genome.fa.s13.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  36  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12895644--12895746	45	2.2	45	86	3	134	29	24	16	30	1.96
12895762--12895801	21	1.9	21	84	0	53	37	15	12	35	1.85
12897756--12897791	16	2.3	15	90	4	54	2	22	0	75	0.94
12898053--12898151	48	2.0	49	96	3	182	15	26	2	56	1.50
12900239--12900290	24	2.2	24	89	6	79	30	1	9	57	1.42
12901954--12902018	20	3.3	20	70	16	55	32	0	6	61	1.21
12902094--12902141	15	3.0	15	77	14	51	33	0	2	64	1.05
12902073--12902149	18	4.4	18	70	21	56	33	0	2	63	1.08
12907890--12907932	23	1.9	22	85	4	59	51	6	4	37	1.50
12910920--12910969	22	2.2	23	82	3	57	42	14	8	36	1.74
12921668--12921720	13	4.1	13	85	0	79	35	24	7	32	1.84
12923985--12924026	16	2.6	16	78	14	50	16	14	16	52	1.75
12925351--12925380	3	10.0	3	92	0	51	3	33	0	63	1.11
12928377--12928434	31	2.0	30	83	12	77	51	12	5	31	1.61
12930021--12930072	23	2.3	23	89	0	77	42	23	7	26	1.81
12935826--12935869	23	1.9	23	86	9	63	45	9	0	45	1.35
12936442--12936840	199	2.0	200	99	0	791	39	5	10	44	1.61
12944687--12944718	16	2.0	16	93	0	55	25	15	0	59	1.36
12944946--12945068	48	2.5	50	80	12	137	31	27	17	23	1.97
12946607--12946666	30	2.0	31	83	3	77	41	0	38	20	1.52
12949077--12949152	23	3.3	23	71	10	73	34	9	30	26	1.87
12949119--12949244	23	5.4	23	75	3	110	30	18	32	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12949128--12949244	46	2.5	46	80	5	148	29	18	32	18	1.95
12951681--12951712	16	1.9	17	93	6	57	37	21	0	40	1.54
12951873--12952036	43	3.9	42	77	16	169	31	29	17	21	1.96
12959106--12959144	20	2.0	20	89	0	60	17	5	10	66	1.39
12959111--12959151	20	2.0	20	85	0	55	19	4	9	65	1.40
12960629--12960704	9	8.4	9	92	0	116	44	23	7	23	1.79
12961286--12961317	11	3.1	11	91	8	50	68	0	6	25	1.12
12968132--12968309	25	7.1	25	72	6	94	19	26	19	34	1.95
12968117--12968382	50	5.3	50	70	9	150	20	25	19	34	1.96
12973309--12973336	14	2.0	14	100	0	56	28	28	7	35	1.84
12974234--12974298	30	2.1	31	91	2	105	35	15	4	44	1.67
12975339--12975382	12	3.6	12	84	6	52	43	2	4	50	1.35
12977111--12977226	58	2.1	58	87	8	168	36	6	3	54	1.42
12977154--12977178	10	2.5	10	100	0	50	24	8	8	60	1.52
12977128--12977239	57	2.0	57	89	7	165	36	4	4	54	1.41
12986466--12986517	24	2.2	24	85	0	68	53	9	3	32	1.51
12993060--12993108	22	2.2	22	88	0	71	22	20	20	36	1.95
12998620--12998838	51	4.3	52	78	4	223	26	16	26	30	1.97
12998710--12998806	50	1.9	50	91	0	158	24	16	27	30	1.96
13002549--13002680	43	3.1	42	100	0	237	6	7	25	60	1.48
13019884--13019921	20	1.9	20	88	0	58	39	13	10	36	1.79
13022638--13022849	51	4.3	51	85	8	285	33	13	22	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13022689--13022848	44	3.5	44	85	6	194	33	13	23	30	1.92
13027820--13027910	14	6.7	14	77	9	75	32	20	2	43	1.64
13027837--13027910	27	2.8	27	88	10	91	36	20	1	41	1.61
13027823--13027909	40	2.1	41	85	6	115	33	20	2	43	1.65
13027848--13027910	13	4.7	13	80	5	72	34	20	0	44	1.52
13027848--13027910	27	2.3	26	92	7	108	34	20	0	44	1.52
13034935--13035008	36	2.0	37	97	2	141	58	2	10	28	1.46
13035132--13035160	14	2.0	15	93	6	51	55	3	20	20	1.58
13041873--13041922	17	2.9	16	75	13	55	46	16	18	20	1.85
13041851--13042009	18	8.8	17	70	10	102	43	11	15	30	1.81
13041851--13042009	36	4.4	35	73	10	115	43	11	15	30	1.81
13041893--13042008	54	2.1	56	84	4	157	43	11	14	30	1.80
13042479--13042530	20	2.6	19	88	8	77	0	21	0	78	0.74
13042479--13042535	11	5.5	11	82	16	59	0	21	0	78	0.74
13042487--13042536	18	2.6	20	90	6	77	0	18	0	82	0.68
13042488--13042537	25	2.0	26	92	4	84	0	18	0	82	0.68
13042734--13042768	18	1.9	18	88	0	52	0	17	45	37	1.48
13042997--13043040	16	2.8	16	86	3	54	0	25	2	72	0.96
13043428--13043562	58	2.3	59	85	11	188	38	1	23	36	1.64
13043427--13043573	30	5.0	30	80	6	167	38	2	23	35	1.67
13044770--13044836	30	2.3	28	84	5	80	58	4	4	32	1.38
13059841--13059897	26	2.1	27	83	3	71	35	3	3	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13066599--13066677	22	3.7	21	68	13	54	50	2	1	45	1.23
13067915--13067967	16	3.2	16	75	5	52	26	3	0	69	1.05
13067727--13068193	231	2.0	232	99	0	918	35	7	3	52	1.47
13068146--13068224	16	4.8	16	76	14	72	25	3	1	69	1.12
13069946--13069986	21	2.0	21	85	0	55	63	7	0	29	1.21
13076473--13076524	21	2.5	21	100	0	104	23	25	23	28	1.99
13082687--13082950	124	2.1	124	100	0	528	15	31	30	23	1.95
13084930--13084955	13	2.0	13	100	0	52	76	0	7	15	0.99
13085059--13085101	4	11.0	4	95	5	79	48	0	0	51	1.00
13090246--13090295	23	2.1	24	85	7	66	24	4	18	54	1.61
13096616--13096670	27	1.9	29	85	10	78	21	1	7	69	1.23
13096635--13096681	22	2.2	21	84	3	58	23	6	4	65	1.33
13096933--13096984	21	2.3	22	83	9	61	65	0	5	28	1.16
13096933--13096984	22	2.3	21	81	15	52	65	0	5	28	1.16
13098049--13098091	2	21.5	2	100	0	86	0	48	0	51	1.00
13106579--13106645	31	2.2	31	86	5	93	62	2	2	31	1.25
13107376--13107433	28	2.1	29	87	6	84	24	3	5	67	1.27
13113653--13113679	13	2.1	13	100	0	54	29	14	7	48	1.71
13117694--13117740	17	3.0	15	77	20	51	36	2	0	61	1.08
13118991--13119066	23	3.3	23	73	14	68	46	1	5	47	1.33
13119089--13119118	15	1.9	15	93	6	51	66	10	16	6	1.41
13119076--13119118	16	2.8	16	82	13	54	69	9	16	4	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13119093--13119159	25	2.5	25	79	16	64	70	4	23	1	1.14
13125428--13125527	43	2.3	43	82	3	121	31	24	14	31	1.94
13127847--13127884	19	2.1	19	90	5	60	55	7	0	36	1.29
13128241--13128290	24	2.1	24	84	0	64	46	0	0	54	1.00
13128401--13128429	13	2.1	14	93	6	51	0	17	0	82	0.66
13162065--13162107	23	2.0	21	81	9	50	37	16	20	25	1.93
13177283--13177312	15	1.9	16	93	6	53	50	0	0	50	1.00
13181002--13181093	25	3.7	25	73	12	82	20	25	20	33	1.97
13180991--13181106	25	4.7	25	71	9	69	20	24	19	35	1.96
13182207--13182249	12	3.6	12	81	12	61	27	20	44	6	1.77
13182207--13182260	24	2.2	24	100	0	108	25	22	44	7	1.79
13182217--13182260	12	3.7	12	82	11	63	22	22	47	6	1.75
13199279--13199342	21	3.0	21	76	0	74	39	17	26	17	1.91
13199251--13199374	42	3.0	42	84	3	135	42	16	23	16	1.88
13199327--13199393	20	3.2	21	79	8	75	44	13	17	23	1.85
13199324--13199383	20	2.9	21	80	5	77	45	15	20	20	1.86
13199266--13199393	42	3.1	42	83	5	118	43	15	21	19	1.87
13206852--13206986	42	3.2	42	81	4	112	44	17	22	15	1.86
13206852--13206917	21	3.1	21	75	0	51	42	16	25	15	1.87
13226755--13226805	21	2.3	22	83	12	61	70	15	5	7	1.30
13226758--13226805	24	2.0	24	88	4	71	70	16	6	6	1.28
13227307--13227357	26	1.9	26	84	4	66	25	11	1	60	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13246236--13246408	92	1.9	91	83	3	222	43	12	11	32	1.79
13248607--13248645	4	9.8	4	94	0	69	25	0	23	51	1.49
13252181--13252231	26	2.0	26	96	0	93	27	3	7	60	1.42
13253114--13253174	17	3.5	17	71	20	54	27	11	11	49	1.73
13253106--13253176	36	2.0	36	94	5	126	28	11	12	47	1.76
13253106--13253157	19	2.9	18	72	16	54	26	11	13	48	1.77
13258020--13258080	17	3.5	17	71	20	54	27	11	11	49	1.73
13258012--13258082	36	2.0	36	94	5	126	28	11	12	47	1.76
13258012--13258063	19	2.9	18	72	16	54	26	11	13	48	1.77
13259652--13259718	3	22.7	3	84	6	84	62	1	2	32	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145