genome.fa.s13.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  115  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38293036--38293160	41	3.0	41	92	0	205	21	20	32	25	1.97
38295076--38295115	17	2.4	17	95	0	71	47	15	22	15	1.82
38296052--38299594	114	31.1	114	99	0	7007	29	6	21	42	1.77
38300211--38300653	43	10.3	43	88	1	602	19	18	33	28	1.96
38303173--38303242	19	3.5	20	71	21	56	41	2	1	54	1.24
38303226--38303303	9	8.3	9	79	12	77	29	5	2	62	1.30
38304360--38304386	2	13.5	2	100	0	54	48	0	0	51	1.00
38305483--38305520	17	2.2	17	86	9	51	42	0	0	57	0.98
38305778--38305812	12	2.9	12	86	0	52	51	8	2	37	1.47
38310459--38310594	66	2.1	66	94	0	236	27	27	14	30	1.95
38311933--38311984	25	2.1	25	96	0	95	25	5	21	48	1.72
38313930--38314304	93	4.0	93	85	3	470	26	25	16	31	1.96
38317606--38317660	21	2.7	20	88	8	83	23	9	34	32	1.86
38317886--38317937	22	2.3	22	77	9	52	50	5	1	42	1.37
38326537--38327530	497	2.0	497	100	0	1988	33	14	19	32	1.92
38328525--38328580	29	1.9	29	85	0	76	30	12	19	37	1.89
38328621--38328915	147	2.0	148	99	0	583	40	7	3	49	1.48
38329015--38329066	25	2.0	26	88	3	79	38	0	11	50	1.39
38331698--38331762	10	6.6	10	74	10	53	24	6	1	67	1.22
38334511--38334544	17	2.0	17	88	0	50	20	11	20	47	1.81
38335852--38335894	19	2.5	17	81	11	52	48	4	2	44	1.36
38345490--38345552	30	2.1	29	94	2	108	41	26	19	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38348702--38348800	48	2.0	49	98	1	191	51	8	9	31	1.63
38348907--38348949	3	14.0	3	90	4	68	65	0	2	32	1.06
38350817--38350842	2	13.0	2	100	0	52	50	0	0	50	1.00
38354493--38354572	35	2.3	35	80	4	101	31	5	1	62	1.24
38354613--38354656	22	2.0	22	86	4	63	40	0	2	56	1.11
38354605--38354695	29	3.1	28	83	10	94	37	3	1	58	1.22
38354605--38354745	19	7.4	19	69	17	71	36	4	0	58	1.23
38354605--38354745	10	13.8	10	72	15	74	36	4	0	58	1.23
38361817--38362015	66	3.0	66	95	0	353	27	30	15	27	1.96
38364418--38364476	30	2.0	30	96	0	109	38	28	18	13	1.89
38366917--38366953	2	18.5	2	100	0	74	51	0	0	48	1.00
38371773--38372147	93	4.0	93	87	2	495	26	25	15	32	1.95
38388560--38388591	15	2.1	16	88	11	50	46	0	0	53	1.00
38393402--38393471	22	3.2	22	100	0	140	51	4	22	21	1.65
38395466--38395502	2	18.5	2	100	0	74	51	0	0	48	1.00
38406286--38406314	2	14.5	2	100	0	58	51	0	0	48	1.00
38406106--38406462	196	1.8	196	91	0	597	36	17	15	30	1.91
38407403--38407749	173	2.0	173	100	0	694	39	18	19	23	1.92
38412981--38413075	46	2.1	46	93	0	163	31	4	11	52	1.57
38413550--38413597	22	2.2	22	92	0	78	12	16	12	58	1.63
38414200--38414261	30	2.0	31	96	3	117	40	20	16	22	1.91
38422185--38422245	3	20.7	3	93	3	106	67	1	0	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38431881--38431925	21	2.1	23	88	12	69	46	0	4	48	1.22
38432066--38432113	22	2.1	23	88	3	71	43	0	33	22	1.54
38433247--38433302	25	2.2	25	77	3	58	35	12	5	46	1.65
38434825--38434855	1	31.0	1	100	0	62	100	0	0	0	0.00
38440805--38440862	25	2.3	26	78	3	64	67	5	5	22	1.31
38444758--38444790	17	1.9	18	88	11	52	45	0	12	42	1.41
38446100--38446155	29	1.9	29	85	7	78	42	19	14	23	1.88
38447556--38447605	20	2.5	20	87	9	66	28	2	4	66	1.21
38449663--38449714	24	2.2	24	92	0	86	34	1	7	55	1.39
38450744--38450793	27	1.9	27	84	8	68	60	10	14	16	1.59
38451192--38451222	10	3.1	10	95	0	53	48	0	9	41	1.36
38451256--38451321	33	2.0	33	85	11	91	48	3	9	39	1.50
38451302--38451342	18	2.3	18	87	4	66	51	0	7	41	1.30
38451420--38451471	26	2.0	27	88	3	79	61	1	7	28	1.34
38452120--38452160	2	20.5	2	100	0	82	0	0	48	51	1.00
38452531--38452557	13	2.1	13	100	0	54	7	14	37	40	1.74
38463513--38463538	1	26.0	1	100	0	52	0	0	0	100	0.00
38463371--38463572	100	2.0	102	93	3	347	20	16	12	49	1.79
38463618--38463654	12	2.9	13	88	8	58	0	16	0	83	0.64
38465569--38465606	15	2.5	16	83	12	53	68	10	0	21	1.19
38466320--38466360	20	2.0	20	90	9	66	63	17	4	14	1.47
38466922--38467091	52	3.3	52	99	0	331	43	7	1	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38466963--38467045	24	3.3	24	66	33	66	43	8	1	46	1.41
38469595--38469635	22	1.9	21	85	14	57	26	21	21	29	1.99
38469915--38469991	27	2.9	27	90	3	120	16	24	38	19	1.92
38475257--38475300	4	10.5	4	80	9	52	29	0	0	70	0.88
38475258--38475345	13	7.5	13	67	26	54	35	1	0	63	1.02
38475275--38475308	16	2.1	17	88	5	52	32	0	0	67	0.91
38475259--38475344	17	5.1	16	71	18	50	36	1	0	62	1.03
38478499--38478532	16	2.1	16	88	5	50	35	0	11	52	1.38
38483733--38483785	22	2.5	20	74	20	54	64	1	0	33	1.05
38485950--38486002	22	2.5	20	74	20	54	64	1	0	33	1.05
38486830--38487727	456	2.0	455	99	0	1760	27	13	18	40	1.88
38490788--38490941	77	1.9	80	87	7	224	48	1	2	47	1.27
38498593--38498652	32	1.9	31	82	3	75	63	3	3	30	1.27
38507742--38507844	50	2.1	50	92	0	170	26	24	11	37	1.89
38510538--38510566	13	2.1	14	93	6	51	27	0	3	68	1.05
38510830--38512728	948	2.0	948	100	0	3798	40	13	18	27	1.87
38520669--38520717	13	3.7	13	80	2	53	24	4	0	71	1.03
38520651--38520717	27	2.6	27	79	15	70	25	4	2	67	1.24
38520648--38520717	37	1.9	36	82	8	88	24	4	2	68	1.21
38520759--38521218	94	4.9	94	99	0	893	31	9	6	52	1.60
38522822--38522893	29	2.4	29	86	4	90	51	11	9	27	1.69
38535413--38535488	37	2.1	37	82	9	93	48	1	1	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38536573--38536610	4	9.5	4	83	11	51	73	0	5	21	1.02
38536643--38536777	51	2.6	51	80	10	141	52	1	8	37	1.40
38536731--38536765	12	2.9	12	91	0	61	45	0	11	42	1.40
38536885--38536977	35	2.7	34	75	8	91	47	2	9	40	1.48
38537785--38537818	10	3.3	10	88	8	50	88	5	2	2	0.70
38538281--38538318	16	2.4	16	95	0	67	26	34	2	36	1.71
38544382--38544500	59	2.0	60	96	1	222	38	0	5	56	1.21
38544463--38544514	16	3.5	15	80	16	56	32	0	3	63	1.12
38544385--38544518	59	2.4	57	90	7	202	38	0	4	57	1.19
38544501--38544551	25	2.0	24	88	7	75	39	0	1	58	1.09
38549602--38549638	20	1.9	18	89	10	56	37	10	10	40	1.75
38558415--38558444	2	15.0	2	100	0	60	50	0	50	0	1.00
38565094--38565178	43	2.0	43	90	0	134	34	14	23	28	1.93
38577773--38577807	13	2.8	12	91	8	52	40	0	0	60	0.97
38578812--38578870	22	2.7	22	69	10	57	40	13	1	44	1.54
38583913--38583983	20	3.2	20	73	21	70	63	7	4	25	1.38
38584877--38584901	12	2.1	12	100	0	50	24	8	0	68	1.16
38585799--38585845	18	2.5	20	80	16	57	21	8	6	63	1.44
38585908--38585952	21	2.2	20	84	11	56	28	11	2	57	1.45
38585980--38586310	107	3.1	107	86	2	443	30	16	18	34	1.93
38589794--38590050	33	7.8	33	76	1	210	29	3	42	23	1.72
38589804--38590049	99	2.5	98	75	6	237	30	3	42	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38589773--38590056	66	4.3	66	77	5	234	29	3	42	23	1.71
38594986--38595028	22	2.0	22	90	0	68	9	13	27	48	1.73
38595122--38595284	42	3.9	42	85	2	238	31	22	19	26	1.98
38595100--38595284	84	2.2	85	87	3	257	31	21	19	27	1.97
38595464--38595501	18	2.1	18	100	0	76	31	28	5	34	1.80
38613171--38613399	42	5.4	42	84	6	259	30	20	23	25	1.99
38613171--38613399	85	2.7	86	84	8	263	30	20	23	25	1.99
38613367--38613591	112	2.0	113	97	2	427	27	17	17	38	1.92
38613689--38613725	19	1.9	19	89	10	58	59	2	5	32	1.34
38613972--38614040	21	3.3	21	81	0	75	2	42	17	37	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145