genome.fa.s13.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  133  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43701452--43701502	3	17.3	3	77	4	50	58	1	1	37	1.20
43703659--43703824	44	3.8	45	78	5	169	25	24	21	28	1.99
43705971--43706037	25	2.7	26	71	13	70	7	13	2	76	1.12
43715556--43715588	16	2.0	17	88	5	50	48	0	0	51	1.00
43738622--43738655	7	4.9	7	100	0	68	29	26	0	44	1.55
43742477--43742528	24	2.2	24	89	0	77	55	9	1	32	1.43
43744026--43744055	15	2.0	15	100	0	60	40	20	13	26	1.89
43744291--43744342	24	2.2	24	89	0	77	55	9	1	32	1.43
43751348--43751406	25	2.3	26	82	5	66	66	3	6	23	1.32
43751366--43751406	13	3.0	14	79	17	50	70	2	4	21	1.18
43751824--43751862	19	2.1	19	90	9	62	38	0	0	61	0.96
43751826--43751869	19	2.2	20	84	8	54	38	0	0	61	0.96
43779907--43779944	20	1.9	19	94	5	67	47	5	5	42	1.48
43785411--43785441	16	2.0	15	93	6	53	32	12	29	25	1.93
43785465--43785553	44	2.0	44	100	0	178	16	17	15	49	1.80
43788582--43788718	52	2.7	50	77	10	125	38	19	5	36	1.74
43790403--43790890	243	2.0	244	96	0	897	37	17	20	24	1.94
43791483--43791529	22	2.1	22	84	7	60	55	4	4	36	1.39
43791805--43791832	12	2.3	12	100	0	56	0	7	0	92	0.37
43794091--43794161	29	2.5	28	72	4	70	54	12	4	28	1.56
43798811--43798839	5	5.8	5	100	0	58	20	0	0	79	0.74
43802086--43802226	51	2.8	50	77	10	135	37	18	5	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43804653--43805168	258	2.0	259	96	1	953	33	16	21	28	1.95
43805249--43805545	148	2.0	148	100	0	594	44	16	19	20	1.87
43809742--43809769	13	2.2	13	100	0	56	46	0	0	53	1.00
43810030--43810065	17	2.1	17	100	0	72	19	16	30	33	1.94
43813340--43813409	34	2.1	34	97	0	131	24	37	20	18	1.94
43818583--43818698	51	2.3	51	82	5	146	36	18	5	40	1.73
43823088--43823112	11	2.3	11	100	0	50	44	0	0	56	0.99
43823462--43823502	16	2.6	16	96	0	73	46	4	2	46	1.37
43823476--43823537	22	2.7	23	85	5	81	46	1	1	50	1.20
43826824--43826855	4	8.0	4	100	0	64	50	25	0	25	1.50
43835862--43835908	16	2.9	16	77	20	53	14	8	0	76	1.01
43837205--43837251	21	2.2	21	85	7	60	25	4	4	65	1.29
43837471--43837608	64	2.2	61	85	8	188	35	7	0	55	1.34
43837487--43837639	60	2.5	62	80	8	177	34	9	0	55	1.36
43839738--43839778	18	2.2	19	91	4	66	65	19	7	7	1.41
43850227--43850267	4	10.2	4	94	0	73	46	24	2	26	1.65
43850354--43850591	119	2.0	119	99	0	467	30	18	16	34	1.93
43850917--43851003	44	2.0	44	86	4	122	34	11	25	28	1.91
43853163--43853189	2	13.5	2	100	0	54	48	0	0	51	1.00
43853242--43853275	18	1.9	17	94	5	59	52	0	8	38	1.33
43853560--43853584	12	2.1	12	100	0	50	36	32	8	24	1.84
43855466--43855521	20	2.8	20	82	12	62	76	1	10	10	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43856082--43856217	51	2.7	50	78	8	141	37	19	5	37	1.74
43857880--43858303	108	3.9	108	90	3	651	34	20	16	28	1.94
43875133--43875171	3	12.7	3	89	5	60	30	0	2	66	1.05
43881304--43881867	88	6.4	88	88	0	833	27	23	25	23	2.00
43881304--43881867	263	2.1	264	89	0	851	27	23	25	23	2.00
43881852--43881980	44	2.9	44	75	11	136	30	15	24	29	1.96
43881285--43881964	351	1.9	349	83	3	857	27	22	24	24	2.00
43881986--43882147	44	3.7	44	80	8	175	29	18	23	28	1.98
43881988--43882113	45	2.8	44	84	5	164	31	18	22	27	1.97
43883366--43883421	3	18.7	3	96	0	103	32	1	0	66	1.03
43883420--43883445	3	8.7	3	100	0	52	0	0	30	69	0.89
43883827--43883864	13	2.8	14	80	19	53	21	7	5	65	1.38
43885028--43885248	110	2.0	111	99	0	435	46	9	21	22	1.81
43896942--43897415	237	2.0	237	96	0	876	37	13	19	29	1.89
43897974--43898001	2	14.0	2	100	0	56	50	0	0	50	1.00
43898646--43898677	16	2.0	16	100	0	64	31	25	12	31	1.92
43900504--43900539	4	9.0	4	100	0	72	25	0	0	75	0.81
43902575--43902879	152	2.0	153	98	1	587	41	13	9	35	1.77
43903071--43903129	29	2.1	29	83	3	75	28	3	3	64	1.26
43905428--43905486	29	2.1	29	83	3	75	28	3	3	64	1.26
43913090--43913152	14	4.2	14	75	15	63	60	0	1	38	1.07
43920927--43921091	82	2.0	83	98	1	323	26	9	14	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43921050--43921092	18	2.5	17	80	3	50	32	0	4	62	1.15
43921336--43921401	23	3.1	21	71	24	59	9	12	10	68	1.40
43922706--43922733	14	2.0	14	100	0	56	57	7	0	35	1.26
43925137--43925255	51	2.3	51	76	0	130	35	16	6	41	1.75
43927825--43927875	21	2.5	21	87	3	68	45	3	1	49	1.32
43927838--43927880	21	2.0	21	100	0	86	37	4	0	58	1.19
43928519--43928561	18	2.5	17	80	3	50	32	0	4	62	1.15
43931758--43931787	11	2.7	11	89	0	51	20	6	6	66	1.38
43932383--43932447	31	2.1	31	91	0	103	55	12	7	24	1.63
43934761--43934816	15	3.9	14	70	21	53	57	0	1	41	1.09
43934762--43934815	7	7.6	7	80	15	58	57	0	1	40	1.09
43934753--43934814	8	8.6	8	73	22	50	59	0	1	38	1.07
43936896--43936938	8	5.6	8	81	10	54	65	0	2	32	1.06
43937783--43937823	18	2.3	18	80	12	50	24	0	2	73	0.96
43946842--43946978	67	2.0	67	95	2	249	40	1	16	41	1.57
43954767--43954808	20	2.2	20	82	4	50	30	2	2	64	1.19
43957197--43957224	10	2.8	10	100	0	56	28	10	21	39	1.87
43959318--43959345	10	2.8	10	100	0	56	28	10	21	39	1.87
43960516--43960604	3	28.7	3	83	8	99	65	2	5	26	1.27
43961596--43961630	17	2.1	17	89	10	54	5	5	40	48	1.51
43962015--43962209	95	2.1	95	91	0	309	27	25	17	29	1.97
43962109--43962421	132	2.4	132	87	1	475	29	24	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43962503--43962761	50	5.2	49	69	11	188	23	19	22	34	1.97
43962503--43962820	99	3.2	99	86	4	435	23	20	22	33	1.97
43962529--43962789	50	5.3	49	69	9	190	23	20	22	32	1.98
43962902--43963011	45	2.4	46	72	13	111	22	23	22	30	1.99
43963223--43963529	45	6.9	44	65	15	130	23	23	22	30	1.99
43962858--43963617	87	8.7	87	79	8	724	24	23	22	29	1.99
43965690--43965728	7	5.7	7	90	6	62	12	0	10	76	1.01
43965697--43965741	14	3.4	14	88	11	60	8	0	13	77	0.98
43972683--43973044	4	90.5	4	100	0	724	50	24	0	25	1.50
43975808--43975834	11	2.5	11	100	0	54	55	0	0	44	0.99
43976034--43976290	53	5.3	52	68	23	197	50	7	4	38	1.49
43976046--43976295	93	2.7	93	94	1	430	49	6	4	39	1.49
43976131--43976296	44	3.6	45	76	18	189	48	5	4	40	1.47
43976302--43976341	17	2.4	17	87	8	55	45	7	15	32	1.74
43976359--43976415	16	3.6	16	90	0	87	45	3	3	47	1.37
43976389--43976450	22	2.7	23	90	5	90	48	1	1	48	1.21
43976874--43976928	27	2.0	27	100	0	110	18	25	14	41	1.88
43986940--43986973	2	17.5	2	93	6	61	50	0	0	50	1.00
44002311--44002466	77	2.0	76	96	1	285	44	14	3	37	1.63
44004910--44004971	29	2.1	28	82	5	70	25	14	14	45	1.83
44006569--44006651	29	3.0	26	76	20	71	69	1	7	21	1.19
44008701--44008734	17	2.1	16	88	5	50	17	0	2	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44009280--44009308	3	9.7	3	100	0	58	34	0	0	65	0.93
44009551--44009619	25	2.7	27	78	14	76	27	7	0	65	1.19
44009323--44009741	200	2.0	207	90	7	667	33	10	3	53	1.51
44012628--44012665	20	1.9	20	94	0	67	23	28	13	34	1.92
44014026--44014056	16	1.9	16	93	0	53	54	0	0	45	0.99
44014652--44014680	13	2.2	13	100	0	58	37	6	17	37	1.76
44018672--44018722	22	2.3	23	86	3	68	50	3	1	43	1.31
44018699--44018736	16	2.4	16	90	0	58	47	5	5	42	1.48
44018776--44019106	83	4.0	83	97	1	617	38	5	6	49	1.50
44022882--44022963	31	2.7	30	77	19	89	29	8	9	52	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145