genome.fa.s13.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  126  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41427664--41427689	13	2.0	13	100	0	52	46	15	0	38	1.46
41427640--41427795	56	2.8	56	83	7	208	43	14	10	32	1.78
41429382--41429421	18	2.2	19	86	8	57	45	5	2	47	1.38
41430288--41430315	2	14.0	2	100	0	56	50	0	50	0	1.00
41438740--41439047	41	7.7	41	80	6	308	24	18	29	27	1.98
41438772--41439008	76	3.0	76	79	7	226	24	18	28	27	1.98
41438813--41439047	117	2.0	116	87	0	335	22	20	29	26	1.99
41438772--41439056	158	1.8	157	83	3	369	25	19	28	26	1.99
41439978--41440012	18	1.9	18	88	11	54	28	2	28	40	1.71
41441997--41442029	2	17.0	2	93	6	59	48	0	0	51	1.00
41443719--41443792	29	2.6	29	86	2	96	40	8	1	50	1.41
41448317--41448351	11	3.2	11	83	0	52	42	0	14	42	1.45
41449314--41449604	126	2.3	126	92	0	474	32	17	20	28	1.96
41450288--41450343	22	2.5	22	80	5	60	17	55	10	16	1.69
41454426--41454522	47	2.0	47	80	9	108	54	5	2	38	1.34
41464419--41464950	264	2.0	265	97	0	1012	31	14	19	35	1.91
41465739--41465765	8	3.4	8	100	0	54	37	11	0	51	1.37
41470871--41470906	19	1.9	18	88	5	54	77	8	2	11	1.08
41474012--41474083	36	2.0	36	86	2	99	5	40	1	52	1.33
41474871--41474898	9	3.1	9	100	0	56	0	10	0	89	0.49
41479846--41479891	11	4.6	10	82	15	51	28	0	8	63	1.24
41479860--41479903	19	2.3	19	80	7	54	34	0	4	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41480725--41480780	27	2.2	25	83	6	67	25	1	3	69	1.14
41480789--41480869	20	4.1	20	78	12	69	34	1	8	55	1.38
41480948--41480978	9	3.4	9	95	0	53	32	3	9	54	1.49
41481900--41481945	20	2.3	19	85	10	65	36	4	6	52	1.47
41487935--41488012	37	2.1	37	100	0	156	34	29	8	26	1.87
41488313--41488433	54	2.3	54	84	7	158	41	0	33	23	1.61
41489420--41489461	23	1.9	21	85	9	57	30	11	4	52	1.59
41489632--41489701	30	2.4	29	80	4	77	54	8	4	32	1.50
41494508--41494545	2	20.0	2	89	10	62	50	0	0	50	1.00
41496768--41496842	21	3.6	20	85	10	89	40	14	9	36	1.78
41497784--41497845	31	2.1	30	82	8	81	33	3	4	58	1.36
41501183--41501237	29	2.0	27	85	7	74	29	3	0	67	1.08
41505566--41505622	28	2.1	28	86	3	80	52	8	12	26	1.67
41506791--41506824	16	2.1	16	89	10	52	32	0	2	64	1.08
41510988--41511048	31	2.0	31	86	0	86	16	21	27	34	1.95
41513863--41513920	28	2.1	28	100	0	116	17	6	13	62	1.52
41526348--41526633	142	2.0	143	98	0	556	40	23	8	27	1.83
41531408--41531437	5	6.0	5	100	0	60	20	0	80	0	0.72
41535581--41535616	3	12.0	3	87	0	54	61	2	36	0	1.11
41536890--41536917	3	9.3	3	100	0	56	0	32	0	67	0.91
41537137--41537197	3	21.7	3	77	12	67	3	29	1	65	1.18
41537137--41537199	11	5.6	11	79	7	65	3	28	1	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41537143--41537197	14	3.7	14	85	11	58	3	30	1	63	1.22
41537137--41537185	17	2.9	17	96	0	89	4	28	0	67	1.09
41537142--41537197	17	3.5	16	83	14	71	3	30	1	64	1.21
41537739--41537852	60	1.9	60	85	7	160	40	8	9	41	1.69
41537817--41537870	20	2.7	20	77	11	56	35	11	9	44	1.72
41537910--41538008	20	4.9	20	69	20	73	39	14	11	35	1.81
41538011--41538057	20	2.3	20	88	0	67	29	8	19	42	1.80
41538120--41538365	20	12.6	20	68	14	138	36	9	12	41	1.75
41538232--41538289	18	3.1	18	85	5	71	43	8	12	36	1.73
41538321--41538371	20	2.5	20	78	6	59	27	5	13	52	1.63
41539841--41539886	21	2.2	21	84	3	58	69	0	2	28	1.00
41542134--41542206	36	2.0	37	97	2	139	46	10	12	30	1.76
41542864--41542910	15	2.9	17	90	9	73	23	4	0	72	1.02
41542863--41542910	17	2.9	16	88	11	71	22	4	0	72	1.01
41542864--41542921	17	3.4	16	82	17	57	25	5	0	68	1.10
41542897--41542991	27	3.5	27	69	20	72	28	3	3	65	1.23
41543107--41543171	22	2.8	24	77	13	82	27	6	3	63	1.33
41548129--41548204	38	2.0	38	94	0	134	39	15	15	28	1.89
41552649--41552700	24	2.2	24	82	6	61	28	3	3	63	1.30
41552781--41552806	11	2.4	11	100	0	52	53	0	0	46	1.00
41553085--41553122	18	2.2	18	90	4	60	65	2	0	31	1.06
41555926--41555974	24	2.0	24	92	7	82	46	14	0	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41556632--41556666	13	2.8	13	91	4	54	31	8	20	40	1.82
41565255--41565293	20	2.0	20	84	0	51	41	5	0	53	1.23
41570682--41572485	901	2.0	901	100	0	3608	25	21	22	30	1.99
41583167--41583385	107	2.0	108	98	0	422	36	20	8	34	1.83
41589895--41589932	19	2.0	20	89	5	60	36	23	2	36	1.69
41594210--41594238	8	3.6	8	100	0	58	34	0	0	65	0.93
41595216--41595279	29	2.2	28	86	2	83	26	0	7	65	1.19
41596317--41596342	10	2.6	10	100	0	52	50	7	0	42	1.31
41599257--41599297	20	2.0	21	85	4	57	51	4	4	39	1.45
41601917--41602048	40	3.3	39	74	6	122	35	20	22	21	1.96
41601917--41602068	40	3.8	39	75	7	121	36	20	21	21	1.95
41602037--41602238	70	2.8	70	86	8	196	17	21	26	33	1.96
41602087--41602238	70	2.2	70	96	3	279	13	20	28	37	1.90
41620547--41620711	66	2.5	65	84	4	206	40	18	27	13	1.88
41620721--41620797	21	3.7	21	87	0	82	36	18	38	6	1.76
41620736--41620800	21	3.1	21	90	0	103	35	16	43	4	1.69
41620917--41621156	43	5.6	43	75	5	180	22	18	30	29	1.97
41620921--41621114	87	2.2	87	87	4	293	20	15	32	30	1.94
41620957--41621157	86	2.3	87	81	5	237	22	18	29	28	1.98
41622121--41622187	17	3.8	18	77	16	68	49	2	2	44	1.32
41622111--41622184	18	4.1	18	74	8	53	50	2	2	44	1.30
41622111--41622184	34	2.1	35	82	5	87	50	2	2	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41623227--41623282	21	2.7	21	80	5	60	14	37	23	25	1.92
41623268--41623316	21	2.3	21	85	0	71	16	26	22	34	1.95
41623353--41623398	21	2.2	21	92	0	74	13	26	26	34	1.92
41623248--41623526	95	2.9	95	81	3	285	18	32	18	30	1.95
41626802--41626844	17	2.5	17	88	3	59	72	2	4	20	1.14
41627058--41627088	11	2.8	11	95	0	53	0	29	0	70	0.87
41630926--41630963	5	7.8	5	97	2	69	42	36	0	21	1.53
41633601--41633645	20	2.2	20	96	0	81	17	20	17	44	1.87
41638501--41638526	6	4.3	6	100	0	52	15	0	0	84	0.62
41644817--41644849	16	2.1	16	88	5	50	78	3	9	9	1.05
41655852--41655887	3	12.0	3	100	0	72	66	0	0	33	0.92
41657440--41657514	39	1.9	39	86	7	109	52	6	2	38	1.42
41657993--41658026	15	2.3	15	89	0	50	35	0	5	58	1.22
41658461--41658494	17	2.1	17	88	5	52	64	0	0	35	0.94
41658479--41658674	94	2.1	94	80	4	225	45	13	12	28	1.80
41659106--41659172	31	2.2	31	88	0	98	43	11	13	31	1.80
41659116--41659176	31	2.0	31	96	0	113	40	9	13	36	1.77
41659116--41659186	31	2.3	31	90	2	99	40	11	12	35	1.79
41659685--41659711	2	13.5	2	100	0	54	48	0	0	51	1.00
41662304--41662333	3	10.0	3	92	0	51	3	0	33	63	1.11
41677257--41677333	14	5.0	15	71	20	52	42	14	9	33	1.77
41677273--41677312	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41677261--41677327	34	1.9	35	90	3	109	46	13	8	31	1.74
41686978--41687022	16	2.7	18	80	16	60	24	2	4	68	1.19
41688460--41688587	50	2.5	50	87	5	168	32	21	7	39	1.80
41689009--41689092	33	2.5	34	94	1	143	55	0	2	41	1.12
41690595--41690645	21	2.5	20	81	12	59	41	0	1	56	1.10
41690653--41690699	23	2.0	24	83	4	60	42	0	0	57	0.98
41691657--41691721	19	3.4	19	78	14	71	30	1	3	64	1.18
41692203--41692363	87	1.9	87	88	2	243	36	18	9	34	1.84
41699243--41699275	16	2.1	16	100	0	66	42	6	6	45	1.53
41699639--41699880	120	2.0	121	98	1	468	49	9	4	37	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145