genome.fa.s13.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  91  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31281919--31282014	47	2.0	47	95	0	174	45	2	5	46	1.37
31282914--31283000	45	2.0	44	90	6	140	36	26	4	32	1.77
31284178--31284214	9	4.1	9	92	0	65	29	10	13	45	1.77
31287070--31287106	9	4.1	9	92	0	65	45	13	10	29	1.77
31287830--31287860	5	6.2	5	100	0	62	19	19	19	41	1.90
31314351--31314480	27	4.9	27	86	0	172	30	26	7	35	1.85
31315291--31315340	25	2.0	25	96	0	91	46	18	12	24	1.82
31319008--31319093	40	2.2	40	91	0	136	37	18	11	32	1.87
31325053--31325081	2	14.5	2	100	0	58	48	0	0	51	1.00
31327527--31327564	18	2.2	18	90	9	62	21	5	2	71	1.19
31333386--31333437	27	2.0	26	81	11	61	63	3	1	30	1.23
31335330--31335387	29	2.0	29	100	0	116	24	24	13	37	1.91
31338640--31338694	26	2.1	26	86	0	74	29	21	9	40	1.84
31340680--31340804	60	2.1	56	84	7	151	41	18	6	33	1.76
31340940--31341045	19	5.4	19	69	19	65	60	8	1	29	1.37
31340950--31340995	21	2.2	20	85	11	58	60	10	2	26	1.41
31341022--31341065	10	4.4	10	80	11	54	63	13	0	22	1.29
31341015--31341075	20	3.1	19	81	6	68	62	13	1	22	1.39
31341773--31341855	10	8.4	10	74	16	66	28	2	4	63	1.27
31341771--31341845	20	3.9	18	83	10	96	32	2	4	61	1.28
31344471--31344502	17	1.9	17	93	6	57	25	6	12	56	1.59
31363471--31363543	21	3.5	21	68	7	67	35	19	16	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31363468--31363551	42	2.0	42	100	0	168	35	21	16	26	1.94
31367700--31367738	15	2.6	14	84	11	51	23	23	5	48	1.70
31367953--31368117	76	2.2	75	79	3	177	30	18	23	26	1.98
31369447--31369474	7	4.0	7	100	0	56	57	0	0	42	0.99
31376055--31376093	17	2.3	17	95	0	69	48	12	0	38	1.42
31380283--31380329	24	2.0	23	84	12	60	55	4	6	34	1.45
31380310--31380435	61	2.0	63	79	14	138	59	2	5	32	1.33
31381626--31381803	86	2.1	83	86	3	239	33	21	19	26	1.97
31381655--31382102	86	5.3	85	74	11	364	28	21	19	30	1.98
31381780--31382104	44	7.6	44	74	12	293	27	21	20	30	1.98
31381696--31382129	127	3.4	127	94	0	710	27	21	20	30	1.98
31382059--31382203	74	1.9	75	91	4	240	22	22	20	34	1.97
31382149--31382255	42	2.6	41	80	4	126	28	23	20	27	1.99
31386952--31386986	16	2.2	16	100	0	70	42	17	17	22	1.88
31387927--31387952	2	13.0	2	100	0	52	50	0	0	50	1.00
31390045--31390078	3	11.0	3	87	6	50	61	0	5	32	1.20
31392814--31392852	16	2.4	16	91	0	69	35	5	30	28	1.79
31393071--31393133	19	2.9	23	71	22	64	55	1	0	42	1.09
31397436--31397470	17	2.0	18	88	5	54	22	0	8	68	1.16
31403276--31403430	81	2.0	80	89	6	244	29	16	10	43	1.82
31417153--31417184	7	4.7	7	96	3	57	12	9	0	78	0.97
31417235--31417281	19	2.5	19	96	3	87	38	4	0	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31418860--31418966	21	5.1	21	78	1	108	16	17	16	48	1.81
31418881--31419036	42	3.7	43	80	3	147	17	18	16	48	1.82
31418881--31419010	21	6.2	21	72	3	73	16	19	16	47	1.83
31418984--31419038	21	2.6	21	79	0	56	16	21	16	45	1.85
31428273--31428298	7	3.7	7	100	0	52	57	15	0	26	1.38
31428468--31428505	20	1.9	20	84	10	51	57	7	0	34	1.28
31429424--31429475	11	4.6	11	90	2	77	42	1	32	23	1.65
31429423--31429475	22	2.3	23	90	6	90	41	1	32	24	1.66
31431739--31431925	92	2.0	92	96	0	347	29	25	20	24	1.99
31432358--31432613	128	2.0	128	96	0	467	35	11	14	38	1.83
31435086--31435209	42	3.0	41	84	7	160	30	24	15	29	1.95
31438610--31438665	21	2.8	19	71	10	58	39	5	8	46	1.58
31441481--31441583	49	2.1	49	100	0	206	21	18	15	44	1.86
31449535--31449567	17	2.0	17	88	5	50	42	0	0	57	0.98
31449536--31449632	44	2.2	44	87	1	133	41	7	2	49	1.42
31449632--31449676	22	2.1	21	84	12	56	40	2	0	57	1.11
31449914--31449953	21	1.9	21	85	10	55	57	0	7	35	1.27
31450089--31450117	2	14.5	2	100	0	58	51	0	0	48	1.00
31450460--31450488	4	7.2	4	100	0	58	75	0	0	24	0.80
31450663--31450688	5	5.2	5	100	0	52	42	19	19	19	1.90
31451505--31451541	9	4.1	9	92	0	65	29	10	13	45	1.77
31451597--31451627	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31454824--31454921	27	3.6	27	86	4	144	19	15	20	44	1.86
31454796--31454930	27	5.0	26	79	7	128	21	17	19	42	1.89
31454823--31454930	53	2.0	54	89	1	164	20	15	19	44	1.87
31457690--31457744	26	2.1	27	89	3	85	14	14	25	45	1.83
31462133--31462296	44	3.9	43	78	10	158	32	25	13	28	1.94
31462134--31462294	84	1.9	83	87	5	234	32	26	13	27	1.94
31464288--31464402	43	2.7	43	88	0	158	28	19	26	26	1.98
31472250--31472276	6	4.5	6	100	0	54	70	0	0	29	0.88
31473176--31473204	2	14.5	2	100	0	58	48	0	0	51	1.00
31473607--31473648	19	2.2	19	100	0	84	33	19	4	42	1.72
31492453--31492489	18	2.1	18	89	0	56	13	37	32	16	1.87
31492524--31492571	21	2.3	21	88	0	78	31	43	14	10	1.79
31494526--31494607	40	2.0	40	88	4	121	29	36	28	6	1.81
31496597--31496652	17	3.2	18	77	7	53	28	8	8	53	1.62
31519917--31519953	18	2.0	19	89	5	58	75	2	16	5	1.10
31523417--31523625	42	5.0	42	88	2	260	33	18	22	25	1.97
31524057--31524124	21	3.2	21	91	0	100	4	44	17	33	1.69
31529882--31529921	20	2.1	19	85	4	53	30	0	12	57	1.36
31529837--31530274	25	17.9	25	67	20	107	31	1	18	47	1.58
31529961--31530039	41	1.9	41	89	0	122	29	1	18	50	1.55
31529963--31530069	41	2.6	41	78	3	106	31	1	21	44	1.63
31530095--31530273	12	16.1	12	65	25	58	34	1	16	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31530144--31530218	31	2.4	31	95	0	132	36	0	10	53	1.36
31530018--31530283	34	8.4	31	78	12	185	32	2	19	46	1.62
31529828--31530261	9	50.4	9	71	16	246	32	1	18	47	1.58
31530240--31530293	21	2.6	21	88	5	65	35	3	16	44	1.66
31531993--31532020	14	2.0	14	100	0	56	42	0	35	21	1.53
31531952--31532020	23	3.0	24	73	14	72	36	2	43	17	1.64
31532135--31532594	115	4.0	113	76	6	370	42	18	13	25	1.88
31532900--31533049	14	10.9	14	71	7	92	46	28	2	22	1.63
31533037--31533069	17	1.9	17	93	0	57	39	45	3	12	1.57
31533009--31533144	7	18.3	7	74	11	85	39	40	2	16	1.64
31533093--31533155	22	2.9	22	81	9	67	33	42	6	17	1.74
31533117--31533163	22	2.1	22	84	0	58	38	42	4	14	1.66
31533244--31533298	22	2.5	22	82	8	60	56	20	0	23	1.42
31538883--31538935	25	2.1	25	89	0	79	35	11	18	33	1.87
31551893--31551949	24	2.4	24	96	0	105	47	28	5	19	1.71
31556374--31556418	20	2.3	19	85	11	56	2	22	2	73	1.05
31556430--31556480	25	2.1	24	96	3	93	50	0	0	49	1.00
31557111--31557209	49	2.0	49	100	0	198	32	18	15	34	1.92
31560358--31560385	2	14.0	2	100	0	56	50	0	0	50	1.00
31561812--31561919	37	2.8	39	79	11	114	33	24	15	26	1.95
31564802--31564950	40	3.7	40	83	0	172	20	19	20	38	1.93
31564792--31564951	80	2.0	80	83	0	203	21	19	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31568448--31568508	31	2.0	29	87	6	86	55	6	0	37	1.26
31568490--31568546	29	2.0	28	83	10	71	61	5	1	31	1.28
31569233--31569291	27	2.1	28	81	9	68	27	5	1	66	1.22
31570330--31570365	19	1.9	18	88	5	54	44	2	5	47	1.41
31570654--31570689	3	12.0	3	100	0	72	33	0	0	66	0.92
31576895--31576937	18	2.5	17	78	14	52	74	2	0	23	0.93
31576896--31576937	13	3.1	14	83	10	52	76	2	0	21	0.90
31578900--31581456	851	3.0	851	94	0	4443	30	20	16	32	1.95
31582759--31582798	21	1.9	21	84	0	53	25	32	25	17	1.97
31583219--31583266	21	2.3	21	85	7	62	62	6	18	12	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145