genome.fa.s13.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  114  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38033179--38033212	17	1.9	18	88	5	52	61	0	2	35	1.11
38038263--38038302	18	2.2	17	86	13	53	62	0	0	37	0.95
38039433--38039467	17	2.1	17	100	0	70	37	22	22	17	1.94
38047339--38047388	19	2.6	19	80	0	55	38	0	2	60	1.09
38052864--38052897	16	2.1	16	88	0	50	38	2	11	47	1.55
38058669--38058738	16	4.4	16	85	0	95	40	2	31	25	1.70
38058730--38059025	147	2.0	146	89	1	450	36	7	21	34	1.81
38059167--38059206	20	2.0	21	85	5	55	60	5	0	35	1.19
38067083--38067240	81	2.0	80	91	2	255	37	5	15	41	1.69
38067301--38067353	24	2.2	24	80	6	63	45	1	7	45	1.42
38074204--38074269	18	3.7	17	71	15	53	80	0	9	10	0.91
38075492--38075937	86	5.2	86	94	0	766	26	22	24	26	2.00
38075975--38076160	46	4.2	45	64	12	112	27	19	23	29	1.98
38075887--38076293	134	3.1	134	90	1	597	27	19	22	29	1.98
38076197--38076382	95	2.0	94	84	4	241	27	18	24	29	1.98
38084010--38084044	18	1.9	18	100	0	70	28	25	28	17	1.97
38087795--38087878	29	2.8	30	81	5	89	35	14	14	35	1.86
38087795--38087869	29	2.5	31	82	6	91	34	14	13	37	1.85
38091618--38091737	61	2.0	60	88	6	181	34	13	23	29	1.93
38094527--38094579	18	2.9	18	88	2	70	66	0	1	32	1.03
38094545--38094590	16	2.8	16	83	9	58	69	0	0	30	0.89
38095260--38095292	16	2.0	17	88	5	50	42	0	12	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38098674--38099026	43	8.3	43	85	2	415	26	19	28	25	1.99
38102382--38102406	3	8.3	3	100	0	50	32	0	0	68	0.90
38108372--38108420	18	2.7	18	87	0	71	55	0	10	34	1.34
38108746--38108812	25	2.7	25	86	4	91	40	13	16	29	1.87
38122667--38122694	2	14.0	2	100	0	56	50	0	0	50	1.00
38125151--38125217	31	2.2	31	89	5	100	43	8	26	20	1.82
38126692--38126721	2	15.0	2	100	0	60	50	0	0	50	1.00
38129180--38129246	31	2.2	31	86	5	91	44	7	25	22	1.78
38137724--38137755	2	16.0	2	100	0	64	50	0	50	0	1.00
38140664--38141365	132	5.3	132	99	0	1359	23	25	19	30	1.98
38141346--38141878	217	2.5	217	93	0	904	25	23	21	29	1.99
38141377--38141878	44	11.6	43	71	14	300	26	22	21	29	1.99
38143174--38143421	124	2.0	124	98	0	478	26	22	19	32	1.97
38144542--38144995	230	2.0	224	95	0	764	24	23	17	32	1.96
38177219--38177259	18	2.2	19	87	12	59	31	2	4	60	1.30
38180520--38180649	42	3.1	42	83	2	145	16	21	17	43	1.87
38180520--38180656	21	6.5	21	73	3	105	16	21	17	44	1.86
38181147--38181186	21	1.9	21	94	0	71	12	12	25	50	1.75
38181244--38181314	30	2.4	30	97	0	133	25	22	22	29	1.99
38181303--38181394	43	2.1	43	88	4	132	26	28	19	26	1.99
38181406--38181542	43	3.2	43	87	3	177	23	22	18	35	1.96
38183819--38184247	9	48.2	9	72	14	268	34	1	17	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38183845--38184009	16	10.5	16	74	17	87	30	1	21	46	1.61
38183845--38184026	34	5.2	35	77	16	153	30	1	20	46	1.61
38183819--38184242	25	17.0	25	72	17	230	33	1	16	47	1.58
38184010--38184237	48	4.8	48	91	3	363	36	2	13	47	1.55
38184168--38184278	30	3.6	30	76	17	109	36	0	14	47	1.50
38184152--38184302	64	2.3	65	86	6	218	38	0	14	46	1.50
38183819--38184295	48	9.9	50	79	12	313	34	1	16	46	1.57
38184105--38184324	112	2.0	112	90	3	345	36	1	14	47	1.54
38184217--38184324	48	2.2	48	87	6	148	37	0	12	48	1.48
38186740--38186825	40	2.3	36	80	13	93	32	5	9	52	1.57
38191470--38192242	159	4.9	156	73	15	654	30	12	8	49	1.68
38192031--38192060	16	1.9	15	93	6	51	26	3	0	70	1.03
38191527--38192084	160	3.5	155	75	13	524	30	11	7	50	1.66
38191470--38192253	323	2.5	313	90	3	1065	30	12	7	49	1.68
38192576--38192720	22	6.6	22	71	19	83	0	31	0	68	0.95
38192622--38192745	10	12.8	10	72	14	82	0	29	0	70	0.88
38192614--38192743	44	3.1	44	85	6	182	0	30	0	69	0.89
38192621--38192746	38	3.4	39	81	13	151	0	30	0	69	0.89
38192592--38192743	82	1.9	82	86	8	220	0	29	0	69	0.93
38193683--38193779	7	13.4	7	71	14	63	36	43	4	16	1.67
38193682--38193779	29	3.4	28	70	14	74	35	42	4	17	1.68
38193685--38193779	22	4.4	22	77	13	90	34	44	4	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38193798--38193842	13	3.4	13	80	17	56	48	33	4	13	1.62
38193928--38193973	23	2.0	24	87	8	69	39	28	8	23	1.84
38194291--38194733	125	3.5	125	92	2	721	26	20	22	30	1.98
38196222--38196402	90	2.0	91	98	1	355	41	3	5	49	1.42
38196900--38196960	29	2.1	29	81	6	70	31	16	11	40	1.84
38203592--38203620	12	2.3	13	94	5	51	82	0	0	17	0.66
38214552--38214591	19	2.0	20	85	4	55	22	20	10	47	1.79
38214736--38214831	43	2.2	42	80	10	104	34	17	19	28	1.95
38214957--38215411	44	10.2	44	76	5	403	29	16	25	29	1.97
38214958--38215394	133	3.3	132	80	3	457	29	16	24	28	1.96
38215249--38215411	89	1.8	89	86	0	236	30	15	26	27	1.96
38215030--38215406	133	2.8	132	83	2	468	30	15	25	29	1.96
38215740--38215783	18	2.6	16	86	10	61	40	11	2	45	1.53
38223866--38223939	1	74.0	1	91	0	121	95	0	4	0	0.24
38228041--38228079	19	2.1	19	85	9	53	66	0	5	28	1.12
38228050--38228107	22	2.8	20	78	17	55	60	1	1	36	1.17
38229048--38229106	21	2.6	23	76	13	68	61	0	10	28	1.29
38229639--38229685	21	2.2	22	81	11	62	53	4	2	40	1.32
38237583--38237630	25	1.9	25	87	8	71	37	14	27	20	1.92
38240757--38240797	20	2.1	19	86	4	55	34	4	0	60	1.18
38240742--38240811	27	2.6	26	76	12	70	41	2	0	55	1.14
38240774--38240825	19	2.7	18	80	17	52	34	0	3	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38240778--38240838	30	2.0	31	87	3	88	37	0	4	57	1.20
38244844--38245464	310	2.0	311	99	0	1235	38	22	13	25	1.90
38245745--38245932	96	1.9	97	98	1	369	39	23	9	27	1.86
38246683--38246709	13	2.1	13	100	0	54	37	0	22	40	1.54
38247328--38247444	48	2.4	48	83	9	159	34	4	45	16	1.67
38247847--38247909	16	3.9	16	80	0	54	26	20	6	46	1.75
38250534--38250589	17	3.5	17	76	18	66	14	30	41	14	1.85
38250534--38250610	30	2.6	30	91	0	118	14	32	38	14	1.86
38250811--38250861	21	2.5	20	81	9	57	25	39	15	19	1.91
38253791--38253843	14	3.9	13	78	11	54	35	0	11	52	1.37
38255679--38255737	10	5.8	10	75	13	50	27	0	5	67	1.11
38257605--38257693	43	2.1	43	87	4	126	33	19	11	35	1.87
38258593--38258631	17	2.3	17	90	0	60	10	10	51	28	1.68
38259630--38259656	14	1.9	14	100	0	54	37	3	7	51	1.48
38263017--38263105	43	2.1	43	89	0	133	33	17	12	35	1.88
38274352--38274506	33	4.6	33	69	24	117	20	20	27	32	1.97
38274275--38274448	75	2.3	76	89	2	253	20	17	27	34	1.95
38274354--38274550	102	1.9	103	90	1	315	21	20	25	32	1.97
38274245--38274576	178	1.9	177	89	1	522	21	18	27	33	1.96
38276203--38276291	43	2.1	43	86	0	124	32	15	13	38	1.87
38281627--38282060	213	2.0	213	94	0	751	33	18	18	29	1.95
38285936--38285973	17	2.4	17	86	8	53	34	2	2	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38285744--38285981	9	25.6	9	67	16	51	32	5	2	59	1.34
38288691--38288844	9	16.3	9	69	14	62	30	5	1	62	1.25
38288739--38288777	17	2.2	18	86	4	53	28	0	0	71	0.86
38288761--38288808	21	2.3	21	81	0	60	35	4	2	58	1.29
38288764--38288830	31	2.2	30	82	15	84	34	4	1	59	1.26
38288903--38288940	17	2.4	17	86	8	53	34	2	2	60	1.24
38288910--38288974	27	2.4	26	80	14	62	30	4	3	61	1.31
38290689--38290730	6	7.0	6	86	0	57	50	11	16	21	1.77
38292101--38292214	43	2.7	43	77	13	126	23	20	28	28	1.99
38292866--38292982	40	3.0	38	83	9	155	38	19	18	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145