genome.fa.s13.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  116  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38615095--38615357	9	29.2	9	73	21	157	38	0	15	46	1.46
38615142--38615367	34	5.9	34	70	23	155	38	0	14	46	1.48
38615095--38615379	81	3.5	81	99	0	552	38	0	15	46	1.48
38615344--38615388	22	2.1	21	91	4	72	40	2	13	44	1.56
38618015--38618070	16	3.5	16	80	7	69	23	7	3	66	1.33
38618505--38618545	13	3.1	14	82	6	50	46	24	7	21	1.77
38621051--38621097	20	2.3	20	85	7	60	65	4	0	29	1.11
38622954--38623206	126	2.0	126	91	3	411	34	13	14	37	1.85
38625117--38625141	13	1.9	13	100	0	50	32	4	24	40	1.73
38629511--38629668	42	3.7	43	78	5	133	24	15	27	32	1.95
38629511--38629668	43	3.7	42	77	5	131	24	15	27	32	1.95
38629819--38629901	39	2.1	40	95	2	150	54	4	9	31	1.54
38629828--38629889	20	3.2	20	68	13	56	58	4	8	29	1.48
38634639--38634703	32	2.0	32	100	0	130	60	12	6	21	1.54
38635291--38635350	24	2.6	23	76	15	61	35	1	11	51	1.48
38637213--38637245	7	4.7	7	100	0	66	42	57	0	0	0.98
38637227--38637299	21	3.5	22	73	17	59	36	42	5	15	1.70
38637234--38637314	34	2.3	35	82	2	92	35	39	4	19	1.74
38640445--38640469	2	12.5	2	100	0	50	52	0	0	48	1.00
38643391--38643429	20	2.0	20	89	0	60	10	10	7	71	1.30
38644467--38644552	42	2.0	42	95	0	154	23	30	15	31	1.95
38663842--38663898	22	2.8	21	79	10	64	35	21	7	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38668177--38668209	15	2.1	16	88	5	50	18	0	3	78	0.87
38668965--38669043	26	3.1	25	74	18	74	32	7	5	54	1.51
38669077--38669144	27	2.5	28	78	9	77	33	8	2	54	1.47
38669347--38669392	16	2.9	16	84	9	58	26	13	0	60	1.32
38669360--38669395	17	2.1	18	94	5	65	30	13	0	55	1.39
38671046--38671095	15	3.3	15	85	0	64	38	18	32	12	1.87
38674509--38674562	25	2.1	27	86	6	76	44	1	9	44	1.46
38674520--38674567	20	2.4	21	79	6	55	45	2	8	43	1.45
38674504--38674701	56	3.2	56	66	21	153	42	4	7	45	1.51
38674478--38674739	129	2.0	130	99	0	517	42	5	6	45	1.53
38674638--38674691	25	2.1	27	86	6	76	44	1	9	44	1.46
38674649--38674696	20	2.4	21	79	6	55	45	2	8	43	1.45
38675904--38675962	29	2.0	29	96	0	109	38	10	0	50	1.36
38680884--38680937	20	2.7	20	85	0	63	55	5	5	33	1.46
38681909--38681934	4	6.5	4	100	0	52	23	0	0	76	0.78
38681864--38682165	150	2.0	151	98	1	588	36	13	5	45	1.66
38682059--38682084	4	6.5	4	100	0	52	23	0	0	76	0.78
38687601--38687695	49	1.9	49	97	0	181	44	20	9	26	1.81
38687813--38687905	47	2.0	44	83	6	114	32	5	8	53	1.54
38691342--38691407	32	2.0	34	91	8	109	36	21	22	19	1.95
38702265--38702341	40	2.0	40	92	2	129	40	20	18	20	1.92
38702266--38702350	40	2.2	38	85	8	111	37	21	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38702765--38702925	86	1.9	83	92	3	268	17	16	31	34	1.92
38703958--38704013	27	2.0	28	86	10	80	17	1	41	39	1.60
38703958--38704015	13	4.3	14	72	22	52	18	1	41	37	1.61
38704008--38704063	21	2.7	21	85	0	76	7	0	48	44	1.30
38704019--38704057	14	2.8	14	81	14	53	2	0	51	46	1.14
38721891--38722250	43	8.3	43	68	12	159	25	17	26	30	1.97
38721921--38722250	129	2.6	127	81	5	385	25	17	27	29	1.97
38722240--38722336	43	2.3	43	83	0	113	29	28	21	19	1.98
38722257--38722355	43	2.3	43	87	0	144	24	30	25	20	1.99
38726204--38726365	42	3.9	41	86	4	207	23	22	23	30	1.99
38726204--38726363	84	1.9	85	89	3	252	23	22	23	30	1.99
38726680--38726729	21	2.4	21	93	0	82	2	42	18	38	1.61
38733586--38733683	41	2.4	41	84	1	126	39	26	15	18	1.90
38733742--38733833	40	2.3	40	92	0	157	20	29	17	32	1.96
38737465--38737510	23	2.0	23	100	0	92	39	13	4	43	1.63
38741448--38741507	30	2.0	29	83	6	75	25	13	16	45	1.84
38748136--38748518	29	13.0	29	92	4	628	29	0	24	45	1.57
38749600--38749641	7	6.0	7	86	10	59	54	14	0	30	1.40
38752490--38752529	19	2.1	19	85	0	53	75	2	10	12	1.15
38754813--38754920	38	2.8	38	95	0	198	4	28	11	55	1.55
38759944--38759980	11	3.4	11	88	0	56	64	5	8	21	1.40
38771673--38771733	13	4.7	13	71	13	54	32	4	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38771673--38771733	26	2.3	26	85	0	77	32	4	0	62	1.17
38785791--38792676	43	161.7	43	76	10	5076	25	0	26	47	1.58
38788199--38788390	7	26.7	7	72	16	103	22	0	29	47	1.51
38788617--38788768	50	3.2	49	82	12	199	26	0	26	46	1.53
38789524--38789579	28	2.0	28	92	0	94	21	0	35	42	1.53
38790074--38790171	7	13.7	7	78	7	65	22	0	31	45	1.52
38790081--38790170	14	6.4	14	82	7	83	21	0	32	46	1.51
38790103--38790159	15	3.9	15	86	6	73	15	0	35	49	1.45
38790490--38790903	23	17.4	26	72	21	262	29	2	20	47	1.62
38790490--38790881	96	4.1	94	80	14	434	29	2	20	47	1.62
38790488--38790881	119	3.3	119	99	0	770	29	2	20	47	1.63
38791496--38791526	15	2.1	15	93	0	53	16	0	32	51	1.44
38792475--38792545	27	2.6	27	82	10	74	22	0	30	46	1.52
38785791--38792676	21	323.3	21	77	10	5568	25	0	26	47	1.58
38793016--38793058	18	2.4	18	84	0	59	46	9	27	16	1.77
38793966--38794003	20	1.9	20	84	10	51	55	7	2	34	1.43
38794947--38794989	22	2.0	22	86	9	61	48	4	25	20	1.69
38794945--38794999	11	4.8	12	80	10	53	45	3	27	23	1.69
38796313--38796361	19	2.4	21	83	10	57	73	8	2	16	1.16
38796410--38796472	27	2.3	27	97	0	117	20	30	31	17	1.96
38806426--38806528	30	3.5	29	80	9	86	48	7	8	34	1.63
38809270--38809322	23	2.3	23	87	3	72	66	15	5	13	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38811362--38811628	132	2.0	134	98	1	520	45	11	8	34	1.70
38812713--38812745	15	2.1	16	88	5	50	66	0	0	33	0.92
38813169--38813212	19	2.3	19	84	7	54	31	2	0	65	1.05
38813180--38813225	23	2.1	23	88	8	69	26	4	2	67	1.21
38813166--38813209	18	2.4	18	78	10	54	29	2	0	68	1.02
38813166--38813217	19	2.9	17	76	15	52	30	1	0	67	1.02
38814324--38814363	21	1.9	21	100	0	80	70	15	5	10	1.32
38833813--38833847	17	2.1	17	94	0	61	22	14	20	42	1.88
38834523--38834579	26	2.2	26	87	0	78	47	3	5	43	1.43
38834797--38834835	21	2.0	20	90	10	62	56	0	2	41	1.13
38837764--38837805	20	2.1	20	86	0	57	47	0	7	45	1.30
38843129--38843162	17	2.0	17	100	0	68	29	17	35	17	1.93
38849120--38849297	71	2.5	71	78	7	191	27	22	23	26	1.99
38850886--38851045	77	2.1	77	97	0	302	28	13	16	41	1.86
38853466--38853694	114	2.0	115	99	0	451	52	6	1	39	1.37
38855891--38855920	16	1.9	16	93	6	53	66	6	6	20	1.38
38858329--38858544	111	1.9	111	91	0	351	20	36	14	28	1.92
38858521--38858873	99	3.6	99	99	0	697	15	42	15	26	1.87
38858976--38859103	30	4.3	30	88	0	175	17	51	7	22	1.71
38859003--38859118	60	1.9	60	87	0	169	20	52	6	19	1.69
38867238--38867272	6	5.8	6	89	0	52	0	60	0	40	0.97
38872510--38872551	17	2.5	17	96	0	75	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38874671--38874697	14	1.9	14	100	0	54	59	0	0	40	0.98
38877326--38877391	31	2.1	31	91	5	107	42	7	12	37	1.71
38877332--38877398	31	2.2	31	86	5	91	46	7	11	34	1.69
38879033--38879081	25	2.0	25	84	8	64	51	4	4	40	1.40
38887549--38887573	13	1.9	13	100	0	50	48	0	0	52	1.00
38891434--38891669	67	3.6	66	86	2	314	25	10	7	55	1.60
38898204--38898255	19	2.9	18	72	13	54	61	3	0	34	1.14
38907558--38907610	21	2.4	22	78	18	56	56	0	24	18	1.42
38918905--38918941	9	4.1	9	85	0	56	48	13	8	29	1.71
38918989--38919031	21	2.0	21	82	8	52	20	37	0	41	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145