genome.fa.s13.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  44  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15633281--15633324	20	2.2	20	83	4	52	45	11	9	34	1.72
15634028--15634122	50	1.9	50	97	0	181	37	13	10	37	1.80
15638855--15638973	49	2.5	48	91	1	193	16	16	37	28	1.91
15639810--15639851	21	2.0	21	90	0	66	16	7	23	52	1.68
15640176--15640208	9	3.7	9	95	0	57	36	12	0	51	1.39
15642685--15642715	15	2.1	15	100	0	62	38	6	32	22	1.80
15645094--15645124	15	2.1	15	100	0	62	38	6	32	22	1.80
15645722--15646037	43	7.3	43	87	2	420	31	32	17	18	1.94
15653631--15653676	3	15.3	3	100	0	92	34	32	0	32	1.58
15656140--15656177	14	2.7	14	91	0	58	34	34	0	31	1.58
15656145--15656200	14	4.1	14	79	6	53	35	39	0	25	1.56
15656140--15656209	20	3.3	21	79	15	65	35	37	0	27	1.57
15656530--15656611	7	11.6	7	80	2	92	51	30	1	17	1.53
15656822--15657227	41	9.9	40	84	5	246	30	31	20	17	1.95
15656864--15657231	41	9.0	40	89	2	511	29	33	20	16	1.94
15656864--15657231	163	2.2	164	90	1	560	29	33	20	16	1.94
15657292--15657401	40	2.8	40	83	1	141	20	24	19	35	1.96
15657665--15658028	41	8.9	41	82	4	421	30	26	20	22	1.98
15658094--15658196	40	2.6	40	78	4	102	17	24	26	32	1.97
15666817--15666874	28	2.1	28	100	0	116	24	10	25	39	1.87
15669332--15669387	27	2.0	28	93	3	96	21	19	16	42	1.89
15671499--15671646	27	5.5	27	83	7	176	40	17	22	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15671499--15671644	54	2.7	53	87	1	202	41	17	21	19	1.91
15680717--15680752	19	2.0	18	89	10	56	33	5	5	55	1.46
15681343--15681438	28	3.4	28	88	2	149	32	22	22	21	1.98
15681764--15682012	27	9.3	26	83	7	284	15	18	21	44	1.86
15681764--15682012	54	4.6	54	86	3	342	15	18	21	44	1.86
15681765--15682012	81	3.1	80	83	5	329	15	18	20	45	1.86
15684030--15684069	15	2.7	15	85	11	55	12	50	0	37	1.41
15686640--15686742	50	2.1	50	100	0	206	40	11	24	23	1.87
15694885--15694924	15	2.7	15	85	11	55	12	50	0	37	1.41
15701900--15701928	12	2.3	13	94	5	51	13	0	10	75	1.04
15703628--15703686	24	2.4	25	78	18	61	42	27	11	18	1.85
15718831--15718904	29	2.6	29	88	0	112	16	14	29	39	1.88
15721019--15721060	18	2.5	17	82	17	52	0	14	7	78	0.95
15721033--15721076	20	2.3	19	80	4	52	2	15	4	77	1.04
15722047--15722072	5	5.2	5	100	0	52	19	0	0	80	0.71
15727611--15727655	13	3.2	14	81	9	56	64	0	24	11	1.26
15728893--15729875	88	11.2	88	87	1	1319	27	24	25	23	2.00
15728910--15729839	44	21.2	43	63	15	242	26	24	25	24	2.00
15730835--15730876	18	2.5	17	85	11	59	0	14	4	80	0.86
15731467--15731504	16	2.4	16	86	4	51	26	2	5	65	1.27
15731468--15731532	25	2.7	25	85	4	80	23	3	4	69	1.21
15731468--15731513	3	15.0	3	81	4	56	28	2	4	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15731702--15731748	23	2.0	25	83	8	62	38	6	2	53	1.39
15766174--15766204	1	31.0	1	100	0	62	0	0	0	100	0.00
15770229--15770261	17	2.0	17	88	5	50	45	9	12	33	1.73
15780449--15780577	54	2.4	54	92	0	213	26	19	13	40	1.89
15780449--15780606	54	2.9	54	87	0	163	25	20	13	39	1.90
15781021--15781067	24	2.0	24	86	0	67	29	14	12	42	1.83
15785173--15785334	29	5.7	29	86	4	231	25	0	24	49	1.55
15785173--15785334	57	2.9	56	91	0	270	25	0	24	49	1.55
15785382--15785430	25	1.9	25	87	4	71	38	16	4	40	1.67
15785544--15785596	24	2.2	24	86	0	70	1	26	30	41	1.66
15785850--15785895	18	2.6	18	82	0	56	39	8	30	21	1.84
15804884--15804912	15	1.9	15	100	0	58	62	6	13	17	1.52
15809313--15809377	28	2.3	28	83	0	85	35	23	21	20	1.96
15824303--15824335	17	1.9	18	88	11	52	45	0	12	42	1.41
15827736--15827774	21	1.9	20	84	5	51	15	7	23	53	1.67
15851972--15852070	49	2.0	49	94	0	171	39	17	9	34	1.81
15856239--15856274	18	2.0	18	88	0	54	33	5	13	47	1.67
15857562--15857617	29	2.0	28	82	10	69	28	7	3	60	1.40
15868303--15868367	26	2.5	26	73	14	62	33	10	20	35	1.87
15870434--15870503	27	2.6	27	80	6	70	54	11	0	34	1.37
15883904--15883936	17	1.9	17	100	0	66	42	6	27	24	1.78
15888486--15888518	17	1.9	17	100	0	66	42	6	27	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15891223--15891257	15	2.4	15	85	4	54	65	0	14	20	1.26
15891303--15891330	7	4.0	7	100	0	56	42	0	0	57	0.99
15891297--15891358	21	2.9	21	72	11	54	51	0	8	40	1.31
15891349--15891380	14	2.3	15	84	15	50	34	0	34	31	1.58
15891353--15891391	14	2.8	13	85	11	51	38	0	33	28	1.57
15892501--15892556	14	4.2	14	76	21	66	12	0	39	48	1.41
15898891--15899032	71	2.0	71	100	0	284	19	12	21	46	1.83
15902318--15902370	25	2.1	25	85	0	70	39	13	26	20	1.89
15905871--15905916	15	3.0	15	81	6	56	67	6	2	23	1.25
15906993--15907030	16	2.4	16	95	0	67	15	2	31	50	1.58
15907427--15907522	50	1.9	50	86	2	138	26	20	21	31	1.98
15907389--15907527	51	2.7	51	80	1	154	25	19	22	32	1.97
15907691--15908222	132	4.0	131	89	2	488	26	23	19	29	1.98
15907910--15908226	44	7.2	45	67	17	191	29	22	18	29	1.97
15907750--15909207	132	11.0	132	87	2	1839	28	24	17	29	1.97
15908392--15909179	44	17.9	44	65	10	259	29	24	16	29	1.97
15911402--15911480	37	2.1	38	83	7	97	13	6	6	73	1.23
15912255--15912320	25	2.6	25	85	9	80	59	7	15	18	1.59
15913377--15913627	59	4.3	59	99	0	493	57	8	16	17	1.63
15913707--15913734	5	5.6	5	100	0	56	64	0	0	35	0.94
15915937--15915998	13	4.6	13	73	15	63	30	3	9	56	1.47
15922270--15922319	26	1.9	25	84	8	64	40	6	12	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15926402--15926478	29	2.7	29	89	0	118	27	10	14	48	1.76
15929266--15929308	23	1.9	23	85	4	61	62	2	4	30	1.28
15930920--15930957	18	2.1	18	85	9	51	34	2	0	63	1.09
15931321--15931368	10	5.0	10	77	7	55	27	31	2	39	1.68
15931311--15931366	19	3.0	18	80	10	58	25	32	1	41	1.66
15931528--15931579	16	3.3	15	71	7	50	34	1	1	61	1.18
15934529--15934567	3	12.7	3	89	5	60	66	0	30	2	1.05
15935210--15935276	25	2.6	27	81	11	86	34	20	22	22	1.97
15938081--15938146	32	2.1	32	82	5	80	33	0	1	65	1.02
15941246--15941311	32	2.1	32	82	5	80	33	0	1	65	1.02
15944723--15944760	20	1.9	20	94	0	67	57	7	0	34	1.28
15944708--15944768	27	2.2	28	85	2	79	54	6	1	37	1.37
15945608--15945632	6	4.2	6	100	0	50	32	0	0	68	0.90
15946600--15946889	152	1.9	150	87	6	426	32	6	7	54	1.53
15946906--15947677	151	5.1	150	88	4	1101	51	7	10	31	1.63
15946906--15947677	303	2.5	301	90	4	1164	51	7	10	31	1.63
15948902--15948938	19	1.9	19	88	0	56	32	0	16	51	1.45
15949173--15949213	14	2.9	15	82	10	50	29	7	19	43	1.78
15950290--15950362	21	3.4	21	82	1	92	0	28	19	52	1.46
15953523--15953583	19	3.5	18	70	21	58	13	4	49	32	1.63
15953517--15953588	33	2.2	33	94	0	126	13	4	45	36	1.63
15958772--15959162	43	9.1	43	86	7	514	20	17	31	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15959947--15959992	23	2.0	23	95	0	83	56	19	10	13	1.66
15963893--15963945	21	2.5	21	84	9	72	28	35	9	26	1.87
15990417--15990441	13	1.9	13	100	0	50	68	24	0	8	1.16
15990696--15991006	164	1.9	164	100	0	622	19	17	18	45	1.86
15992561--15992593	16	2.0	17	88	5	50	24	27	0	48	1.51
15994515--15994619	44	2.5	40	76	15	113	31	29	4	34	1.78
15994513--15994622	45	2.6	44	81	8	131	31	29	5	33	1.80
15994603--15994654	16	3.2	16	91	0	77	34	34	0	30	1.58
16001093--16001117	2	12.5	2	100	0	50	52	48	0	0	1.00
16001485--16001540	15	3.7	15	71	4	51	64	5	3	26	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145