genome.fa.s13.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  58  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20082846--20082894	21	2.3	22	82	6	57	69	0	18	12	1.19
20082853--20082896	14	3.1	14	81	12	54	65	0	22	11	1.24
20084205--20085431	177	6.9	174	81	6	1274	31	13	22	31	1.93
20084226--20085431	44	27.2	44	78	7	1034	31	14	22	31	1.93
20084226--20085431	133	9.1	133	82	5	1142	31	14	22	31	1.93
20085933--20085973	22	1.9	21	85	5	55	70	17	9	2	1.25
20091180--20091229	22	2.3	23	79	10	59	46	2	0	52	1.12
20091217--20091260	21	2.0	23	86	8	65	47	0	0	52	1.00
20092755--20092784	13	2.3	13	94	0	51	80	0	3	16	0.85
20102271--20102329	7	8.0	7	80	14	57	79	0	20	0	0.73
20102272--20102329	13	4.5	13	80	6	73	79	0	20	0	0.74
20102511--20102902	212	1.8	213	97	0	741	30	18	18	32	1.95
20103738--20104085	46	7.5	46	90	0	525	24	16	26	32	1.96
20104120--20104550	132	3.3	132	93	0	736	29	18	24	27	1.98
20104296--20104708	220	1.9	220	91	2	686	28	18	24	28	1.98
20104443--20104580	44	3.2	42	67	22	113	30	15	26	26	1.96
20104485--20104626	44	3.2	45	66	23	111	29	17	25	27	1.97
20104435--20104629	88	2.2	88	94	1	338	30	17	25	26	1.97
20104982--20105025	19	2.2	20	84	12	54	70	22	0	6	1.11
20106772--20106872	25	4.2	24	73	16	100	31	0	10	57	1.33
20106743--20106883	73	1.9	75	89	2	223	31	0	11	56	1.40
20114427--20114459	2	16.5	2	93	0	57	51	0	3	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20120165--20120236	24	3.0	24	97	0	135	50	6	8	34	1.60
20121286--20121350	27	2.4	27	97	0	121	27	23	32	16	1.96
20127263--20127309	2	23.5	2	86	0	67	0	42	0	57	0.98
20127269--20127314	12	3.8	12	91	2	74	0	41	0	58	0.98
20142015--20142141	35	3.6	35	84	2	148	31	27	16	24	1.96
20143427--20143513	25	3.5	24	83	9	104	41	17	10	31	1.83
20148276--20148348	25	3.0	24	77	4	83	39	16	8	35	1.78
20156726--20156770	21	2.1	21	88	8	65	84	0	8	6	0.78
20157966--20158001	8	4.5	8	100	0	72	63	0	36	0	0.94
20158085--20158136	17	3.1	17	83	2	61	61	0	34	3	1.14
20158014--20158119	45	2.5	44	78	9	112	64	0	29	6	1.19
20158069--20158132	22	3.0	22	77	6	60	60	0	34	4	1.17
20160599--20160717	33	3.6	33	78	4	123	15	36	15	31	1.89
20160972--20161080	48	2.3	48	88	3	157	44	9	11	34	1.72
20164103--20164159	3	19.0	3	92	0	96	31	1	1	64	1.13
20173714--20173753	21	1.9	21	89	0	62	50	0	27	22	1.50
20175836--20175889	18	3.2	18	75	19	62	79	5	0	14	0.90
20175844--20175915	28	2.5	30	84	8	89	80	2	2	13	0.93
20175836--20175943	13	7.1	15	76	21	77	79	4	3	12	1.01
20175870--20175943	14	5.4	13	77	16	69	82	2	5	9	0.92
20175873--20175937	19	3.5	18	82	14	71	83	1	6	9	0.88
20175836--20175967	48	2.8	47	81	12	130	79	3	6	10	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20175836--20175967	47	2.8	47	80	10	128	79	3	6	10	1.03
20175871--20175957	28	3.1	28	76	12	81	81	2	6	9	0.95
20175833--20175922	7	13.3	7	68	15	55	80	3	3	13	0.97
20176795--20176892	52	1.9	51	87	2	142	50	18	17	14	1.79
20176841--20177014	84	2.1	84	96	0	321	56	13	18	10	1.66
20178377--20178675	44	6.8	44	89	1	413	29	18	25	26	1.98
20178680--20179345	50	13.7	50	70	8	442	33	20	19	26	1.97
20178680--20179339	97	6.8	97	86	5	827	33	20	19	26	1.97
20179055--20179339	90	3.1	90	84	9	381	35	21	17	25	1.95
20184283--20184489	113	1.8	114	87	3	310	55	15	2	25	1.54
20184595--20184652	18	3.4	17	84	11	75	1	36	0	62	1.06
20193199--20193244	20	2.3	20	92	0	74	28	4	15	52	1.61
20198430--20198469	19	2.2	18	86	13	55	22	2	15	60	1.47
20201282--20201306	6	4.2	6	100	0	50	64	0	36	0	0.94
20207122--20207167	24	1.9	24	90	0	74	76	6	13	4	1.14
20211100--20211155	27	2.1	27	82	0	67	46	5	16	32	1.69
20214274--20214373	50	2.0	50	86	0	137	20	30	16	34	1.94
20214282--20214373	25	3.7	25	83	0	121	20	29	16	33	1.94
20214284--20214389	25	4.2	25	79	3	79	21	28	17	32	1.96
20214284--20214389	50	2.1	50	82	0	122	21	28	17	32	1.96
20220187--20220300	56	2.0	56	100	0	228	26	15	28	28	1.96
20221718--20221787	25	2.8	25	95	0	122	15	30	20	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20223694--20223819	45	2.8	45	80	0	135	24	21	11	42	1.87
20223923--20223971	17	2.9	17	76	14	57	53	8	0	38	1.31
20228485--20228527	11	3.9	11	81	9	52	2	11	9	76	1.10
20228485--20228527	21	2.0	22	86	4	61	2	11	9	76	1.10
20234972--20235017	22	2.1	22	87	0	65	10	0	30	58	1.32
20238327--20238375	25	2.0	25	84	8	64	34	18	12	34	1.88
20246013--20246109	46	2.1	46	88	5	142	35	2	5	57	1.32
20247835--20247956	58	2.1	59	90	3	194	43	7	20	28	1.79
20251544--20251578	16	2.2	16	89	0	52	37	5	0	57	1.23
20251565--20251676	61	1.9	58	87	5	161	41	3	4	50	1.40
20258169--20258235	30	2.3	28	87	5	89	34	16	2	46	1.62
20259508--20259868	179	2.0	180	95	1	654	26	15	15	42	1.87
20267636--20267670	10	3.2	11	88	11	54	57	0	42	0	0.99
20269607--20269641	14	2.5	14	85	0	52	34	17	5	42	1.73
20271685--20272638	476	2.0	477	99	0	1901	34	24	10	29	1.90
20273249--20273300	22	2.4	21	87	6	68	0	25	3	71	1.03
20273690--20273778	33	2.7	34	77	3	83	22	41	12	23	1.87
20274037--20274227	49	3.8	49	86	5	242	45	12	10	31	1.76
20274037--20274227	97	1.9	100	85	8	264	45	12	10	31	1.76
20277550--20277624	26	2.8	26	80	8	98	25	25	26	22	2.00
20285328--20285374	22	2.1	22	100	0	94	48	12	8	29	1.71
20295375--20295418	22	2.0	23	86	4	63	65	2	2	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20295374--20295423	22	2.4	21	77	9	57	66	2	2	30	1.14
20297133--20297158	2	13.0	2	100	0	52	50	0	0	50	1.00
20324337--20324377	18	2.2	19	91	4	66	29	0	2	68	1.03
20327604--20327637	14	2.4	14	100	0	68	50	41	0	8	1.34
20337393--20337561	52	3.2	52	64	25	134	39	18	7	34	1.78
20337366--20337587	109	2.0	110	95	3	403	43	19	6	30	1.75
20337855--20338042	92	2.0	92	96	2	351	23	18	8	49	1.74
20339504--20339771	132	2.0	132	100	0	536	29	14	11	44	1.80
20340687--20340741	22	2.5	22	81	0	65	54	30	0	14	1.41
20346502--20346540	3	13.0	3	88	0	60	64	2	2	30	1.21
20346859--20346956	21	4.7	21	86	10	112	40	14	8	36	1.75
20347965--20348183	88	2.5	88	93	1	368	20	23	28	27	1.99
20348031--20348174	44	3.3	44	64	11	114	19	22	32	25	1.97
20348050--20348197	44	3.3	45	65	11	124	18	23	26	31	1.98
20348163--20348401	44	5.4	44	78	5	232	29	26	17	27	1.97
20350047--20350086	17	2.4	17	86	0	53	10	22	5	62	1.46
20354273--20354347	21	3.7	20	89	8	116	40	14	9	36	1.78
20354995--20356068	537	2.0	537	100	0	2148	32	23	16	27	1.96
20358028--20358076	22	2.2	23	88	3	73	28	30	6	34	1.82
20358463--20358503	20	2.2	20	86	8	59	29	9	12	48	1.72
20365661--20365714	9	6.5	8	82	16	65	62	0	3	33	1.12
20365668--20365714	3	15.7	3	86	8	69	63	0	2	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20365674--20365711	14	2.8	14	96	4	69	65	0	0	34	0.93
20366098--20366135	19	2.1	18	90	5	58	65	10	0	23	1.23
20372749--20373030	151	1.9	151	83	4	372	42	9	5	41	1.61
20375434--20375475	17	2.5	16	81	11	57	78	0	4	16	0.91
20375429--20375493	27	2.4	27	80	12	73	70	1	12	15	1.23
20379524--20379551	2	14.0	2	100	0	56	0	50	0	50	1.00
20386763--20386788	6	4.3	6	100	0	52	84	0	0	15	0.62
20387574--20387629	23	2.4	23	100	0	112	28	50	3	17	1.63
20395103--20395140	14	2.8	14	84	4	51	73	2	2	21	1.07
20398584--20398643	24	2.4	26	86	5	79	51	5	3	40	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145