genome.fa.s13.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  89  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30458538--30458654	41	2.9	41	89	2	182	20	22	29	28	1.98
30461985--30462328	23	15.0	23	75	10	258	31	5	21	40	1.77
30461996--30462206	91	2.3	91	78	8	214	30	6	22	40	1.78
30462001--30462321	114	2.8	115	80	7	316	32	5	21	40	1.77
30461988--30462328	137	2.5	137	90	1	524	32	5	21	40	1.77
30463197--30463489	43	6.8	43	81	2	302	23	17	26	32	1.97
30463197--30463489	129	2.3	129	81	2	356	23	17	26	32	1.97
30463417--30463509	43	2.1	44	82	2	107	23	23	24	27	2.00
30481006--30481038	15	2.2	15	100	0	66	39	15	12	33	1.84
30492523--30492588	33	2.0	33	87	0	96	33	9	24	33	1.87
30503649--30503714	27	2.6	25	82	4	78	25	24	22	27	2.00
30503649--30503717	25	2.6	27	84	4	88	26	24	21	27	1.99
30506053--30506111	11	5.2	11	75	20	50	42	0	35	22	1.54
30506219--30506249	15	2.0	16	93	6	55	9	6	12	70	1.31
30525791--30525845	19	2.8	18	78	13	56	21	3	1	72	1.09
30527826--30527861	16	2.2	17	90	5	56	36	0	52	11	1.37
30531883--30531939	19	3.0	20	80	14	59	57	8	1	31	1.39
30546168--30546352	101	1.8	102	84	3	257	25	20	26	28	1.99
30546356--30546454	46	2.2	43	81	12	110	24	19	24	32	1.97
30546576--30546607	16	2.0	16	93	0	55	59	0	15	25	1.36
30555970--30555999	10	3.0	10	100	0	60	70	10	0	20	1.16
30559611--30559666	20	2.8	20	84	10	78	23	28	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30562105--30562253	43	3.5	43	85	7	180	37	26	14	21	1.91
30562619--30562676	30	1.9	30	85	0	80	25	27	5	41	1.76
30569266--30569372	48	2.2	47	74	21	105	10	23	5	60	1.50
30569889--30569944	27	2.1	27	86	0	76	8	30	16	44	1.78
30571542--30571581	13	2.9	14	92	7	73	15	12	5	67	1.38
30589901--30590205	107	2.9	107	88	0	466	31	19	18	30	1.96
30592284--30593480	50	24.2	50	65	6	324	26	21	21	29	1.99
30592278--30593154	100	8.9	100	80	6	941	26	22	22	29	1.99
30592278--30593195	199	4.7	199	86	4	1157	26	21	22	29	1.99
30592412--30593193	389	2.0	390	91	0	1271	26	21	22	29	1.99
30592802--30593195	100	4.0	100	80	6	442	27	22	21	29	1.99
30593021--30593345	150	2.2	150	89	1	490	27	22	20	30	1.98
30592834--30593493	349	1.9	349	91	0	1097	27	21	21	29	1.98
30593171--30593522	100	3.5	100	78	5	397	27	21	20	30	1.98
30593600--30594227	44	14.3	43	69	12	283	30	26	16	26	1.96
30593561--30594232	132	5.1	132	93	0	1085	30	26	15	27	1.96
30593572--30594232	88	7.5	90	73	7	442	30	26	15	27	1.96
30595182--30595244	6	10.2	6	77	16	58	3	12	1	82	0.86
30595183--30595244	12	5.5	11	79	9	72	3	11	1	83	0.82
30595183--30595244	19	3.3	18	80	12	72	3	11	1	83	0.82
30595652--30595687	14	2.6	14	90	0	54	0	11	11	77	0.99
30595664--30595731	14	5.0	13	74	13	57	4	2	10	82	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30597034--30597269	62	3.8	62	97	0	427	34	4	20	40	1.72
30598802--30599107	107	2.9	107	90	0	488	33	19	17	30	1.95
30599810--30599840	15	2.1	15	93	0	53	58	0	9	32	1.31
30604966--30604997	16	2.0	16	100	0	64	31	12	31	25	1.92
30623479--30623615	50	2.6	52	81	9	161	21	32	20	24	1.97
30626988--30627036	20	2.5	20	81	15	66	12	24	6	57	1.58
30627288--30627393	50	2.1	50	83	0	140	23	24	21	30	1.99
30627301--30627418	50	2.4	50	81	2	130	21	26	22	29	1.99
30649375--30649418	15	2.9	15	82	3	52	56	4	29	9	1.50
30661048--30661174	58	2.2	59	92	4	213	48	10	12	28	1.73
30661958--30661998	21	2.0	21	85	0	55	36	12	9	41	1.76
30662006--30662045	21	1.9	21	89	0	62	30	12	0	57	1.36
30662619--30662643	11	2.3	11	100	0	50	64	8	0	28	1.22
30666151--30666224	37	2.0	37	97	0	139	36	13	25	24	1.92
30669967--30670012	8	5.8	8	92	0	56	0	60	0	39	0.97
30669967--30670008	12	3.5	12	86	0	57	0	61	0	38	0.96
30672214--30672263	19	2.6	19	77	3	55	18	12	2	68	1.30
30672368--30672434	20	3.2	20	78	4	62	16	10	8	64	1.49
30672505--30672557	19	2.7	19	82	2	52	22	15	1	60	1.44
30672522--30672560	20	2.0	19	90	5	60	28	12	0	58	1.34
30676993--30677059	27	2.5	27	85	0	80	32	17	34	14	1.91
30678880--30678976	28	3.2	33	61	27	77	30	10	11	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30681991--30682265	28	9.8	28	82	5	252	24	21	18	35	1.95
30681986--30682281	56	5.3	57	80	6	284	24	22	17	35	1.96
30681991--30682265	84	3.3	84	80	4	313	24	21	18	35	1.95
30682146--30682197	13	3.8	13	73	9	50	25	19	17	38	1.93
30689031--30689317	29	9.8	29	79	6	242	22	25	14	38	1.91
30689128--30689203	30	2.5	30	91	0	116	21	26	15	36	1.93
30707565--30707808	120	2.0	122	91	3	393	31	15	15	38	1.88
30709033--30709076	21	2.1	21	100	0	88	38	9	13	38	1.77
30709032--30709087	21	2.8	19	87	10	85	37	8	16	37	1.80
30709045--30709110	23	3.0	23	82	12	77	37	6	16	39	1.74
30709076--30709120	23	2.0	23	86	4	65	33	4	15	46	1.66
30709312--30709356	23	2.0	23	81	0	54	22	0	15	62	1.33
30709581--30709605	13	1.9	13	100	0	50	32	0	0	68	0.90
30712053--30712084	15	2.1	16	94	5	57	12	6	3	78	1.06
30712058--30712107	19	2.9	17	82	11	50	24	8	0	68	1.16
30713668--30714384	358	2.0	359	99	0	1427	32	20	12	34	1.91
30726231--30726322	37	2.4	38	82	8	100	51	5	2	41	1.37
30728254--30728278	11	2.3	11	100	0	50	48	8	20	24	1.76
30733420--30733485	34	1.9	34	87	0	96	30	19	22	27	1.98
30733689--30733729	19	2.2	19	90	0	64	75	2	0	21	0.92
30733692--30733728	13	2.9	13	92	4	58	78	2	0	18	0.87
30733689--30733733	6	6.7	7	82	12	51	73	2	0	24	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30737183--30737226	15	2.9	16	90	10	74	70	6	4	18	1.27
30738861--30738920	29	2.1	29	87	6	86	46	10	5	38	1.59
30742291--30742400	45	2.6	43	79	11	120	32	29	5	32	1.80
30742381--30742448	16	4.2	16	92	0	109	35	35	0	29	1.58
30742603--30742642	14	2.9	13	88	7	53	65	0	12	22	1.26
30743441--30743473	15	2.3	15	89	5	50	69	0	3	27	1.03
30744071--30744125	27	2.0	27	100	0	110	29	10	18	41	1.84
30746269--30746707	125	3.5	125	90	3	681	30	18	21	28	1.97
30749840--30749864	8	3.1	8	100	0	50	12	0	36	52	1.39
30749856--30749926	21	3.4	21	86	3	90	25	0	30	43	1.55
30749958--30749997	7	5.9	7	83	16	57	52	0	0	47	1.00
30749955--30749997	12	3.3	12	78	15	50	53	0	0	46	1.00
30759924--30760096	43	4.0	43	100	0	346	56	6	9	27	1.57
30764187--30764296	27	4.1	27	77	4	105	29	25	8	37	1.85
30782665--30782704	21	1.9	21	85	10	55	52	12	5	30	1.60
30786550--30786584	6	5.8	6	96	0	61	34	2	51	11	1.53
30789948--30789989	20	2.2	19	86	4	57	35	2	9	52	1.47
30792747--30792861	43	2.6	42	75	16	101	25	17	26	31	1.97
30798866--30798905	16	2.5	16	95	0	71	20	7	27	45	1.78
30806756--30806827	27	2.7	27	84	0	99	34	18	5	41	1.73
30807410--30807441	16	2.0	16	100	0	64	37	6	0	56	1.25
30812349--30812386	18	2.1	18	85	14	51	15	18	2	63	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30818477--30818576	23	4.3	23	81	0	110	47	24	20	9	1.78
30818477--30818576	46	2.2	46	87	3	139	47	24	20	9	1.78
30820321--30820370	26	1.9	26	91	0	82	24	34	24	18	1.96
30832881--30832921	22	2.0	22	85	9	59	36	0	2	60	1.10
30839431--30839469	16	2.4	16	91	0	60	48	2	12	35	1.55
30839947--30839989	23	2.0	23	86	9	63	60	9	6	23	1.51
30841258--30841589	44	7.5	44	65	17	161	27	24	17	30	1.97
30841221--30841593	132	2.8	132	93	0	620	26	23	18	31	1.97
30847303--30847341	16	2.4	16	91	0	60	53	2	7	35	1.43
30847706--30847735	12	2.6	12	94	5	53	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145