genome.fa.s13.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  3  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071954--1071994	16	2.6	16	78	17	50	53	2	2	41	1.27
1073526--1073568	16	2.8	16	76	16	54	65	0	0	34	0.93
1073538--1073564	8	3.4	8	100	0	54	62	0	0	37	0.95
1074697--1074730	16	2.1	16	89	10	52	52	17	2	26	1.58
1075301--1075333	1	33.0	1	100	0	66	100	0	0	0	0.00
1075300--1075363	6	11.2	6	88	6	53	84	0	15	0	0.63
1075471--1075519	22	2.2	21	79	10	53	44	10	8	36	1.68
1076430--1076497	21	3.3	19	78	15	64	61	5	0	32	1.20
1076460--1076501	15	2.7	16	75	20	52	61	0	0	38	0.96
1076614--1076673	9	7.2	9	75	17	51	61	3	0	35	1.12
1076443--1076787	172	2.0	173	99	0	683	47	6	6	39	1.56
1078940--1078990	15	3.3	15	74	20	52	60	0	1	37	1.08
1078946--1078989	8	5.9	7	80	15	52	63	0	2	34	1.07
1078940--1078992	8	6.9	8	81	16	51	60	0	1	37	1.08
1079104--1079145	8	5.4	8	86	8	52	59	0	2	38	1.10
1078945--1079256	153	2.0	153	97	1	592	38	14	12	33	1.84
1080237--1080284	25	2.0	24	83	4	60	72	10	0	16	1.10
1082796--1083765	75	13.0	75	81	5	938	29	25	18	25	1.98
1084786--1084816	9	3.4	9	90	0	53	25	12	22	38	1.90
1084872--1084908	9	4.1	9	92	0	65	45	13	10	29	1.77
1093418--1093454	9	4.1	9	89	0	56	48	13	8	29	1.71
1093552--1093576	5	5.0	5	100	0	50	0	80	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109088--1109163	27	2.8	25	73	19	64	48	3	2	44	1.35
1117751--1117785	6	5.8	6	89	0	52	5	17	31	45	1.71
1125914--1125969	27	2.1	27	86	6	78	62	3	0	33	1.12
1125946--1125991	22	2.1	21	88	11	67	71	4	0	23	1.03
1135462--1135529	4	17.0	4	100	0	136	50	25	0	25	1.50
1136830--1136855	7	3.7	7	100	0	52	84	0	0	15	0.62
1138829--1138857	10	2.7	11	94	5	51	0	0	17	82	0.66
1144175--1144208	12	2.9	12	86	4	52	32	0	0	67	0.91
1146286--1146352	31	2.3	27	83	14	89	40	13	10	35	1.79
1153408--1153601	100	1.9	100	81	0	235	39	14	15	30	1.87
1164684--1164715	2	16.0	2	100	0	64	50	0	0	50	1.00
1164765--1164793	2	14.5	2	100	0	58	48	0	0	51	1.00
1165847--1165903	30	1.9	30	86	13	82	68	1	1	28	1.09
1168793--1168833	21	2.0	21	100	0	82	46	14	19	19	1.84
1171022--1171076	29	1.9	29	92	3	94	56	12	3	27	1.53
1172637--1173401	228	3.4	229	87	1	1027	18	24	27	28	1.98
1188914--1188973	29	2.1	29	87	9	88	36	1	0	61	1.06
1188922--1188969	13	3.4	13	78	18	51	31	2	0	66	1.03
1191952--1191976	13	1.9	13	100	0	50	28	0	0	72	0.86
1197207--1197238	15	2.1	15	100	0	64	15	6	43	34	1.72
1201705--1201729	2	12.5	2	100	0	50	48	0	0	52	1.00
1202714--1202782	33	2.1	33	100	0	138	31	18	2	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203472--1203505	15	2.1	17	89	10	54	23	0	11	64	1.26
1205196--1205566	190	2.0	190	100	0	742	40	18	11	29	1.86
1207319--1207379	32	1.9	32	83	12	81	44	4	1	49	1.33
1209830--1209917	43	2.0	43	97	0	167	40	12	10	36	1.77
1211403--1211443	20	2.0	20	86	9	57	63	0	4	31	1.15
1211403--1211460	19	3.0	19	80	12	64	56	0	5	37	1.21
1224477--1224534	20	2.9	20	82	10	57	50	5	0	44	1.24
1228689--1228740	24	2.1	26	85	7	72	25	7	7	59	1.51
1233375--1233424	24	2.1	23	82	10	57	68	4	0	28	1.08
1233564--1233605	18	2.3	18	87	0	66	33	40	16	9	1.81
1233568--1233602	6	5.8	6	96	0	61	34	37	17	11	1.85
1236181--1236240	30	2.0	31	90	3	95	21	20	10	48	1.78
1236644--1236669	6	4.3	6	100	0	52	84	0	0	15	0.62
1236724--1236838	59	2.0	60	85	3	162	42	13	20	24	1.87
1254052--1254076	12	2.1	12	100	0	50	24	36	24	16	1.94
1254234--1254287	9	5.9	9	81	12	65	40	29	9	20	1.83
1254431--1254460	13	2.3	13	94	0	51	16	3	43	36	1.65
1261142--1261183	18	2.2	20	83	8	52	57	9	0	33	1.31
1261210--1261235	13	2.0	13	100	0	52	69	0	7	23	1.14
1268137--1268173	16	2.4	16	86	8	51	2	10	10	75	1.14
1268810--1268908	51	1.9	53	83	8	132	29	8	4	58	1.45
1272378--1272420	18	2.3	19	84	8	52	41	0	4	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272471--1272501	8	3.9	8	95	0	53	29	0	6	64	1.18
1272541--1272602	33	1.9	32	87	9	90	41	3	3	51	1.34
1272659--1272690	15	2.2	15	94	5	57	53	6	3	37	1.42
1273305--1273356	15	3.4	15	72	15	52	40	0	0	59	0.97
1273299--1273370	31	2.4	30	86	4	92	34	0	2	62	1.10
1277249--1277323	17	4.1	19	77	17	77	45	2	0	52	1.15
1277209--1277310	9	11.3	9	69	19	54	48	0	1	49	1.19
1277258--1277314	30	1.9	30	92	3	98	43	1	0	54	1.10
1277204--1277332	38	3.2	39	77	10	109	45	2	1	50	1.23
1280757--1280798	21	2.0	21	86	4	59	35	0	2	61	1.09
1280771--1280830	17	3.5	16	75	16	57	30	0	3	66	1.07
1286046--1286084	21	1.9	21	89	5	62	25	10	2	61	1.41
1287775--1287827	10	5.6	10	72	18	51	41	0	1	56	1.10
1287775--1287836	18	3.3	18	76	12	54	41	0	3	54	1.16
1287752--1287898	79	1.9	80	85	1	206	42	3	4	50	1.38
1287870--1287902	17	1.9	17	93	0	57	48	3	0	48	1.17
1291825--1292047	41	5.4	41	100	0	446	47	4	4	43	1.43
1295348--1295389	22	1.9	22	85	0	57	30	14	4	50	1.63
1299147--1299216	31	2.3	31	80	5	79	50	11	4	34	1.58
1309596--1309642	15	3.2	14	75	19	51	23	0	6	70	1.10
1312441--1312471	14	2.2	14	94	0	53	22	6	0	70	1.09
1323268--1323302	18	1.9	18	94	0	61	25	5	14	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323625--1323654	2	15.0	2	100	0	60	50	0	0	50	1.00
1326770--1326953	44	4.1	44	80	4	190	23	17	17	41	1.90
1326761--1326953	89	2.2	89	83	3	253	23	17	17	41	1.89
1326933--1326988	6	9.2	6	80	3	67	17	19	14	48	1.81
1330000--1330190	50	3.8	50	89	0	283	25	24	30	19	1.98
1332409--1332517	56	1.9	56	94	0	191	33	15	21	30	1.94
1333657--1333687	4	7.8	4	100	0	62	25	0	22	51	1.48
1337012--1337119	21	5.1	21	83	5	110	34	24	24	17	1.96
1340560--1340646	21	4.1	21	74	12	79	35	19	21	22	1.96
1340836--1340926	36	2.5	36	82	10	105	30	19	1	48	1.56
1340978--1341014	16	2.3	16	90	9	58	24	24	0	51	1.49
1341834--1341883	3	17.3	3	79	8	59	66	4	0	30	1.10
1341834--1341880	18	2.7	18	87	6	71	65	4	0	29	1.11
1342025--1342060	16	2.2	16	90	0	54	47	0	0	52	1.00
1343614--1343655	11	3.9	11	81	6	50	33	0	2	64	1.07
1354522--1354554	17	2.1	17	88	11	52	21	27	6	45	1.75
1358866--1358921	28	2.0	28	100	0	112	32	10	28	28	1.90
1367111--1367297	58	3.1	60	80	9	202	22	16	17	43	1.87
1381367--1381434	30	2.2	30	85	12	86	48	0	1	50	1.10
1383083--1383117	13	2.6	13	95	4	61	28	22	11	37	1.89
1394213--1394243	2	15.5	2	100	0	62	51	0	0	48	1.00
1399050--1399090	16	2.6	16	96	0	73	26	0	36	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1399336--1399370	18	2.0	17	88	5	52	54	0	0	45	0.99
1417516--1417589	34	2.3	32	84	11	89	35	8	14	41	1.76
1421597--1421637	18	2.2	19	86	4	57	65	7	24	2	1.30
1423932--1423958	2	13.5	2	100	0	54	51	0	0	48	1.00
1434964--1435008	21	2.1	22	83	4	56	48	17	11	22	1.78
1442314--1442344	7	4.4	7	100	0	62	12	0	25	61	1.32
1444297--1444424	64	2.0	64	81	0	148	25	19	18	36	1.94
1455733--1455760	11	2.5	11	100	0	56	57	0	10	32	1.33
1464380--1464480	43	2.4	43	89	1	150	25	18	23	31	1.98
1473752--1473807	26	2.2	26	90	0	85	26	5	28	39	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145