genome.fa.s13.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  31  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11349065--11349202	50	2.8	50	93	2	233	30	23	14	31	1.94
11350307--11350345	19	2.0	20	90	5	62	17	23	12	46	1.83
11353326--11353382	3	19.0	3	100	0	114	66	0	0	33	0.92
11354738--11354888	50	3.0	50	79	0	185	19	23	27	29	1.98
11354980--11355287	131	2.3	131	91	2	494	24	24	21	30	1.99
11355079--11355614	132	4.1	132	86	4	631	26	23	19	30	1.98
11355355--11355534	44	4.1	44	66	11	107	30	22	16	31	1.95
11355918--11356045	42	2.9	45	68	18	106	24	23	22	29	1.99
11355872--11356045	87	2.0	87	87	3	251	24	24	24	27	2.00
11358141--11358248	6	17.8	6	77	5	67	9	8	5	76	1.14
11359008--11359054	22	2.1	22	96	0	85	48	6	27	17	1.71
11360303--11360334	14	2.4	13	90	10	55	0	15	12	71	1.14
11360728--11361077	44	8.1	43	69	13	173	27	21	21	30	1.98
11360742--11361079	85	3.9	84	73	11	265	27	21	21	28	1.99
11361156--11361665	50	10.2	50	79	6	379	23	18	23	34	1.96
11361093--11361487	100	4.0	100	89	1	560	21	20	25	33	1.97
11361156--11361665	100	5.1	100	89	2	483	23	18	23	34	1.96
11361098--11361665	200	2.8	200	82	2	543	22	19	23	34	1.97
11362198--11363694	50	30.0	50	84	4	1792	26	18	21	33	1.96
11363711--11363845	45	3.0	45	75	6	148	23	25	21	29	1.99
11364724--11364770	22	2.1	22	100	0	94	59	8	19	12	1.58
11364926--11364973	21	2.2	22	85	3	62	25	37	10	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11365065--11365103	9	4.6	9	87	12	64	10	10	0	79	0.94
11365058--11365101	16	2.8	16	96	0	79	13	9	0	77	0.99
11365885--11365918	7	4.9	7	86	13	52	2	11	0	85	0.71
11365885--11365925	21	2.0	21	90	0	64	4	12	0	82	0.81
11365898--11365979	38	2.2	38	86	6	114	10	7	6	75	1.18
11370291--11370332	14	2.8	15	78	10	50	69	9	2	19	1.28
11371350--11371392	3	14.3	3	100	0	86	67	32	0	0	0.91
11371391--11371438	3	16.0	3	100	0	96	66	0	0	33	0.92
11371659--11371690	14	2.4	13	90	10	55	0	15	12	71	1.14
11371980--11372027	22	2.1	22	88	3	69	52	2	0	45	1.12
11371980--11372035	23	2.5	23	82	8	71	51	1	0	46	1.11
11374746--11374790	20	2.2	21	84	4	56	53	6	2	37	1.40
11376711--11376740	12	2.4	13	88	11	53	23	10	0	66	1.21
11377304--11377333	15	2.0	15	93	0	51	83	0	13	3	0.77
11380410--11380450	6	6.5	6	89	10	64	51	14	0	34	1.43
11380410--11380451	20	2.1	20	100	0	84	50	14	0	35	1.43
11380414--11380444	14	2.2	14	100	0	62	51	12	0	35	1.40
11386430--11386465	15	2.5	15	95	4	65	25	13	25	36	1.93
11386489--11386594	44	2.5	41	77	18	126	35	31	3	29	1.75
11386506--11386594	44	2.0	46	93	4	155	37	31	4	26	1.77
11386576--11386628	16	3.3	16	94	0	97	22	33	5	37	1.78
11387036--11387172	41	3.5	39	75	15	129	24	17	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11390022--11390074	16	3.2	16	94	5	97	24	0	37	37	1.56
11401544--11401606	10	5.8	10	74	17	54	71	6	17	4	1.25
11402025--11402186	85	1.9	84	87	1	234	39	1	17	41	1.57
11402537--11402671	40	3.4	39	74	7	121	24	17	25	33	1.96
11406830--11406867	13	2.8	13	92	4	58	0	26	0	73	0.83
11406896--11407120	112	2.0	113	99	0	443	33	16	2	46	1.61
11407630--11407723	37	2.6	36	81	5	107	42	28	9	19	1.82
11409316--11409377	20	3.0	21	83	11	74	38	32	0	29	1.57
11409403--11409433	15	2.1	15	93	0	53	41	38	0	19	1.51
11410578--11410884	43	7.1	43	87	0	319	26	16	26	30	1.97
11410464--11410668	107	1.9	105	89	3	313	24	14	27	33	1.94
11410610--11410884	86	3.2	86	83	0	361	26	17	26	29	1.97
11413834--11414030	50	4.0	50	85	2	236	26	22	29	20	1.99
11414279--11414317	12	3.2	12	85	0	51	51	5	23	20	1.67
11419574--11419614	20	2.0	20	90	0	64	31	2	4	60	1.30
11419649--11419689	21	2.0	21	85	0	55	34	0	2	63	1.08
11420078--11420265	92	2.0	93	98	1	369	47	6	6	39	1.55
11422354--11422381	2	14.0	2	100	0	56	50	0	50	0	1.00
11423155--11423343	80	2.4	78	80	8	222	45	9	17	26	1.80
11425012--11425048	15	2.5	15	95	0	65	18	8	8	64	1.45
11434191--11434224	18	1.9	17	94	5	59	47	14	11	26	1.79
11438267--11438303	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11438722--11438990	91	3.0	90	83	7	327	37	20	10	32	1.86
11439004--11439041	20	1.9	20	88	0	58	28	13	18	39	1.88
11441216--11441497	140	2.0	141	99	0	557	42	8	18	30	1.80
11442368--11442566	56	3.7	56	85	8	302	26	21	28	23	1.99
11442368--11442619	56	4.7	54	82	9	286	27	20	28	23	1.99
11442368--11442619	106	2.4	106	89	1	380	27	20	28	23	1.99
11442535--11442661	50	2.6	49	81	6	150	31	18	23	25	1.98
11445219--11445281	30	2.1	30	96	0	117	23	3	15	57	1.53
11452551--11452588	14	2.7	14	95	0	67	0	18	5	76	0.97
11453471--11453545	26	2.9	26	91	0	123	17	24	21	37	1.94
11453657--11453717	28	2.2	28	85	2	79	22	19	24	32	1.97
11458448--11458474	9	3.0	9	100	0	54	11	11	44	33	1.75
11459261--11459432	27	6.4	27	80	9	165	39	19	19	21	1.93
11459254--11459432	54	3.3	53	79	7	191	40	18	18	21	1.91
11459261--11459451	81	2.3	80	80	8	199	39	18	19	21	1.92
11459599--11459700	26	3.9	26	83	2	107	17	22	22	37	1.94
11459599--11459700	52	2.0	52	82	3	125	17	22	22	37	1.94
11459805--11459894	28	2.8	32	72	17	89	23	23	23	30	1.99
11461825--11461886	26	2.4	26	89	5	90	35	25	19	19	1.95
11461874--11461968	28	3.5	27	72	21	81	40	17	18	23	1.92
11461848--11461969	54	2.3	54	89	2	183	38	20	18	22	1.93
11473672--11473796	38	3.3	39	93	3	209	30	9	10	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11492820--11492877	24	2.4	24	82	5	82	29	27	24	18	1.98
11502776--11502810	11	3.0	12	91	4	54	0	25	0	74	0.82
11505948--11506033	20	4.4	19	78	8	77	41	22	25	10	1.85
11506489--11506534	16	3.1	15	84	6	58	45	8	0	45	1.34
11512220--11513229	424	2.4	424	95	1	1776	35	19	11	33	1.88
11518780--11518894	48	2.4	48	94	1	205	13	22	1	61	1.41
11521920--11521956	18	2.1	18	89	0	56	48	10	10	29	1.72
11522005--11522067	30	2.1	31	85	8	85	17	47	1	33	1.57
11522630--11522667	19	2.0	19	89	0	58	34	7	23	34	1.84
11524372--11524411	21	2.0	21	85	5	55	55	5	17	22	1.61
11527880--11527994	27	4.3	27	80	4	115	22	24	15	37	1.93
11531347--11531404	19	3.3	19	65	30	56	48	24	1	25	1.61
11531347--11531413	33	2.0	33	100	0	134	49	23	2	23	1.64
11531348--11531431	33	2.7	31	85	8	93	46	22	2	28	1.64
11543310--11543430	43	2.8	43	89	0	170	28	23	19	28	1.98
11562896--11562931	14	2.6	14	91	8	56	0	19	0	80	0.71
11565549--11565582	18	1.9	17	88	5	50	55	2	0	41	1.15
11570038--11570100	23	2.7	24	79	16	87	52	22	7	17	1.70
11570067--11570112	22	2.1	22	84	8	58	58	19	4	17	1.55
11570130--11570208	23	3.2	23	65	16	59	43	18	12	25	1.86
11570158--11570739	290	2.0	291	97	0	1112	51	15	11	20	1.75
11576834--11576927	46	2.0	46	95	0	170	23	19	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11577258--11577293	14	2.6	14	95	0	63	66	5	8	19	1.38
11581233--11581325	46	2.0	46	89	0	141	25	18	19	36	1.94
11585938--11585994	30	1.9	30	88	0	87	22	12	26	38	1.89
11592768--11592824	30	1.9	30	92	0	96	19	12	26	42	1.86
11595857--11596139	141	2.0	142	99	0	559	39	14	4	41	1.66
11595892--11596190	141	2.1	141	88	2	413	40	16	4	38	1.69
11602670--11602709	20	2.0	21	90	5	64	60	5	0	35	1.19
11607784--11607828	17	2.7	16	80	10	54	33	2	2	62	1.20
11608229--11608297	29	2.3	31	90	5	106	26	10	18	44	1.81
11608247--11608304	29	2.0	29	86	0	80	31	13	17	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145