genome.fa.s13.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  92  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31584316--31584364	14	3.4	14	81	13	55	6	8	4	81	0.97
31584314--31584356	13	3.2	13	83	6	50	4	6	4	83	0.89
31584318--31584365	21	2.4	19	82	10	51	6	8	4	81	0.98
31589807--31589866	18	3.3	18	90	0	93	25	11	31	31	1.91
31589807--31589875	18	3.8	17	81	7	57	26	11	31	30	1.91
31592768--31592820	28	1.9	28	84	3	72	43	3	1	50	1.30
31592737--31592919	91	2.0	92	98	1	359	39	8	4	48	1.53
31592859--31592911	28	1.9	28	84	3	72	43	3	1	50	1.30
31598182--31598243	28	2.2	28	82	2	79	33	0	1	64	1.03
31599880--31599941	28	2.2	28	82	2	79	33	0	1	64	1.03
31607999--31608036	20	1.9	20	84	10	51	7	10	23	57	1.58
31607987--31608088	42	2.8	33	72	24	98	14	10	25	49	1.76
31608579--31608660	38	2.1	40	95	4	150	25	35	10	28	1.90
31609062--31609259	98	2.0	99	96	2	364	19	26	11	42	1.84
31618849--31618907	9	6.7	9	81	9	59	52	1	0	45	1.10
31618849--31618907	13	4.5	13	78	4	64	52	1	0	45	1.10
31618855--31618908	9	6.0	9	84	0	63	51	1	0	46	1.11
31618880--31618930	17	2.9	17	82	2	57	41	7	0	50	1.31
31623073--31625153	265	7.9	264	83	2	2384	37	16	16	29	1.91
31623073--31625139	526	3.9	527	83	3	2407	37	16	16	29	1.91
31628074--31628175	50	2.1	49	87	5	143	60	9	11	17	1.57
31628973--31629119	40	3.7	39	75	7	125	36	23	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31629102--31629444	113	3.0	113	88	1	517	27	23	22	27	1.99
31629561--31629649	41	2.2	41	81	4	99	16	24	32	25	1.96
31641251--31641290	21	1.9	21	89	0	62	35	15	45	5	1.68
31641173--31641371	87	2.3	87	81	6	208	38	17	31	12	1.87
31641338--31641396	21	2.8	21	86	0	82	30	16	45	6	1.74
31641599--31641628	14	2.1	14	93	0	51	10	0	36	53	1.35
31641694--31642166	43	11.0	43	88	3	630	22	22	25	29	1.99
31643745--31643883	17	8.1	17	67	19	58	45	4	1	48	1.31
31643752--31643849	12	8.1	12	68	24	55	43	4	1	51	1.27
31648492--31648637	63	2.3	63	86	0	202	18	19	30	31	1.96
31648585--31648687	50	2.1	50	85	3	136	19	22	27	31	1.98
31651642--31651689	21	2.3	21	88	0	69	52	8	2	37	1.44
31653316--31653487	89	1.9	89	89	0	263	30	12	17	39	1.86
31659895--31660177	69	4.1	69	78	0	244	34	23	21	20	1.97
31659899--31660152	138	1.8	138	81	0	319	34	23	21	20	1.97
31660067--31660218	69	2.2	69	82	2	180	36	26	17	19	1.94
31663764--31663860	29	3.2	29	90	8	149	50	14	4	30	1.61
31667750--31667780	12	2.6	12	100	0	62	45	0	25	29	1.54
31675056--31675090	18	2.0	17	88	5	52	45	0	0	54	0.99
31675255--31675345	45	2.0	45	85	2	121	37	28	6	27	1.82
31675326--31675361	16	2.2	16	100	0	72	38	36	0	25	1.56
31687913--31687944	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31688940--31688990	15	3.4	15	72	20	52	49	1	1	47	1.24
31699294--31699424	28	4.7	28	86	0	181	33	10	24	31	1.89
31699293--31699429	56	2.4	56	90	0	211	34	10	23	31	1.89
31699352--31699433	28	3.1	24	71	25	67	34	12	23	30	1.91
31705161--31705287	39	3.3	39	83	2	103	43	12	11	32	1.79
31705193--31705288	39	2.5	39	89	0	147	42	11	12	33	1.79
31708423--31708462	21	1.9	21	84	0	53	5	17	0	77	0.94
31711759--31711875	39	3.0	39	87	0	153	42	11	10	35	1.76
31714978--31715015	17	2.2	17	90	0	58	47	10	5	36	1.61
31716525--31716549	5	5.0	5	100	0	50	80	0	0	20	0.72
31718793--31718829	18	2.1	18	100	0	74	45	5	16	32	1.70
31719365--31719410	24	2.0	24	82	4	58	19	2	30	47	1.61
31722109--31722141	15	2.2	15	100	0	66	12	6	30	51	1.63
31726521--31726563	20	2.2	20	95	0	77	30	13	2	53	1.53
31733822--31733851	15	1.9	16	93	6	53	60	3	10	26	1.45
31747621--31747645	13	1.9	13	100	0	50	48	0	4	48	1.20
31747614--31747652	11	3.4	11	83	13	51	41	0	2	56	1.13
31752106--31752161	27	2.0	28	82	10	69	58	1	1	37	1.19
31754953--31755042	9	9.3	10	68	21	50	31	3	3	62	1.28
31754980--31755042	20	3.2	20	76	17	60	30	1	4	63	1.24
31756794--31756830	5	7.6	5	93	6	67	37	0	0	62	0.96
31763741--31763780	11	3.6	11	93	6	64	22	35	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31763820--31763850	11	2.8	11	100	0	62	35	0	0	64	0.94
31765451--31765490	18	2.2	18	95	0	71	22	30	7	40	1.81
31765918--31765965	25	1.9	25	95	0	87	43	0	16	39	1.48
31766011--31766713	23	31.7	22	72	18	439	47	24	0	26	1.57
31766008--31766600	90	6.4	90	79	12	625	48	24	0	26	1.56
31766011--31766715	113	6.4	112	74	15	483	47	24	0	26	1.57
31766101--31766715	45	14.1	40	72	20	163	47	24	0	26	1.57
31766399--31766435	17	2.2	17	95	4	67	59	21	0	18	1.38
31766397--31766441	16	2.9	16	87	12	67	53	22	0	24	1.46
31766053--31766713	181	3.6	190	74	16	219	47	25	0	26	1.57
31766004--31766600	45	13.0	45	79	12	546	47	25	0	26	1.56
31769689--31770185	123	4.0	123	92	1	832	32	22	16	29	1.95
31769689--31770183	248	2.0	248	93	0	855	32	22	16	29	1.95
31774159--31774200	21	2.0	21	81	9	50	52	7	9	30	1.61
31774397--31774438	23	1.9	21	90	9	66	23	9	14	52	1.71
31774991--31775224	117	2.0	117	99	0	459	58	14	10	16	1.63
31783532--31783626	46	2.1	46	95	0	172	32	2	23	42	1.66
31783537--31783613	22	3.4	22	67	13	66	35	2	25	36	1.70
31784396--31784770	187	2.0	187	93	0	642	34	14	14	36	1.87
31792536--31792631	47	2.0	48	97	2	185	42	14	11	31	1.81
31794841--31794887	16	2.9	16	100	0	94	57	10	6	25	1.56
31796447--31796488	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31796438--31796479	15	2.9	15	82	10	52	47	0	0	52	1.00
31802725--31802760	18	2.0	18	88	0	54	58	13	5	22	1.56
31804664--31804702	16	2.5	16	87	4	62	61	5	0	33	1.18
31804652--31804700	15	3.2	16	80	11	59	69	4	0	26	1.06
31805175--31805523	123	2.8	124	94	0	601	28	15	23	32	1.95
31807134--31807184	10	5.1	10	76	9	50	70	0	0	29	0.87
31807134--31807197	30	2.1	31	94	2	112	67	0	0	32	0.91
31813859--31813895	2	18.5	2	94	0	65	48	0	0	51	1.00
31815137--31815179	20	2.2	20	86	0	59	27	6	20	44	1.77
31817620--31817657	1	38.0	1	94	0	67	97	0	2	0	0.18
31825172--31825241	33	2.1	33	91	0	113	42	20	10	27	1.83
31827589--31827699	46	2.7	38	76	20	123	51	1	20	26	1.57
31827611--31827717	46	2.4	43	86	8	160	41	2	25	30	1.70
31829753--31829846	47	2.0	47	87	4	136	12	21	19	46	1.82
31845049--31845084	18	2.0	18	100	0	72	38	22	0	38	1.54
31848807--31848843	9	4.1	9	92	0	65	29	10	13	45	1.77
31853909--31853937	15	1.9	15	100	0	58	48	13	6	31	1.69
31861265--31861300	17	2.1	17	100	0	72	25	22	19	33	1.97
31867587--31867836	27	9.3	27	83	1	304	35	19	20	25	1.96
31867847--31867929	24	3.5	23	80	4	85	22	6	24	46	1.74
31867847--31867913	23	2.9	23	84	2	80	20	5	25	47	1.73
31868099--31868205	32	3.4	31	84	1	133	21	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31873255--31873447	50	3.9	50	89	2	271	26	22	29	21	1.99
31873258--31873511	50	5.1	50	81	6	221	26	22	28	22	1.99
31873258--31873505	100	2.5	100	82	4	279	27	22	28	21	1.99
31881157--31881405	50	4.9	50	75	7	184	24	26	20	28	1.99
31889175--31889407	128	1.8	128	98	0	448	34	16	9	39	1.80
31889791--31889839	21	2.4	20	83	6	62	26	2	0	71	0.97
31892456--31892506	23	2.2	24	82	3	59	35	1	3	58	1.28
31898261--31898376	33	3.6	32	75	12	112	53	6	2	37	1.39
31902738--31902814	33	2.3	32	82	6	91	27	24	15	32	1.95
31904334--31904359	7	3.7	7	100	0	52	73	0	0	26	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145