Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  46  of  145  ( 17310 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16369511--16369556
22
2.1
22
83
0
56
56
13
10
19
1.66
16369576--16369730
82
1.9
82
89
1
240
42
15
17
24
1.88
16372222--16372322
50
2.0
50
96
0
184
30
20
12
35
1.91
16373560--16373610
21
2.5
21
83
3
68
41
21
9
27
1.84
16376331--16376378
25
1.9
25
100
0
96
33
25
6
35
1.81
16376356--16376450
42
2.2
44
90
3
149
38
16
4
40
1.68
16376430--16376465
15
2.4
15
100
0
72
41
11
0
47
1.39
16376655--16376710
16
3.5
16
90
7
87
35
10
0
53
1.36
16376776--16376803
11
2.5
11
100
0
56
71
0
0
28
0.86
16379376--16379512
17
7.4
17
66
19
69
32
3
14
49
1.61
16379362--16379426
22
3.2
22
70
20
77
30
6
15
47
1.70
16379429--16379522
17
5.1
19
65
23
65
34
3
14
47
1.61
16379351--16379521
37
4.6
37
88
6
220
32
4
14
49
1.62
16379519--16379617
9
10.6
9
85
8
135
22
8
31
38
1.83
16379519--16379619
29
3.6
29
87
5
161
21
7
30
39
1.82
16381396--16381513
40
3.0
40
77
7
134
31
22
24
21
1.98
16381651--16381971
41
7.8
41
82
4
333
17
23
25
33
1.96
16382809--16382845
15
2.4
16
82
13
51
72
0
0
27
0.84
16383705--16383752
24
2.0
24
91
0
78
18
18
33
29
1.95
16384219--16384250
16
2.0
16
100
0
64
75
6
0
18
1.01
16386614--16386658
19
2.3
19
85
11
56
44
0
2
53
1.13
16386720--16386789
12
6.1
12
73
21
51
52
12
0
34
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16386720--16386789
21
3.2
21
77
16
70
52
12
0
34
1.40
16386668--16386856
49
3.9
48
78
12
197
50
15
1
33
1.51
16386741--16386807
23
2.9
23
78
8
73
52
10
0
37
1.36
16386722--16386876
32
4.8
32
70
18
115
49
14
0
34
1.49
16386679--16386789
57
1.9
58
83
10
147
51
14
0
33
1.49
16386814--16386968
9
17.4
9
68
18
60
45
18
1
33
1.61
16386669--16386886
96
2.3
97
87
4
309
49
14
0
34
1.50
16386905--16386968
16
3.9
16
74
8
65
50
17
1
31
1.55
16387267--16387447
9
20.9
9
71
16
107
44
19
1
34
1.61
16387276--16387305
12
2.6
11
90
10
51
46
10
0
43
1.37
16387291--16387335
23
1.9
24
90
4
74
40
17
0
42
1.50
16387322--16387434
25
4.5
25
81
4
129
46
22
1
29
1.62
16387322--16387434
50
2.3
51
87
3
158
46
22
1
29
1.62
16393047--16393193
66
2.2
66
85
7
201
40
17
28
13
1.87
16393176--16393234
21
2.8
21
82
5
75
33
15
44
6
1.73
16393577--16394080
43
11.7
43
80
4
399
23
20
26
29
1.99
16393555--16393822
128
2.1
128
84
1
340
25
16
26
31
1.96
16397358--16397420
11
5.5
11
75
17
56
4
19
1
74
1.08
16397358--16397410
18
2.9
18
80
0
70
3
18
0
77
0.92
16402074--16402105
6
5.7
6
92
7
50
0
0
12
87
0.54
16403358--16403465
57
1.9
57
96
0
198
27
16
12
42
1.85
16403804--16404182
189
2.0
189
93
0
650
35
10
21
33
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16404440--16404549
43
2.6
41
77
12
107
22
20
22
33
1.97
16413726--16413826
50
2.0
50
84
3
132
24
22
11
40
1.88
16413776--16413919
69
2.1
69
88
5
211
24
22
14
38
1.92
16415971--16416015
23
2.0
23
81
0
54
62
15
0
22
1.33
16416255--16416302
25
1.9
25
95
0
87
27
14
14
43
1.84
16419125--16419407
51
5.6
51
94
1
480
28
23
14
33
1.94
16421568--16421601
12
2.8
12
95
0
59
55
2
0
41
1.15
16425396--16425797
203
2.0
202
90
1
635
34
20
13
32
1.91
16431544--16431611
16
4.2
16
96
0
127
26
0
35
38
1.57
16431827--16431879
16
3.4
15
79
7
52
52
1
0
45
1.11
16431734--16435227
155
22.5
155
99
0
6961
44
3
4
47
1.39
16431982--16432034
16
3.4
15
79
7
52
52
1
0
45
1.11
16432137--16432189
16
3.4
15
79
7
52
52
1
0
45
1.11
16432292--16432344
16
3.4
15
79
7
52
52
1
0
45
1.11
16432447--16432499
16
3.4
15
79
7
52
52
1
0
45
1.11
16432602--16432654
16
3.4
15
79
7
52
52
1
0
45
1.11
16432757--16432809
16
3.4
15
79
7
52
52
1
0
45
1.11
16432912--16432964
16
3.4
15
79
7
52
52
1
0
45
1.11
16433067--16433119
16
3.4
15
79
7
52
52
1
0
45
1.11
16433222--16433274
16
3.4
15
79
7
52
52
1
0
45
1.11
16433377--16433429
16
3.4
15
79
7
52
52
1
0
45
1.11
16433532--16433584
16
3.4
15
79
7
52
52
1
0
45
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16433687--16433739
16
3.4
15
79
7
52
52
1
0
45
1.11
16433842--16433894
16
3.4
15
79
7
52
52
1
0
45
1.11
16433997--16434049
16
3.4
15
79
7
52
52
1
0
45
1.11
16434152--16434204
16
3.4
15
79
7
52
52
1
0
45
1.11
16434307--16434359
16
3.4
15
79
7
52
52
1
0
45
1.11
16434462--16434514
16
3.4
15
79
7
52
52
1
0
45
1.11
16434617--16434669
16
3.4
15
79
7
52
52
1
0
45
1.11
16434772--16434824
16
3.4
15
79
7
52
52
1
0
45
1.11
16434927--16434979
16
3.4
15
79
7
52
52
1
0
45
1.11
16435082--16435134
16
3.4
15
79
7
52
52
1
0
45
1.11
16450657--16450709
12
3.9
13
76
23
56
47
1
13
37
1.54
16450684--16450714
12
2.6
12
89
0
53
48
6
12
32
1.67
16453508--16453537
16
1.9
16
93
6
53
73
0
0
26
0.84
16455746--16455781
18
2.0
18
94
0
63
69
5
2
22
1.22
16456305--16456369
23
2.7
25
77
15
66
43
1
1
53
1.19
16458468--16458513
22
2.1
21
84
4
56
41
4
4
50
1.42
16466164--16466234
36
2.0
36
91
0
115
26
11
14
47
1.77
16471244--16471314
36
2.0
36
85
0
97
25
11
14
49
1.76
16471255--16471315
17
3.5
17
76
8
59
27
9
13
49
1.73
16471759--16471796
5
7.6
5
93
0
67
78
0
2
18
0.86
16479024--16479171
70
2.1
68
82
4
172
35
15
5
43
1.70
16481119--16481167
20
2.6
19
80
6
55
34
4
16
44
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16483381--16483430
17
2.9
17
87
0
82
44
6
26
24
1.76
16502352--16502493
24
5.8
24
67
21
73
17
23
21
38
1.93
16502399--16502493
49
1.9
50
81
10
115
15
23
22
38
1.92
16504453--16504495
14
3.1
14
80
6
61
37
9
0
53
1.33
16504430--16504632
13
15.5
13
68
8
88
36
15
3
43
1.66
16504440--16504495
27
2.1
26
93
3
94
37
12
0
50
1.41
16504544--16504632
39
2.3
39
82
2
97
39
17
2
40
1.63
16504520--16504640
26
4.6
26
77
2
107
35
18
4
42
1.69
16504599--16504641
13
3.3
13
90
0
68
30
23
6
39
1.81
16507574--16507654
26
3.1
26
78
3
92
34
20
20
23
1.97
16507574--16507680
52
2.1
52
80
3
117
35
21
20
22
1.96
16511238--16511505
136
2.0
135
85
6
364
35
17
13
34
1.88
16511791--16511816
10
2.6
10
100
0
52
42
11
0
46
1.40
16516811--16516894
20
4.3
20
76
22
90
63
0
35
1
1.03
16516818--16516881
30
2.2
29
88
2
92
68
0
29
1
0.99
16516836--16516891
3
18.7
3
75
14
53
67
0
32
0
0.91
16516811--16516891
15
5.7
15
73
18
57
64
0
34
1
1.02
16517036--16517089
27
2.0
27
82
3
65
27
5
7
59
1.47
16517189--16517238
16
3.2
16
70
13
50
66
4
8
22
1.35
16517482--16517532
13
3.8
13
73
16
50
58
13
1
25
1.46
16517374--16517846
157
3.0
158
87
3
702
54
8
7
29
1.58
16520129--16520170
8
5.4
8
85
5
59
50
26
0
23
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16523038--16523124
40
2.1
43
85
10
119
51
12
4
31
1.60
16523066--16523206
76
1.9
76
86
3
203
52
13
4
29
1.59
16523440--16523480
13
3.3
13
76
13
50
2
34
0
63
1.08
16523427--16523491
24
2.7
23
71
4
58
3
26
0
70
1.01
16523449--16523496
21
2.3
20
85
3
60
2
29
0
68
1.01
16523507--16523670
3
54.7
3
100
0
328
32
33
0
33
1.58
16523674--16523946
6
45.5
6
85
1
314
0
39
0
59
1.00
16523674--16523946
9
30.3
9
86
1
314
0
39
0
59
1.00
16523674--16523946
15
18.2
15
85
1
314
0
39
0
59
1.00
16528019--16528049
9
3.4
9
90
0
53
25
12
22
38
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145