genome.fa.s13.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  124  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40855806--40855830	2	12.5	2	100	0	50	52	0	48	0	1.00
40856592--40856620	14	2.0	15	93	6	51	27	6	0	65	1.18
40861574--40861620	21	2.4	19	80	16	51	68	0	4	27	1.08
40863112--40863175	32	2.0	33	87	3	94	35	15	12	35	1.85
40867477--40867535	29	2.0	29	100	0	118	16	6	23	52	1.68
40870738--40870784	15	3.0	16	76	14	53	70	0	6	23	1.10
40870738--40870775	19	2.0	20	94	5	69	71	0	5	23	1.07
40872021--40872060	21	1.9	21	84	0	53	20	37	22	20	1.94
40875341--40875385	24	1.9	23	90	4	72	40	4	4	51	1.42
40879788--40879827	21	2.0	20	85	5	53	35	0	2	62	1.09
40882648--40882682	18	1.9	18	88	0	52	48	5	5	40	1.51
40891233--40891269	17	2.2	17	90	9	58	16	0	0	83	0.64
40891232--40891272	14	3.1	14	79	6	50	17	0	0	82	0.66
40894604--40894654	14	3.5	14	81	7	57	84	9	3	1	0.83
40894621--40894670	13	3.6	14	86	13	59	80	12	8	0	0.92
40895112--40895173	7	8.6	7	76	13	54	79	1	17	1	0.90
40895112--40895174	16	3.8	16	76	20	58	77	1	19	1	0.93
40895104--40895173	22	3.2	21	81	4	77	80	2	15	1	0.91
40896081--40896287	44	4.7	45	76	6	208	28	16	25	28	1.97
40896446--40896707	132	2.0	132	96	0	479	27	16	25	29	1.97
40896447--40896707	44	5.9	45	77	4	226	27	16	26	29	1.97
40896746--40896965	42	5.2	41	64	23	132	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40896758--40896980	44	5.2	44	64	23	150	24	24	24	27	2.00
40896716--40896936	42	5.2	41	65	23	125	25	25	23	25	2.00
40896712--40896994	86	3.3	86	98	0	548	25	24	24	26	2.00
40897276--40897461	95	2.0	93	85	4	248	27	17	24	30	1.97
40899025--40899061	17	2.2	17	90	9	58	16	0	0	83	0.64
40899024--40899064	14	3.1	14	79	6	50	17	0	0	82	0.66
40904267--40904298	16	2.0	16	100	0	64	50	12	31	6	1.65
40914888--40914917	3	10.0	3	92	0	51	33	3	0	63	1.11
40923427--40923496	27	2.6	27	93	4	115	40	10	0	50	1.36
40923581--40923648	27	2.5	27	92	0	109	29	30	25	14	1.95
40930161--40930199	20	2.0	21	85	10	55	66	10	0	23	1.22
40930345--40930445	27	3.7	27	88	2	132	18	28	27	24	1.98
40930510--40930580	27	2.6	27	91	6	108	50	0	9	39	1.36
40933346--40933550	44	4.4	46	69	20	122	30	20	21	27	1.98
40933386--40933839	44	10.0	44	71	12	269	32	21	19	26	1.97
40933337--40933775	138	3.2	138	85	2	605	30	21	20	26	1.98
40933530--40933872	182	1.9	182	82	1	427	32	21	19	25	1.97
40935771--40935969	105	1.9	105	88	4	303	31	18	14	36	1.90
40935778--40935998	105	2.1	104	79	8	234	33	17	13	35	1.89
40941411--40941436	10	2.6	10	100	0	52	84	0	0	15	0.62
40946867--40946905	20	2.0	20	85	10	53	33	0	2	64	1.08
40950488--40950531	20	2.1	22	87	8	65	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40951723--40951802	27	3.0	27	81	0	97	20	16	35	28	1.94
40952926--40952959	18	1.9	17	88	5	50	32	0	2	64	1.08
40953195--40953250	20	2.7	21	86	5	87	25	16	16	42	1.87
40953240--40953638	82	5.0	83	82	8	393	29	12	11	46	1.78
40953273--40953638	77	4.6	78	82	7	316	30	12	11	45	1.77
40953273--40953679	77	5.1	75	80	9	280	30	12	11	45	1.77
40955973--40956006	16	2.1	16	88	0	50	41	2	2	52	1.31
40959573--40959605	15	2.2	15	100	0	66	6	48	6	39	1.53
40972431--40972461	3	10.3	3	100	0	62	32	0	0	67	0.91
40983544--40983609	29	2.3	27	73	19	62	46	15	3	34	1.61
40995057--40995087	16	1.9	16	93	0	53	51	6	6	35	1.53
40995343--40995376	17	2.0	17	88	0	50	47	0	0	52	1.00
40998979--40999194	51	4.3	51	90	0	317	31	14	24	29	1.95
41007429--41007672	126	1.9	126	86	3	348	33	16	15	34	1.91
41008101--41008136	17	2.2	17	95	5	65	50	33	5	11	1.61
41012090--41012215	63	2.0	63	100	0	252	42	17	6	33	1.74
41014627--41014661	18	2.0	17	88	5	52	45	0	0	54	0.99
41014822--41014916	45	2.1	44	88	1	136	33	27	6	32	1.82
41014895--41014932	16	2.4	16	90	0	58	34	34	0	31	1.58
41016975--41017008	3	11.3	3	100	0	68	67	0	0	32	0.91
41028188--41028224	17	2.3	17	86	9	51	10	0	10	78	0.97
41030975--41031030	22	2.5	22	82	8	69	66	12	7	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41036994--41037051	19	2.7	22	79	10	59	36	6	17	39	1.76
41038535--41038559	13	1.9	13	100	0	50	40	0	8	52	1.31
41045707--41045760	18	2.9	18	81	13	65	14	1	42	40	1.57
41046765--41046839	22	3.4	22	87	3	107	28	29	0	42	1.56
41046789--41046891	52	2.0	51	83	9	129	33	32	0	34	1.58
41046841--41046882	22	1.9	22	90	0	66	33	33	0	33	1.58
41046924--41046979	28	2.0	29	92	3	96	37	0	1	60	1.07
41046924--41046987	28	2.2	29	88	2	94	37	0	1	60	1.06
41048760--41048807	24	2.0	24	87	0	69	29	35	16	18	1.93
41049093--41049422	29	11.5	29	80	4	341	45	24	0	29	1.58
41049309--41049422	23	4.4	23	72	23	102	42	27	0	30	1.56
41049093--41049409	59	5.4	59	89	1	417	45	23	0	30	1.58
41049367--41049422	23	2.4	23	100	0	112	42	30	0	26	1.56
41052521--41052878	124	2.9	124	96	2	641	30	22	16	29	1.96
41055712--41055770	30	2.0	30	82	0	73	69	5	6	18	1.30
41056895--41056933	20	2.0	20	89	0	60	61	0	0	38	0.96
41058407--41058632	43	5.3	42	76	5	186	30	16	15	36	1.90
41058505--41058599	42	2.3	42	85	3	120	30	16	17	34	1.93
41058407--41058625	84	2.6	86	79	5	230	30	16	15	36	1.90
41073943--41074018	23	3.3	23	88	0	116	31	25	19	23	1.98
41075186--41075296	41	2.8	40	89	5	156	24	19	22	33	1.97
41075224--41075321	41	2.4	41	89	1	144	27	17	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41076898--41076945	23	2.1	23	88	0	69	25	29	16	29	1.97
41079660--41079775	45	2.6	45	78	5	126	43	15	18	21	1.87
41079757--41079918	45	3.6	45	83	3	191	47	12	17	22	1.81
41079795--41079967	92	1.9	92	80	2	204	45	13	20	20	1.85
41084565--41084597	14	2.3	15	89	5	50	21	9	18	51	1.73
41085624--41085749	40	3.2	40	100	0	252	10	19	17	53	1.72
41086080--41086245	40	4.2	40	100	0	332	10	19	17	53	1.72
41085321--41086205	456	1.9	456	100	0	1770	26	12	17	43	1.85
41088487--41088516	2	15.0	2	92	0	51	50	0	3	46	1.18
41091132--41091158	2	13.5	2	100	0	54	51	0	0	48	1.00
41092365--41092404	17	2.2	17	86	8	53	67	2	0	30	1.04
41094522--41094624	53	1.9	53	100	0	206	25	19	14	40	1.89
41105784--41108154	81	29.3	81	100	0	4742	39	9	11	39	1.74
41111186--41111281	36	2.7	36	88	6	142	37	14	22	25	1.92
41114483--41114719	119	2.0	119	99	0	465	18	18	18	43	1.88
41114773--41114806	16	2.1	16	88	0	50	67	2	14	14	1.34
41117131--41117190	25	2.4	25	88	2	86	18	1	23	56	1.50
41118953--41119142	63	3.0	63	93	3	330	32	13	23	30	1.93
41118956--41119142	61	3.0	61	94	1	320	32	13	23	29	1.94
41126527--41126556	2	15.0	2	92	0	51	46	0	3	50	1.18
41133446--41133488	17	2.4	19	85	11	56	41	2	0	55	1.12
41136328--41136440	60	1.9	60	86	0	163	25	13	9	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41136644--41136675	4	7.8	4	96	3	55	75	3	0	21	0.95
41136848--41136986	31	4.5	32	76	15	141	44	11	19	24	1.83
41136793--41136986	91	2.1	92	85	4	268	43	13	20	22	1.87
41144561--41144637	29	2.5	31	87	4	104	46	12	14	25	1.80
41145016--41145092	27	2.9	27	82	0	91	22	27	24	25	2.00
41145176--41145226	18	2.8	18	84	0	75	68	0	27	3	1.07
41149300--41149374	3	25.7	3	94	5	136	0	33	0	66	0.92
41149526--41149584	31	1.9	31	92	0	100	18	35	27	18	1.94
41156149--41156210	23	2.7	23	80	11	65	75	3	14	6	1.12
41161198--41161226	9	3.3	9	95	4	51	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145