Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  145  of  145  ( 17310 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47942492--47942527
15
2.5
14
86
8
54
44
8
0
47
1.33
47943148--47943759
45
13.6
45
78
5
501
32
16
19
31
1.94
47943148--47943704
222
2.5
226
83
5
675
33
16
19
30
1.94
47943148--47943698
89
6.1
89
77
5
428
33
16
19
30
1.94
47943148--47943693
141
4.0
134
78
6
499
33
16
19
30
1.94
47945425--47945578
76
2.0
77
98
1
301
36
9
6
48
1.61
47946277--47946336
29
2.1
28
87
6
86
23
13
16
46
1.82
47948244--47948277
15
2.3
15
100
0
68
41
0
0
58
0.98
47950126--47950284
79
2.0
80
98
1
311
45
5
10
39
1.60
47950253--47950278
2
13.0
2
100
0
52
50
0
0
50
1.00
47952118--47952149
12
2.6
13
85
14
50
59
3
0
37
1.13
47952949--47953025
37
2.1
35
83
4
91
44
10
11
33
1.75
47954407--47954450
23
1.9
23
86
9
63
34
0
0
65
0.93
47958053--47958090
9
4.2
9
96
0
58
36
26
10
26
1.89
47958233--47958276
18
2.4
18
88
0
61
11
4
43
40
1.61
47958703--47958729
14
1.9
14
100
0
54
59
37
0
3
1.15
47959957--47959992
3
12.0
3
100
0
72
0
0
33
66
0.92
47960032--47960059
8
3.5
8
100
0
56
50
14
0
35
1.43
47960118--47960154
4
9.2
4
93
0
65
24
0
2
72
0.97
47963618--47963653
18
1.9
19
94
5
65
38
0
5
55
1.23
47963797--47963838
10
4.0
10
80
20
50
76
9
14
0
1.02
47963797--47963846
11
4.5
11
83
14
59
74
8
18
0
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47963797--47963853
22
2.6
20
76
17
51
71
8
19
0
1.11
47963850--47963875
11
2.4
11
100
0
52
50
7
42
0
1.31
47967741--47967786
18
2.6
18
93
3
76
39
0
13
47
1.42
47968513--47969221
341
2.1
340
93
0
1211
36
20
21
22
1.95
47970164--47970213
26
1.9
26
84
15
68
16
2
30
52
1.55
47970716--47970747
16
2.0
16
100
0
64
62
6
6
25
1.42
47971009--47971068
24
2.5
25
73
10
63
28
43
1
26
1.65
47971009--47971042
12
2.9
12
86
4
52
29
41
0
29
1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145

The End!