genome.fa.s13.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  135  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44372776--44372832	28	2.0	28	96	0	105	57	12	7	22	1.58
44375774--44375807	16	2.1	16	88	0	50	58	2	0	38	1.13
44380137--44380199	18	3.6	18	82	4	83	25	31	19	23	1.98
44380139--44380193	17	3.2	16	84	7	65	25	30	18	25	1.98
44380127--44380199	35	2.2	33	85	9	94	24	30	20	24	1.99
44380232--44380293	18	3.6	18	77	16	76	24	32	20	22	1.98
44380232--44380397	52	3.2	52	63	24	132	24	30	19	25	1.98
44380347--44380397	18	2.9	18	80	13	63	23	31	19	25	1.98
44380258--44380419	52	3.1	52	61	25	124	24	30	17	27	1.97
44380284--44380449	52	3.2	52	63	24	132	24	28	18	27	1.98
44380371--44380600	70	3.3	70	71	17	251	24	28	19	27	1.98
44380440--44380536	18	5.6	18	77	11	112	23	29	20	25	1.99
44380201--44380461	104	2.5	104	97	2	506	24	27	19	28	1.99
44380446--44380536	34	2.6	35	82	8	123	23	28	20	27	1.99
44380272--44380721	121	3.7	121	78	10	558	24	28	18	28	1.98
44380580--44380657	34	2.3	35	93	2	131	24	30	19	25	1.98
44380579--44380657	17	4.6	18	78	9	101	24	31	18	25	1.98
44380700--44380745	18	2.6	18	89	0	74	23	32	21	21	1.98
44380614--44380787	88	2.0	87	95	1	312	24	28	18	28	1.98
44381836--44381873	6	6.3	6	93	0	67	2	0	50	47	1.15
44396079--44396128	18	2.7	18	87	12	75	64	0	0	36	0.94
44398994--44399021	3	9.3	3	100	0	56	32	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44399062--44399105	4	11.0	4	100	0	88	25	0	25	50	1.50
44408654--44408716	21	3.0	21	83	2	74	36	23	23	15	1.94
44408688--44408762	23	3.4	22	78	7	80	36	18	21	24	1.95
44409104--44409135	16	1.9	17	93	6	57	25	21	0	53	1.46
44409846--44409891	6	7.7	6	92	0	65	52	0	0	47	1.00
44409846--44409907	18	3.5	18	82	6	74	51	1	0	46	1.10
44410163--44410200	18	2.0	19	90	10	60	47	5	0	47	1.24
44410163--44410209	19	2.5	20	80	16	55	44	4	2	48	1.34
44411545--44411610	30	2.2	29	84	7	87	31	13	7	46	1.71
44411556--44411615	30	2.0	30	96	0	111	33	11	8	46	1.70
44421703--44421766	26	2.4	26	97	2	119	43	0	3	53	1.16
44423182--44423240	31	1.9	30	86	3	82	20	5	32	42	1.74
44423757--44423829	36	2.0	37	84	12	98	43	0	5	50	1.25
44423785--44423832	14	3.4	14	78	18	55	47	0	2	50	1.12
44425819--44425974	52	3.0	51	83	5	188	35	12	15	37	1.85
44428579--44428630	16	3.1	16	73	15	52	71	0	0	28	0.87
44441581--44441613	13	2.5	13	100	0	66	39	0	0	60	0.97
44442142--44442183	22	1.9	22	100	0	84	52	7	9	30	1.61
44450600--44450715	51	2.3	51	92	0	187	33	16	23	26	1.95
44456607--44456754	10	15.3	10	66	16	55	35	3	2	58	1.29
44456607--44456659	19	2.7	20	82	2	63	32	3	1	62	1.24
44456607--44456775	9	17.4	9	67	17	81	34	3	2	59	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44469098--44469136	15	2.5	16	83	4	53	79	2	0	17	0.84
44472630--44472706	31	2.5	31	82	0	91	41	15	11	31	1.83
44473468--44473507	19	2.1	19	85	0	53	35	7	2	55	1.42
44473776--44473840	23	2.9	22	84	6	94	36	32	0	30	1.58
44478951--44478996	18	2.5	19	85	3	67	65	2	2	30	1.16
44483669--44483711	22	2.0	22	90	0	68	23	2	0	74	0.93
44483660--44483741	42	2.0	41	82	2	101	24	2	0	73	0.96
44492213--44492798	292	2.0	292	99	0	1156	28	19	24	26	1.99
44520767--44523709	600	4.9	600	99	0	5859	36	12	12	38	1.82
44525958--44525988	15	2.1	15	100	0	62	19	19	22	38	1.93
44533682--44533746	31	2.1	31	88	0	94	50	7	4	36	1.52
44538400--44538426	14	1.9	14	100	0	54	48	0	14	37	1.45
44538602--44538815	23	9.3	23	83	0	248	26	19	23	30	1.98
44539252--44539314	31	2.1	30	85	8	83	49	3	3	44	1.34
44542974--44543312	168	2.0	169	99	0	671	32	10	10	46	1.73
44544626--44544736	21	5.2	21	78	6	98	30	6	3	59	1.39
44544624--44544680	3	19.0	3	96	0	105	33	1	0	64	1.04
44544852--44544884	14	2.4	14	94	0	57	39	0	3	57	1.14
44545128--44545170	8	5.4	8	85	0	50	16	0	4	79	0.90
44546825--44546862	19	2.0	19	100	0	76	36	31	15	15	1.90
44546966--44547013	21	2.3	21	100	0	96	8	29	8	54	1.60
44555184--44555451	104	2.6	104	85	3	360	19	20	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44563210--44563244	18	1.9	18	94	0	61	37	42	17	2	1.64
44564301--44564346	3	15.0	3	86	4	65	32	2	2	63	1.19
44564502--44564537	16	2.2	16	95	0	63	41	2	5	50	1.40
44569189--44569301	42	2.6	42	76	9	120	75	6	10	7	1.19
44569207--44569243	20	1.9	20	88	5	58	81	8	2	8	0.97
44569649--44569692	20	2.2	20	84	8	54	75	0	13	11	1.06
44584382--44584887	87	5.8	87	96	0	832	29	23	22	24	1.99
44584703--44584839	43	3.2	43	65	17	120	29	26	21	22	1.99
44584966--44585373	44	9.6	44	69	9	238	30	21	22	25	1.99
44584922--44585194	127	2.1	127	85	0	357	29	23	21	25	1.99
44585093--44585278	84	2.2	84	88	0	264	28	22	21	27	1.99
44584959--44585396	211	2.1	211	94	0	759	29	23	21	25	1.99
44586737--44586782	3	15.0	3	86	4	65	32	2	2	63	1.19
44586938--44586973	16	2.2	16	95	0	63	41	2	5	50	1.40
44588416--44588442	9	3.0	9	100	0	54	44	11	0	44	1.39
44621401--44621458	31	1.9	30	93	6	100	63	6	10	18	1.47
44626744--44626854	57	1.9	58	83	1	143	44	14	15	26	1.84
44631715--44631771	22	2.6	22	100	0	114	45	7	14	33	1.71
44633894--44634017	60	2.1	60	95	0	221	27	17	13	41	1.87
44639734--44639772	19	2.1	19	95	0	69	30	17	28	23	1.97
44644774--44644804	12	2.6	12	94	0	53	25	9	22	41	1.84
44646837--44646876	14	3.0	14	85	10	57	70	2	0	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44646830--44646878	6	7.7	6	80	11	53	65	2	2	30	1.15
44647757--44647790	10	3.4	10	83	0	50	61	17	2	17	1.46
44652282--44652365	24	3.5	24	70	14	64	22	30	19	27	1.98
44654890--44654929	20	2.0	20	90	0	62	50	10	10	30	1.69
44654878--44654944	34	1.9	35	87	3	100	46	11	8	32	1.72
44654913--44654952	14	2.9	14	84	0	53	42	15	7	35	1.75
44655567--44655727	54	2.8	59	84	11	233	31	17	21	30	1.96
44661799--44661839	21	1.9	22	90	5	66	21	14	12	51	1.75
44669197--44669221	2	12.5	2	100	0	50	48	0	0	52	1.00
44672636--44673016	190	2.0	190	98	1	746	35	15	14	33	1.89
44678560--44678605	23	1.9	25	86	8	69	41	13	8	36	1.75
44679579--44679616	15	2.4	16	95	4	69	18	5	10	65	1.41
44682502--44682537	5	7.2	5	100	0	72	80	0	0	19	0.71
44683314--44683346	16	2.0	17	88	5	50	63	0	3	33	1.10
44684053--44684099	23	2.1	23	92	4	78	23	10	12	53	1.70
44684147--44684280	31	4.7	30	68	25	92	33	2	17	47	1.60
44684098--44684358	82	3.2	82	92	1	418	33	1	17	47	1.59
44684178--44684277	51	2.0	51	80	11	116	33	2	17	48	1.58
44685711--44685866	77	2.0	78	96	2	287	41	12	12	33	1.82
44687206--44687246	19	2.4	17	81	18	50	46	0	0	53	1.00
44687994--44689852	929	2.0	929	99	0	3691	33	18	16	32	1.93
44690272--44690296	13	1.9	13	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44697279--44697316	19	2.0	19	85	10	51	28	7	26	36	1.84
44697397--44697434	16	2.5	15	84	16	51	23	2	2	71	1.12
44713174--44713221	14	3.2	14	80	13	51	75	6	0	18	1.01
44713475--44713533	15	4.0	15	78	10	59	49	1	13	35	1.52
44713482--44713539	30	1.9	30	92	0	98	48	3	13	34	1.60
44715884--44715931	21	2.2	21	85	7	60	43	2	10	43	1.50
44729669--44729711	18	2.3	19	80	19	54	41	2	0	55	1.12
44730972--44731019	25	1.9	25	95	0	87	37	10	0	52	1.36
44731060--44731145	27	3.2	27	86	4	113	30	20	27	20	1.98
44731219--44731257	19	2.1	19	85	4	53	35	7	0	56	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145