genome.fa.s13.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  79  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26677152--26677268	26	4.7	26	72	12	84	33	19	25	21	1.97
26677715--26677753	5	7.6	5	82	5	51	43	17	0	38	1.50
26680014--26680663	332	2.0	332	84	2	849	40	15	15	28	1.88
26681754--26681911	41	3.9	41	80	3	183	26	29	11	32	1.91
26681828--26681897	21	3.4	21	71	11	63	28	32	10	28	1.89
26688437--26688469	14	2.4	14	94	0	57	12	9	9	69	1.36
26688990--26689206	41	5.3	41	80	4	179	24	28	13	33	1.93
26689087--26689153	20	3.3	20	64	12	55	19	34	13	32	1.91
26689023--26689214	82	2.3	82	85	0	249	24	30	13	31	1.93
26712140--26712279	72	1.9	72	91	0	226	40	15	10	32	1.82
26712311--26712429	59	2.0	59	100	0	238	37	11	11	38	1.79
26725298--26725458	87	1.9	87	91	0	268	31	11	15	41	1.83
26727079--26727239	87	1.9	87	88	2	243	40	15	13	30	1.86
26727879--26727910	2	16.0	2	100	0	64	50	0	50	0	1.00
26738452--26738600	72	2.1	72	81	6	169	42	14	10	32	1.80
26752637--26752679	21	2.0	21	90	0	68	16	13	30	39	1.87
26755534--26755566	2	16.5	2	100	0	66	0	48	0	51	1.00
26756202--26756362	87	1.9	87	92	2	270	30	13	15	40	1.86
26763750--26763779	15	1.9	16	93	6	53	23	3	6	66	1.30
26786210--26786301	25	3.7	25	75	13	82	29	21	16	32	1.95
26786328--26786453	42	3.0	42	100	0	252	33	23	11	30	1.91
26786344--26786454	23	5.2	23	60	24	62	32	22	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26788236--26788262	14	1.9	14	100	0	54	33	22	14	29	1.94
26789403--26789505	25	4.1	25	82	0	98	26	17	21	34	1.95
26789438--26789524	25	3.5	25	87	0	102	29	13	19	36	1.91
26791495--26791641	73	2.0	73	93	0	249	34	22	12	31	1.91
26792866--26792915	7	6.9	7	81	6	55	76	6	14	4	1.13
26792866--26792921	22	2.5	22	80	5	60	75	5	12	7	1.18
26799053--26799122	34	2.1	34	100	0	140	30	25	10	34	1.89
26801509--26801597	40	2.2	40	87	0	133	16	28	20	34	1.94
26801576--26801623	20	2.4	20	85	0	60	27	22	20	29	1.99
26801589--26801673	40	2.1	40	82	4	100	16	35	18	29	1.93
26807542--26807575	16	2.2	15	89	5	50	47	8	0	44	1.34
26823780--26823845	26	2.5	26	85	0	87	25	16	28	28	1.97
26834167--26834213	22	2.0	23	92	8	78	51	4	12	31	1.59
26838261--26838356	30	3.2	30	82	8	124	19	39	27	13	1.89
26854250--26854340	32	2.8	32	82	9	114	32	17	24	25	1.97
26870537--26870585	22	2.2	23	82	10	66	42	18	8	30	1.79
26878650--26878675	11	2.4	11	100	0	52	15	7	0	76	0.99
26879665--26879733	20	3.5	20	75	15	70	31	11	30	26	1.91
26881176--26881214	20	2.0	20	84	0	51	25	7	12	53	1.65
26893354--26893379	12	2.2	12	100	0	52	30	0	30	38	1.58
26898959--26899018	27	2.3	27	88	2	86	68	0	21	10	1.19
26898960--26899017	12	4.0	15	74	19	52	68	0	22	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26903253--26903294	16	2.6	16	88	0	57	28	28	11	30	1.92
26918102--26918140	20	2.0	20	100	0	78	25	5	10	58	1.51
26922273--26922344	33	2.1	34	92	2	119	41	6	11	40	1.67
26923219--26923263	14	3.3	14	93	6	83	44	6	6	42	1.57
26923222--26923264	13	3.2	13	96	3	77	41	9	6	41	1.64
26923328--26923352	12	2.1	12	100	0	50	44	16	8	32	1.76
26926043--26926069	13	2.1	13	100	0	54	62	7	7	22	1.46
26930925--26931048	62	2.0	62	93	0	212	18	20	24	36	1.95
26936528--26936561	11	3.2	11	83	8	52	26	32	11	29	1.92
26940714--26940826	23	4.7	23	70	18	70	68	4	20	7	1.31
26940707--26940757	15	3.3	15	76	15	50	76	1	19	1	0.98
26951990--26952032	20	2.1	21	86	4	61	23	18	9	48	1.76
26960078--26960183	55	1.9	55	90	0	167	24	17	31	26	1.97
26964213--26964247	18	1.9	18	88	0	52	45	14	40	0	1.45
26971720--26971768	21	2.3	21	86	6	64	44	2	4	48	1.33
26979031--26979098	33	2.1	33	83	5	84	33	17	5	42	1.74
27000612--27000642	9	3.4	9	90	0	53	38	22	12	25	1.90
27004852--27005035	101	1.8	102	86	3	273	24	18	25	31	1.97
27004852--27005034	51	3.6	50	77	5	163	24	18	25	31	1.98
27005040--27005170	45	2.9	45	89	0	199	25	16	22	35	1.95
27007023--27007121	46	2.2	46	92	0	162	48	8	9	34	1.64
27008176--27008217	22	2.0	22	90	4	68	19	47	16	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27008374--27008423	25	2.0	26	84	4	66	70	4	10	16	1.30
27012223--27012648	44	9.7	44	87	1	557	28	21	27	22	1.99
27012667--27012987	88	3.7	88	90	0	473	25	23	25	24	2.00
27012667--27012987	175	1.8	176	88	0	491	25	23	25	24	2.00
27013854--27013901	24	2.0	25	83	4	62	68	4	10	16	1.33
27017448--27017599	76	2.0	77	89	1	234	45	12	4	37	1.63
27020063--27020104	20	2.1	20	86	8	59	38	0	4	57	1.20
27023769--27023821	6	8.8	6	87	0	79	22	0	0	77	0.77
27023769--27023821	18	2.9	18	94	0	88	22	0	0	77	0.77
27023803--27023834	14	2.4	14	90	10	50	28	6	0	65	1.16
27023769--27023834	12	5.3	12	82	10	53	22	3	0	74	0.96
27026773--27026807	19	1.9	17	88	11	52	5	14	5	74	1.19
27027347--27027377	16	1.9	16	100	0	62	51	0	0	48	1.00
27027348--27027384	16	2.3	16	90	0	56	62	0	0	37	0.96
27029906--27029965	31	1.9	31	100	0	120	38	13	21	26	1.90
27031694--27031732	18	2.2	17	86	13	53	33	0	20	46	1.51
27037397--27037452	28	2.0	28	96	0	103	37	32	5	25	1.78
27037228--27037643	219	1.9	218	91	0	688	30	30	12	26	1.93
27045286--27045341	25	2.2	26	78	15	73	33	17	19	28	1.95
27048650--27048681	17	1.9	16	93	6	55	28	12	6	53	1.62
27049741--27049891	42	3.6	42	81	5	162	15	23	17	43	1.88
27049742--27049891	21	7.1	21	67	6	79	16	23	17	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27055492--27055552	25	2.3	28	78	16	76	31	9	21	37	1.86
27058825--27058876	20	2.7	20	82	8	63	50	3	5	40	1.45
27058825--27058916	20	4.6	19	72	21	57	47	5	5	41	1.49
27059053--27059099	21	2.2	21	84	3	58	74	8	6	10	1.22
27059559--27059633	39	1.9	39	84	10	100	62	1	20	16	1.39
27059585--27059634	21	2.4	21	83	6	57	66	2	12	20	1.34
27059598--27059644	21	2.3	21	88	3	69	57	2	19	21	1.51
27059642--27059694	20	2.8	17	76	20	52	58	9	16	15	1.62
27059688--27059753	20	3.3	20	79	12	64	66	4	12	16	1.39
27059688--27059735	21	2.3	21	85	3	62	66	2	10	20	1.32
27059588--27059752	19	8.4	19	69	20	74	61	6	15	17	1.53
27062219--27067354	712	7.2	715	85	3	6518	39	20	11	29	1.87
27067117--27067850	247	3.0	246	90	1	1112	35	22	11	30	1.90
27068370--27068428	31	1.9	31	96	0	109	38	10	23	27	1.87
27069167--27069201	13	2.7	13	90	0	52	45	0	11	42	1.40
27073340--27073376	12	3.2	12	88	7	58	72	8	5	13	1.24
27073335--27073373	11	3.5	11	83	10	53	71	7	2	17	1.21
27074301--27074360	18	3.2	18	78	7	66	71	3	18	6	1.22
27084158--27084235	41	1.9	41	92	5	131	55	14	17	12	1.70
27084540--27084601	30	2.1	30	87	6	90	61	9	12	16	1.56
27084588--27085090	20	26.1	19	66	21	151	53	7	17	21	1.69
27084648--27084738	39	2.4	39	80	8	109	51	7	17	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27084807--27084881	21	3.7	20	75	21	66	54	1	17	26	1.51
27084906--27085050	78	1.8	77	83	4	191	56	5	17	20	1.60
27085458--27085508	20	2.6	19	84	9	66	49	11	15	23	1.78
27085769--27085828	21	2.9	21	78	7	61	48	3	3	45	1.35
27085851--27085941	35	2.5	36	91	8	141	47	4	4	43	1.43
27085922--27085965	22	2.0	22	82	8	54	36	0	0	63	0.95
27102114--27102153	16	2.5	16	100	0	80	22	30	25	22	1.99
27107410--27107448	14	2.6	15	88	8	53	0	25	7	66	1.18
27108391--27108574	27	6.8	27	87	2	217	41	22	17	17	1.90
27108390--27108574	81	2.3	81	84	1	255	42	22	17	17	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145