genome.fa.s13.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  97  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33078269--33078368	51	2.0	51	82	4	121	46	2	26	26	1.64
33080050--33080094	24	1.9	24	95	4	83	31	20	4	44	1.71
33080712--33080749	4	9.5	4	83	11	51	26	0	0	73	0.83
33080710--33080759	20	2.5	20	90	3	73	26	2	2	70	1.09
33081641--33081699	26	2.3	26	84	0	73	59	0	8	32	1.28
33083215--33083274	23	2.7	23	82	10	70	8	18	8	65	1.45
33084485--33084515	13	2.3	14	94	5	55	70	0	0	29	0.87
33087358--33088280	477	1.9	478	89	2	1446	30	13	26	29	1.94
33090455--33090491	19	1.9	19	88	0	56	67	8	0	24	1.17
33093331--33093663	171	1.9	171	91	0	549	29	19	16	34	1.94
33094963--33095007	24	1.9	24	86	13	67	40	2	33	24	1.68
33097336--33097416	40	2.0	40	100	0	162	50	7	9	32	1.63
33097894--33097973	23	3.3	23	80	5	79	22	22	22	32	1.98
33101014--33101061	16	2.9	16	81	6	51	62	4	0	33	1.14
33104346--33104397	24	2.2	24	89	0	77	55	9	1	32	1.43
33104409--33104466	28	2.1	28	100	0	116	41	10	3	44	1.55
33104952--33105005	24	2.3	22	79	20	56	33	11	7	48	1.67
33105069--33105121	18	2.9	18	76	15	56	64	1	0	33	1.05
33109141--33109180	15	2.7	15	84	0	53	37	42	0	20	1.52
33109104--33109216	44	2.6	42	81	6	127	34	40	0	23	1.61
33109128--33109198	22	3.2	20	75	15	61	32	45	1	21	1.61
33109343--33109417	35	2.1	35	83	9	91	37	0	6	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33116059--33116123	29	2.2	29	89	5	96	58	7	20	13	1.60
33118832--33118890	30	1.9	30	82	3	73	37	5	23	33	1.77
33119125--33119410	101	2.8	101	94	2	477	24	18	27	30	1.98
33119125--33119410	51	5.6	51	77	6	251	24	18	27	30	1.98
33119414--33119512	46	2.2	43	79	12	101	24	17	25	33	1.96
33125351--33125459	44	2.5	44	89	0	164	36	25	19	18	1.94
33125449--33125578	43	3.0	43	88	0	206	33	29	16	20	1.95
33126934--33127914	44	20.8	45	64	14	210	29	19	22	27	1.98
33126659--33127904	143	8.7	143	87	1	1717	30	19	22	27	1.98
33131308--33131390	38	2.2	38	82	8	98	36	16	14	32	1.89
33134519--33134571	25	2.1	25	89	0	79	15	5	15	64	1.47
33136171--33136208	17	2.2	17	90	9	60	36	7	2	52	1.45
33136645--33136807	82	2.0	81	96	1	299	35	21	5	37	1.77
33137080--33137238	34	4.6	33	68	14	115	36	6	3	54	1.42
33137048--33137256	104	2.0	105	99	0	411	35	6	4	52	1.49
33137111--33137254	34	4.2	33	68	18	105	36	6	5	52	1.50
33137113--33137269	32	4.7	32	70	20	104	36	7	5	50	1.53
33137449--33137553	50	2.1	51	90	1	167	30	7	15	46	1.73
33141385--33141424	18	2.2	18	86	8	55	60	2	0	37	1.11
33141395--33141445	17	2.8	19	82	11	54	60	0	0	39	0.97
33145698--33145744	18	2.6	18	86	0	67	68	2	2	27	1.13
33151896--33152002	30	3.6	30	85	0	142	35	23	21	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33152111--33152208	26	3.8	26	86	4	144	35	24	24	15	1.94
33152112--33152211	52	1.9	52	91	4	166	36	24	25	15	1.94
33152379--33152679	81	3.7	81	82	4	349	22	16	18	42	1.89
33152379--33152679	27	11.1	27	83	5	288	22	16	18	42	1.89
33152406--33152679	54	5.1	54	86	0	334	23	16	17	42	1.88
33154514--33154655	70	2.0	71	98	1	277	61	4	4	30	1.34
33160607--33160663	28	2.0	28	93	0	96	42	10	17	29	1.83
33166084--33166186	35	2.9	35	86	2	145	41	27	15	15	1.87
33173522--33173589	22	3.0	24	67	18	63	38	10	27	23	1.87
33178415--33178538	63	2.0	63	96	0	230	19	16	19	45	1.86
33200437--33200619	7	25.6	7	68	4	96	18	1	30	50	1.54
33200437--33200619	22	8.5	22	75	10	105	18	1	30	50	1.54
33200437--33200653	21	10.1	21	74	10	111	19	0	29	50	1.54
33200443--33200618	36	4.9	34	74	8	100	17	1	31	50	1.54
33200541--33200583	15	2.9	15	79	6	52	13	0	32	53	1.41
33201255--33201856	125	5.0	124	81	10	648	35	18	22	22	1.95
33201559--33201856	114	2.6	113	86	1	416	36	17	23	22	1.95
33208227--33208256	9	3.3	9	95	0	51	43	20	0	36	1.52
33210939--33210973	18	2.0	18	88	5	54	14	31	42	11	1.81
33211910--33211957	18	2.7	18	83	6	62	39	4	16	39	1.68
33215898--33216014	42	2.8	42	86	0	153	22	18	29	29	1.97
33217485--33217548	27	2.4	27	84	2	76	51	3	4	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33221734--33221792	30	2.0	30	89	0	91	32	25	23	18	1.97
33222146--33222338	27	7.1	27	82	8	162	24	15	17	43	1.87
33222160--33222329	54	3.1	54	87	5	229	24	15	18	41	1.89
33222132--33222331	81	2.5	81	83	4	235	26	15	18	41	1.89
33224895--33224926	5	6.4	5	100	0	64	62	0	0	37	0.95
33229182--33229221	16	2.5	17	80	19	50	27	2	17	52	1.57
33230764--33230797	17	2.0	17	88	11	52	23	0	5	70	1.09
33242970--33243003	17	2.0	17	100	0	68	64	0	0	35	0.94
33242971--33243012	17	2.4	17	92	4	66	71	0	0	28	0.86
33245513--33245710	41	4.8	41	81	2	209	18	24	23	33	1.97
33245512--33245673	82	2.0	82	88	0	243	17	25	22	34	1.96
33259301--33259447	66	2.2	66	84	4	181	40	16	29	14	1.88
33259418--33259527	21	5.2	21	82	0	112	34	17	41	6	1.75
33259438--33259527	42	2.1	42	87	0	126	33	16	43	6	1.74
33259881--33260087	43	4.8	43	79	0	216	22	15	31	29	1.95
33260072--33260113	22	1.9	22	90	0	66	40	26	21	11	1.88
33262120--33262182	28	2.2	29	83	13	87	65	0	34	0	0.93
33262131--33262191	10	6.5	10	77	17	60	67	0	32	0	0.91
33262131--33262193	5	13.4	5	75	8	53	66	0	33	0	0.92
33262112--33262214	38	2.8	38	85	8	133	67	0	32	0	0.90
33262131--33262201	28	2.6	27	84	8	90	69	0	30	0	0.89
33262132--33262249	31	3.3	35	77	14	102	71	0	28	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33262121--33262224	28	3.6	28	74	12	75	69	0	30	0	0.89
33262121--33262225	10	10.8	10	70	17	53	68	0	31	0	0.90
33262586--33263371	158	5.0	157	75	12	748	51	7	10	30	1.64
33262571--33263371	318	2.5	317	93	1	1338	51	7	10	30	1.64
33263302--33263422	61	2.0	61	80	6	138	43	9	16	29	1.80
33268657--33268689	16	2.1	16	94	0	57	57	15	3	24	1.52
33268847--33268883	10	3.6	10	88	3	56	0	29	0	70	0.88
33277489--33277706	111	1.9	115	90	4	354	41	13	16	28	1.86
33281069--33281121	20	2.6	19	82	14	61	30	5	5	58	1.44
33283460--33283541	31	2.7	30	75	7	76	40	0	4	54	1.22
33283491--33283529	18	2.0	20	85	9	55	38	0	5	56	1.22
33284253--33284660	207	2.0	205	86	2	575	30	25	19	24	1.98
33293654--33293689	17	2.2	17	95	5	65	75	5	0	19	1.00
33294483--33294651	91	1.9	91	80	0	203	29	26	21	23	1.99
33294454--33294858	207	2.0	203	87	2	578	31	24	19	24	1.98
33295389--33295483	46	2.1	46	91	0	154	40	22	2	35	1.66
33299971--33300093	22	5.4	22	64	21	74	37	25	2	34	1.69
33299993--33300071	24	3.4	24	67	19	76	40	24	1	34	1.63
33299958--33300098	46	3.1	46	100	0	282	40	23	2	34	1.67
33300186--33300228	22	2.0	21	90	4	68	16	2	30	51	1.57
33300300--33300345	21	2.2	21	88	0	65	17	2	34	45	1.61
33300193--33300384	106	1.8	107	83	3	262	20	3	31	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33300469--33300498	15	2.0	15	93	0	51	63	0	3	33	1.11
33300705--33300742	20	1.9	20	94	0	67	34	0	7	57	1.28
33301262--33301306	19	2.4	19	84	0	63	33	42	2	22	1.66
33301652--33301678	14	1.9	14	100	0	54	40	0	7	51	1.30
33302837--33302882	21	2.2	21	88	0	65	28	17	50	4	1.65
33303326--33303604	43	6.5	43	88	0	396	28	18	28	24	1.98
33305468--33305653	51	3.7	50	83	2	210	27	26	17	27	1.98
33313170--33313355	51	3.7	49	80	6	185	29	26	17	26	1.98
33314762--33314825	21	3.3	21	62	20	57	21	14	25	39	1.91
33318227--33318310	43	2.0	43	87	0	123	32	15	11	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145