	36	5	8	50	1.56
38982900--38982937	19	2.0	19	100	0	76	47	10	5	36	1.61
38983265--38983320	11	4.6	11	77	18	58	0	17	0	82	0.68
38983262--38983309	10	4.5	10	85	12	60	0	18	0	81	0.70
38983264--38983316	22	2.4	21	81	9	70	0	18	0	81	0.70
38983264--38983320	25	2.2	26	87	12	82	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38983264--38983319	12	4.4	14	80	15	68	0	17	0	82	0.68
38983703--38983756	17	3.3	17	75	19	69	0	20	0	79	0.73
38983695--38983764	32	2.2	33	87	10	108	0	22	0	77	0.78
38983703--38983758	18	3.3	18	71	19	66	0	21	0	78	0.75
38984439--38984547	30	3.7	29	74	8	94	41	7	18	33	1.78
38985773--38985802	8	3.8	8	95	0	51	53	13	0	33	1.40
38989732--38989758	11	2.5	11	100	0	54	25	0	0	74	0.83
38996129--38996172	18	2.4	18	88	0	61	13	2	43	40	1.57
38998516--38998578	33	2.0	29	85	11	81	60	17	1	20	1.44
39002195--39002253	11	5.3	11	75	4	55	38	0	3	57	1.15
39006835--39006975	72	2.0	72	91	0	228	34	19	17	28	1.94
39007411--39007487	35	2.2	36	79	6	86	46	1	11	40	1.48
39009819--39009857	21	1.9	21	94	5	71	48	0	5	46	1.24
39009905--39009980	27	2.8	27	90	4	109	17	26	36	19	1.94
39010034--39010086	22	2.3	23	84	12	74	66	1	30	1	1.13
39010601--39010679	35	2.3	35	82	8	99	51	5	8	34	1.55
39010599--39010681	37	2.3	36	83	4	105	51	4	8	34	1.53
39012750--39012788	21	1.9	21	94	5	71	48	0	5	46	1.24
39012836--39012947	27	3.8	27	68	22	91	18	21	35	24	1.95
39024392--39024465	38	1.9	38	97	0	139	39	2	4	54	1.34
39024661--39024788	27	5.1	26	79	18	155	52	12	0	34	1.45
39024661--39024803	19	6.2	22	71	23	93	53	13	0	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39024608--39024788	49	3.7	49	83	5	235	52	14	0	32	1.46
39024688--39024825	41	3.2	44	77	15	119	54	13	0	31	1.45
39024999--39025266	22	12.2	21	74	17	192	31	0	12	55	1.41
39025023--39025079	19	2.9	19	86	2	78	33	0	14	52	1.41
39025124--39025184	19	3.1	19	82	13	86	32	0	13	54	1.39
39024999--39025239	41	5.7	40	72	20	177	31	0	12	54	1.42
39025133--39025265	27	5.3	25	78	18	143	33	0	12	53	1.44
39025133--39025266	49	2.7	49	89	0	214	32	0	12	53	1.44
39038357--39038427	34	2.1	35	87	7	103	22	15	0	61	1.33
39041001--39041032	4	8.2	4	93	6	57	75	0	0	25	0.81
39041007--39041069	12	5.3	12	74	11	51	71	3	1	23	1.09
39041312--39041367	29	1.9	29	88	0	85	21	1	19	57	1.50
39049339--39049395	25	2.2	26	79	14	64	29	1	1	66	1.12
39049334--39049396	27	2.3	27	77	20	69	28	1	3	66	1.16
39050132--39050163	16	2.0	16	100	0	64	50	6	25	18	1.70
39050275--39050336	19	3.0	21	71	23	60	48	0	3	48	1.17
39050953--39050991	20	1.9	20	84	5	51	38	5	0	56	1.22
39054310--39054412	21	4.9	21	67	9	75	45	20	20	13	1.84
39054284--39054476	42	4.6	42	81	8	205	46	17	20	15	1.84
39054367--39054475	21	5.2	20	70	8	83	46	17	19	16	1.84
39055926--39056242	51	6.3	50	90	3	458	29	23	15	32	1.95
39056073--39056097	7	3.6	7	100	0	50	16	32	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39055926--39056242	152	2.1	152	90	0	508	29	23	15	32	1.95
39055926--39056242	101	3.1	101	90	3	494	29	23	15	32	1.95
39062058--39062125	22	3.1	22	77	6	66	61	4	1	32	1.24
39064083--39064162	41	2.0	41	85	5	108	18	18	36	26	1.94
39064120--39064198	29	2.7	29	78	3	97	21	21	31	25	1.98
39064648--39064761	48	2.5	46	76	13	126	21	14	20	43	1.87
39064925--39064954	12	2.5	12	94	0	51	10	23	20	46	1.80
39064976--39065010	18	1.9	18	94	0	61	25	20	17	37	1.94
39065600--39065646	15	3.1	15	73	14	51	21	12	10	55	1.67
39066560--39066610	23	2.2	23	82	6	59	29	3	29	37	1.75
39067859--39067984	29	4.4	28	82	6	126	23	19	30	26	1.98
39069010--39069092	26	3.3	25	79	14	82	18	21	22	37	1.94
39069232--39069297	25	2.5	27	82	7	73	25	25	21	27	1.99
39075167--39075210	21	2.0	22	82	4	54	68	4	4	22	1.27
39075919--39075953	17	2.1	17	89	5	54	85	11	0	2	0.69
39076626--39077007	129	3.0	129	84	1	480	27	21	20	31	1.98
39076680--39076994	44	7.3	42	71	12	183	26	20	20	32	1.98
39077026--39077866	50	16.8	50	73	2	590	24	21	21	32	1.98
39077026--39077866	100	8.4	100	86	1	1056	24	21	21	32	1.98
39077034--39077849	301	2.7	302	87	0	1177	25	21	21	32	1.98
39077784--39077887	50	2.1	49	82	7	120	30	23	20	25	1.98
39077893--39078212	132	2.4	132	86	0	478	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39078439--39078495	22	2.5	23	85	8	80	28	28	10	33	1.90
39079411--39079452	14	2.9	15	79	13	52	0	21	0	78	0.75
39079412--39079450	20	2.0	20	90	10	62	0	23	0	76	0.78
39079412--39079471	17	3.6	16	85	12	77	1	21	0	76	0.87
39079421--39079463	20	2.2	20	86	0	59	2	20	0	76	0.89
39088054--39088092	5	7.6	5	82	5	51	41	0	17	41	1.50
39093366--39093423	2	29.0	2	96	0	107	50	1	48	0	1.11
39099509--39099547	18	2.2	17	86	13	53	33	0	20	46	1.51
39099773--39099825	23	2.3	23	96	0	97	24	20	24	30	1.99
39104099--39104290	54	3.6	54	100	0	384	30	23	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145