genome.fa.s13.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  87  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29614882--29614922	17	2.4	18	80	8	50	68	0	2	29	1.03
29619311--29619353	18	2.4	18	92	0	68	41	2	41	13	1.57
29624456--29624529	29	2.5	31	79	14	84	63	2	1	32	1.17
29624474--29624538	29	2.2	28	79	12	69	66	3	3	27	1.22
29624736--29624799	24	2.5	26	80	10	78	34	6	35	23	1.80
29629055--29629114	20	2.9	22	80	16	74	26	10	3	60	1.45
29629096--29629192	29	3.4	29	70	18	87	31	9	2	56	1.42
29629152--29629199	19	2.5	19	89	0	69	37	4	2	56	1.30
29629227--29629259	9	3.7	9	100	0	66	54	0	0	45	0.99
29630524--29630579	18	3.2	18	73	16	55	48	0	1	50	1.11
29635047--29635089	13	3.3	12	81	15	50	13	0	4	81	0.84
29635556--29636933	44	31.7	44	67	11	245	27	24	19	28	1.98
29635421--29636942	218	7.0	218	87	1	2002	27	24	18	28	1.98
29635423--29636942	435	3.5	436	89	1	2176	27	24	18	28	1.98
29640831--29640869	20	1.9	20	89	5	60	35	15	7	41	1.76
29647791--29647848	24	2.3	25	79	8	64	62	15	10	12	1.55
29649024--29650264	619	2.0	619	92	2	2091	47	10	9	32	1.69
29651853--29651895	14	3.2	13	81	12	50	11	0	4	83	0.78
29655276--29655314	20	2.0	20	90	10	62	53	7	2	35	1.43
29657601--29657761	26	6.2	26	83	5	202	23	28	9	37	1.87
29657561--29657761	52	3.9	51	84	2	204	24	29	10	35	1.89
29657601--29657761	77	2.1	78	89	3	245	23	28	9	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29669285--29669318	6	5.7	6	100	0	68	32	32	0	35	1.58
29673759--29673809	20	2.5	21	78	15	61	54	0	1	43	1.11
29677000--29677048	10	5.0	10	77	18	50	77	2	12	8	1.07
29701056--29701171	54	2.1	54	80	0	124	20	27	25	26	1.99
29707207--29707270	32	2.0	32	96	0	119	28	9	17	45	1.79
29712418--29712492	36	2.1	36	100	0	150	46	5	13	34	1.66
29736171--29736215	20	2.3	19	84	7	54	24	33	11	31	1.90
29738844--29738896	23	2.4	22	75	9	54	9	18	1	69	1.25
29738889--29738928	18	2.2	18	86	0	53	7	25	2	65	1.32
29757619--29758024	131	3.1	130	82	3	476	34	13	14	37	1.85
29761797--29761844	21	2.3	21	88	0	69	27	29	4	39	1.75
29773761--29773847	38	2.3	39	80	7	99	20	14	8	56	1.64
29784538--29784724	45	4.2	45	86	4	247	32	28	17	21	1.96
29784544--29784724	89	2.0	88	87	3	256	31	29	17	21	1.96
29788938--29789127	56	3.4	56	100	0	380	27	18	26	26	1.98
29791861--29791904	24	1.9	24	90	9	74	36	0	2	61	1.09
29792795--29792824	13	2.2	14	94	5	53	73	13	0	13	1.10
29793045--29793148	43	2.5	42	88	3	147	28	17	29	24	1.97
29793302--29793331	13	2.2	14	94	5	53	73	13	0	13	1.10
29794581--29794616	3	12.0	3	100	0	72	33	0	0	66	0.92
29810760--29810883	25	5.0	25	79	7	126	29	20	23	26	1.99
29810760--29810883	50	2.5	50	82	5	153	29	20	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29814851--29815052	41	4.9	40	80	4	172	37	16	24	22	1.94
29814874--29815052	81	2.2	82	82	1	207	36	17	23	22	1.94
29814958--29815018	21	3.0	21	64	11	54	34	14	26	24	1.94
29821179--29821443	131	2.0	131	93	1	451	40	21	4	34	1.72
29821679--29821842	41	4.0	41	86	0	222	35	18	26	19	1.95
29821700--29821764	21	3.1	21	68	12	62	32	16	29	21	1.96
29833249--29833318	25	2.8	25	86	0	95	42	15	22	18	1.88
29836603--29836995	196	2.0	196	99	0	777	36	7	17	38	1.78
29844867--29844984	54	2.2	54	87	6	168	42	8	25	23	1.82
29844870--29845057	27	6.9	27	78	6	139	40	8	26	25	1.84
29847403--29847441	12	3.2	12	85	0	51	17	20	5	56	1.60
29847663--29847773	50	2.2	49	82	7	136	23	23	19	33	1.97
29847693--29847879	50	3.6	50	79	4	167	23	28	20	27	1.99
29857805--29857858	16	3.6	16	68	14	51	16	31	25	25	1.97
29857804--29857878	29	2.6	29	95	0	132	16	30	25	28	1.96
29860055--29860100	17	2.6	17	82	3	56	39	6	0	54	1.26
29866693--29866721	15	1.9	15	100	0	58	58	0	27	13	1.36
29869283--29869566	138	2.1	138	92	0	469	41	7	5	46	1.54
29870948--29871018	21	3.2	20	71	21	70	38	5	19	36	1.76
29884564--29884599	17	2.1	17	100	0	72	22	11	22	44	1.84
29891032--29891063	16	2.0	16	93	0	55	25	15	0	59	1.36
29893054--29893105	27	1.9	27	92	0	86	34	32	19	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29892918--29893313	102	3.9	102	88	2	587	33	28	18	18	1.95
29893127--29893281	33	4.6	33	68	23	99	36	27	18	16	1.93
29892918--29893314	205	1.9	205	92	1	670	33	28	18	19	1.96
29893260--29893310	27	1.9	27	92	4	86	31	31	21	15	1.95
29899516--29899895	51	7.5	50	76	8	256	30	25	15	28	1.95
29899507--29899951	102	4.4	100	80	7	431	30	26	15	27	1.96
29899506--29899960	153	3.0	151	76	7	431	30	26	15	27	1.96
29899501--29899984	203	2.4	199	78	10	516	30	26	14	27	1.95
29909769--29909815	7	6.6	7	87	4	67	72	0	10	17	1.12
29911047--29911768	88	8.2	88	88	1	1004	27	24	25	22	2.00
29911281--29911773	44	11.2	42	65	16	112	25	24	26	23	2.00
29911289--29911517	45	5.1	47	61	19	112	26	22	26	24	2.00
29912748--29912794	20	2.4	19	82	3	58	51	0	21	27	1.48
29919546--29919602	26	2.2	26	90	3	89	15	22	24	36	1.94
29928377--29928424	20	2.4	20	89	0	69	25	31	16	27	1.97
29928376--29928426	10	5.1	10	76	6	50	25	29	15	29	1.96
29929116--29929163	21	2.3	21	82	7	53	33	4	16	45	1.67
29946915--29947022	54	2.0	53	90	1	171	25	8	12	53	1.65
29946935--29947022	28	3.2	27	68	12	72	28	7	11	52	1.65
29947642--29947676	18	1.9	18	88	11	54	20	0	5	74	1.02
29951393--29951426	14	2.4	14	85	0	50	23	0	2	73	0.97
29951407--29951469	21	3.0	21	80	19	69	25	4	1	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29953139--29953201	6	10.8	6	77	6	58	17	4	4	73	1.19
29953133--29953177	17	2.7	16	80	10	54	17	6	2	73	1.15
29959925--29959999	33	2.2	34	88	2	107	37	6	13	42	1.70
29961899--29961948	23	2.2	23	100	0	100	12	16	22	50	1.77
29983295--29983403	28	3.9	28	90	0	146	29	24	22	22	1.99
29983702--29984219	27	19.2	27	82	4	528	22	16	17	44	1.87
29986641--29987087	39	11.5	39	88	1	639	29	2	21	46	1.65
29992337--29992393	20	2.9	20	84	2	71	26	35	15	22	1.94
29995009--29995104	6	15.5	6	66	10	50	70	3	18	7	1.24
29995009--29995104	18	5.2	18	71	6	75	70	3	18	7	1.24
29996818--29996874	20	2.9	20	84	2	71	26	35	15	22	1.94
29998610--29998993	39	9.8	39	93	0	581	28	3	21	46	1.68
30001097--30001136	19	2.0	22	85	14	59	25	0	25	50	1.50
30001272--30001311	21	1.9	21	94	0	71	42	10	10	37	1.72
30002511--30002643	66	2.0	66	91	0	212	38	10	17	33	1.84
30017352--30017395	21	2.1	21	87	8	63	40	11	11	36	1.77
30018994--30019072	35	2.3	35	88	4	115	43	13	13	29	1.83
30029904--30029996	19	5.1	19	69	12	68	29	8	13	48	1.73
30029880--30030006	54	2.4	54	89	0	191	32	7	14	44	1.74
30030100--30030137	9	4.0	9	87	12	58	21	0	21	57	1.40
30030106--30030137	11	3.1	11	91	8	50	18	0	18	62	1.33
30030237--30030300	21	2.9	22	80	11	76	35	9	18	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30036164--30036201	19	2.0	20	94	5	69	36	10	34	18	1.85
30040361--30040402	10	3.7	12	81	18	54	69	2	16	11	1.29
30040422--30040461	17	2.3	17	82	4	53	70	5	17	7	1.30
30040445--30040486	12	3.8	12	81	15	54	69	0	19	11	1.19
30040431--30040558	38	3.2	38	65	26	100	63	3	21	12	1.42
30040506--30040545	17	2.3	17	82	4	53	70	5	17	7	1.30
30040369--30040557	84	2.2	84	100	0	378	64	3	19	13	1.42
30047912--30047954	23	1.9	21	86	13	59	60	2	20	16	1.46
30047946--30047995	16	3.1	16	75	13	57	56	8	24	12	1.62
30060397--30060431	16	2.2	16	90	10	54	51	2	17	28	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145