genome.fa.s13.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  39  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13963613--13963657	20	2.2	20	100	0	90	40	15	15	28	1.88
13963624--13963673	20	2.6	19	84	9	57	50	18	12	20	1.78
13970438--13970509	23	3.2	22	82	5	74	33	15	15	36	1.89
13970549--13970581	17	1.9	17	93	0	57	30	30	18	21	1.97
13970575--13970632	17	3.3	17	79	13	64	32	20	17	29	1.95
13970570--13970615	17	2.6	17	82	6	56	28	17	19	34	1.94
13970610--13970649	17	2.4	17	86	0	53	35	30	15	20	1.93
13971074--13971127	25	2.2	25	93	0	90	22	9	22	46	1.80
13974072--13974144	31	2.4	30	81	4	74	17	20	16	45	1.86
13974702--13974729	11	2.5	11	100	0	56	10	17	35	35	1.85
13981121--13981158	7	5.4	7	96	0	67	18	10	42	28	1.83
13984390--13984456	30	2.3	30	82	7	84	28	8	4	58	1.48
13989010--13989068	31	1.9	31	93	6	102	32	27	13	27	1.94
13990430--13990495	32	2.1	32	97	0	123	50	15	10	24	1.75
13990957--13990981	7	3.6	7	100	0	50	24	0	0	76	0.80
13994791--13994845	18	3.1	18	94	0	92	41	14	14	29	1.85
13996837--13996920	38	2.2	37	87	8	116	35	7	3	53	1.46
13998699--13998732	2	17.0	2	100	0	68	50	0	0	50	1.00
14004659--14004683	8	3.1	8	100	0	50	36	0	0	64	0.94
14010767--14010821	25	2.2	24	87	3	74	30	12	29	27	1.93
14031723--14031806	16	5.4	16	70	11	59	41	1	0	57	1.06
14031696--14031816	61	2.0	61	91	0	197	42	0	0	57	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14037232--14038522	644	2.0	644	98	0	2503	31	20	16	30	1.95
14040267--14040316	26	1.9	26	83	0	64	30	0	4	66	1.10
14042294--14042508	103	2.1	104	96	2	398	42	5	19	33	1.73
14045580--14046136	189	2.9	188	85	2	740	19	34	11	34	1.88
14047746--14047790	3	15.0	3	100	0	90	66	0	0	33	0.92
14055019--14055045	14	1.9	14	100	0	54	22	7	33	37	1.82
14065576--14065642	34	1.9	36	84	6	93	46	13	8	31	1.74
14065625--14065656	15	2.1	16	88	11	50	43	9	12	34	1.75
14069748--14069810	22	3.2	19	80	12	65	65	17	6	11	1.45
14070214--14070238	6	4.2	6	100	0	50	48	0	0	52	1.00
14083929--14083991	21	3.0	20	79	6	81	34	25	22	17	1.95
14089855--14090142	87	3.1	93	59	21	200	36	12	32	18	1.88
14089821--14090377	189	2.9	188	90	1	835	34	11	34	19	1.88
14091048--14091244	39	5.0	39	82	3	207	32	6	37	22	1.80
14093369--14093420	23	2.3	22	90	6	86	40	23	1	34	1.66
14094725--14094819	17	5.4	17	74	14	68	68	3	2	26	1.16
14094736--14094857	9	13.4	9	67	21	60	66	3	1	28	1.17
14095838--14095928	19	4.8	19	75	14	66	65	4	1	28	1.18
14095848--14095910	9	6.9	10	82	12	57	61	4	0	33	1.17
14095830--14095961	10	13.8	10	70	18	68	65	3	1	29	1.19
14105565--14105733	39	4.3	39	79	3	153	18	22	27	31	1.97
14105558--14105733	78	2.2	80	82	5	198	18	22	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14128896--14128935	6	6.7	6	86	11	55	20	0	0	80	0.72
14129302--14129375	32	2.3	32	80	15	82	28	2	5	63	1.30
14129342--14129548	26	8.2	26	73	10	144	28	7	4	59	1.44
14129364--14129423	28	2.3	27	81	13	72	33	8	0	58	1.28
14129442--14129548	50	2.1	52	85	3	146	28	7	4	59	1.44
14130633--14130752	21	5.7	22	68	9	72	17	22	17	42	1.89
14130633--14130771	63	2.2	63	82	0	161	17	21	17	42	1.89
14132703--14132753	14	3.8	13	81	5	57	11	21	17	49	1.79
14132703--14132761	27	2.1	28	84	9	77	10	20	20	49	1.77
14132723--14132761	14	2.8	13	85	11	51	10	20	20	48	1.78
14136092--14136247	25	6.3	25	74	5	129	32	23	26	17	1.97
14136108--14136265	49	3.2	50	77	8	135	32	22	26	18	1.97
14136188--14136271	25	3.4	25	74	12	82	32	20	27	20	1.97
14142852--14142899	25	1.9	25	87	8	71	33	25	22	18	1.97
14143085--14143140	23	2.3	23	84	6	67	41	19	19	19	1.91
14143378--14143417	21	1.9	21	84	0	53	45	22	0	32	1.53
14145067--14146030	482	2.0	482	99	0	1903	23	24	14	38	1.91
14157835--14157859	3	8.3	3	100	0	50	68	0	0	32	0.90
14158332--14158795	232	2.0	231	98	1	894	42	14	9	33	1.79
14163773--14163813	19	2.2	19	95	0	73	34	4	17	43	1.70
14163851--14163932	41	2.0	41	97	0	155	28	7	15	48	1.72
14164807--14165133	170	1.9	169	96	0	600	29	17	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14167791--14167831	19	2.2	19	95	0	73	36	4	12	46	1.63
14167869--14167949	41	2.0	41	97	0	153	30	6	13	49	1.67
14171523--14171563	22	2.0	21	90	9	66	48	2	0	48	1.14
14172830--14173075	122	2.0	123	99	0	485	52	10	10	26	1.68
14174436--14174605	85	2.0	85	98	0	331	49	13	8	28	1.71
14182339--14182374	14	2.6	14	90	0	63	25	25	30	19	1.98
14182659--14183090	125	3.5	123	87	3	605	28	19	22	30	1.98
14186725--14186767	19	2.2	20	80	12	54	55	0	11	32	1.36
14188447--14188697	44	5.9	43	70	11	142	24	19	22	33	1.97
14188477--14188707	127	1.8	128	85	4	333	24	18	23	33	1.97
14188718--14188977	128	2.0	128	89	0	394	24	23	20	31	1.98
14189051--14189516	86	5.4	86	88	1	664	25	23	21	29	1.99
14189228--14189362	43	3.1	43	68	16	125	27	24	20	27	1.99
14189639--14190069	171	2.5	173	88	5	636	29	22	18	29	1.97
14192257--14192337	39	2.0	41	85	7	112	7	11	6	75	1.19
14196682--14196724	19	2.2	20	80	12	54	55	0	11	32	1.36
14196715--14196763	2	25.0	2	81	4	55	48	2	2	46	1.25
14199059--14199244	22	8.3	22	72	14	139	22	1	30	46	1.59
14199143--14199188	7	6.6	7	79	18	51	15	0	36	47	1.45
14199143--14199188	14	3.3	14	79	11	58	15	0	36	47	1.45
14199143--14199202	28	2.1	28	87	3	84	18	1	35	45	1.60
14199175--14199245	21	3.3	21	88	2	97	23	2	29	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14199150--14199209	28	2.1	28	84	6	77	16	3	35	45	1.64
14199249--14199342	29	3.3	28	81	8	102	24	1	28	45	1.60
14199311--14199373	21	3.0	20	76	17	58	22	0	31	46	1.52
14199305--14199408	42	2.5	42	79	7	104	22	0	31	46	1.52
14199430--14199482	15	3.6	15	76	2	54	18	0	32	49	1.48
14199455--14199532	22	3.6	22	83	8	106	17	0	33	48	1.48
14200035--14200074	18	2.2	18	86	0	53	42	5	30	22	1.75
14200926--14200963	20	1.9	20	84	10	51	55	7	2	34	1.43
14207738--14207834	49	2.0	49	100	0	194	35	18	10	36	1.85
14207990--14208070	20	3.9	21	77	8	85	58	2	1	38	1.20
14210593--14210672	33	2.3	33	73	12	81	58	3	0	37	1.16
14219411--14219473	17	3.5	18	76	12	58	39	0	7	52	1.31
14219423--14219483	17	3.7	16	75	12	61	40	0	6	52	1.27
14220670--14220718	14	3.4	14	83	5	62	55	2	10	32	1.45
14220665--14220703	14	2.7	15	88	8	62	51	0	15	33	1.44
14236108--14236147	20	2.0	21	90	5	64	77	2	5	15	1.04
14237067--14237130	24	2.5	25	74	23	62	34	3	4	57	1.35
14239665--14239734	28	2.5	27	84	6	95	32	1	0	65	1.01
14250114--14250436	160	2.0	161	99	0	639	40	6	10	42	1.64
14252421--14252509	46	1.9	46	83	0	115	26	16	21	34	1.95
14254578--14254645	31	2.2	31	84	7	84	30	1	1	66	1.10
14254590--14254656	31	2.2	30	82	12	84	28	1	1	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14255114--14255178	34	1.9	34	100	0	130	50	16	3	29	1.60
14259589--14259759	58	2.9	58	81	5	184	35	6	8	49	1.58
14262995--14263044	25	2.0	25	100	0	100	28	20	12	40	1.87
14263002--14263068	25	2.6	25	85	7	80	31	16	7	44	1.75
14263160--14263232	29	2.5	29	77	2	83	30	20	5	43	1.74
14267203--14267270	33	2.1	33	94	0	118	36	10	17	35	1.84
14279971--14280213	129	1.9	129	90	1	389	43	19	14	23	1.87
14282330--14282362	17	1.9	17	93	0	57	33	24	6	36	1.80
14282375--14282438	32	2.0	31	81	3	74	50	9	10	29	1.69
14290861--14290898	19	2.0	19	89	0	58	31	10	31	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145