genome.fa.s13.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  128  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42055897--42055962	28	2.4	28	84	0	96	30	0	19	50	1.48
42062360--42062398	20	2.0	19	85	14	53	51	0	10	38	1.36
42067147--42067198	17	2.9	17	80	11	52	65	5	1	26	1.26
42068513--42068564	17	2.9	17	80	11	52	65	5	1	26	1.26
42068658--42068708	19	2.8	18	72	13	50	35	1	1	60	1.19
42070367--42070432	28	2.3	29	78	14	84	43	3	0	53	1.16
42070945--42070971	14	1.9	14	100	0	54	55	7	14	22	1.64
42079555--42079632	39	2.0	39	94	0	138	17	29	26	25	1.98
42086042--42086111	19	3.4	21	71	21	58	35	1	2	60	1.21
42088953--42088984	14	2.3	14	94	0	55	37	21	15	25	1.93
42090679--42090730	26	2.0	26	100	0	104	42	11	26	19	1.85
42094617--42094647	14	2.2	14	94	0	53	19	3	9	67	1.33
42097600--42097645	15	3.1	15	75	25	53	26	4	2	67	1.21
42104215--42104719	252	2.0	253	99	0	1003	36	10	8	43	1.70
42114114--42114195	39	2.1	39	86	4	112	52	4	7	35	1.51
42116521--42116571	25	2.0	27	81	14	63	70	3	0	25	1.04
42117280--42117318	19	2.1	19	100	0	78	58	20	5	15	1.55
42122099--42122129	10	3.1	10	90	0	53	77	3	0	19	0.90
42124470--42124851	46	9.0	43	72	15	296	27	21	19	31	1.98
42124560--42124836	38	6.7	39	72	17	190	29	22	19	29	1.98
42124454--42124851	169	2.4	169	95	0	708	27	21	18	31	1.97
42136628--42136659	10	3.1	10	91	8	55	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42136628--42136659	11	3.0	11	95	4	57	81	0	0	18	0.70
42137659--42137723	30	2.2	28	78	7	76	56	4	18	20	1.58
42139190--42139216	12	2.2	12	100	0	54	44	0	7	48	1.31
42139366--42139421	21	2.7	21	88	0	76	28	30	8	32	1.88
42140192--42140236	23	2.0	23	100	0	90	62	8	6	22	1.48
42141658--42141691	14	2.4	14	85	0	50	0	47	0	52	1.00
42153072--42153174	42	2.5	42	82	9	129	29	13	18	38	1.89
42153116--42153176	21	3.0	20	75	4	59	27	11	19	40	1.86
42160906--42161008	42	2.4	43	84	7	131	38	18	13	29	1.89
42169416--42169467	19	2.9	19	80	8	65	42	7	0	50	1.31
42170384--42170424	21	2.0	21	85	9	57	19	9	17	53	1.70
42172698--42172742	22	2.1	22	87	4	65	24	11	0	64	1.26
42173349--42173430	40	2.0	41	86	6	114	28	14	25	31	1.95
42180578--42180618	21	2.0	21	85	9	57	19	9	17	53	1.70
42182892--42182936	22	2.1	22	87	4	65	24	11	0	64	1.26
42183543--42183624	40	2.0	41	86	6	114	28	14	25	31	1.95
42185842--42186548	236	3.0	236	92	0	1180	33	15	18	31	1.93
42188798--42189226	236	1.8	237	93	1	743	33	16	18	32	1.93
42198220--42198296	31	2.5	31	91	2	120	16	14	16	51	1.76
42198452--42198490	17	2.5	15	81	18	53	48	0	0	51	1.00
42200710--42200748	18	2.2	18	100	0	78	33	41	0	25	1.56
42209569--42209669	51	2.0	51	94	3	177	15	13	23	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42209955--42209991	1	37.0	1	100	0	74	100	0	0	0	0.00
42220418--42220463	23	2.0	23	83	12	58	56	0	6	36	1.25
42220413--42220466	28	1.9	28	85	7	74	59	0	5	35	1.21
42220460--42220493	4	8.0	4	87	12	50	70	2	2	23	1.15
42224149--42224389	119	2.0	119	99	0	473	31	17	18	32	1.94
42237884--42237917	4	8.5	4	86	0	50	23	5	0	70	1.09
42237968--42238027	17	3.4	16	75	22	50	18	3	3	75	1.09
42237990--42238036	21	2.2	22	88	3	69	17	2	4	76	1.04
42240041--42240087	13	3.5	13	94	2	76	12	6	2	78	1.02
42240012--42240103	37	2.5	36	81	13	91	13	6	3	77	1.09
42240167--42240191	13	1.9	13	100	0	50	36	0	0	64	0.94
42240132--42240199	35	2.0	34	85	2	91	39	2	0	57	1.14
42240154--42240245	46	1.9	46	82	8	112	42	2	1	54	1.19
42240098--42240228	22	5.6	22	65	19	59	40	2	3	54	1.29
42240204--42240282	30	2.7	28	81	12	88	43	1	1	54	1.16
42240293--42240332	19	2.0	21	90	9	66	50	0	0	50	1.00
42240543--42240573	16	1.9	16	93	0	53	12	0	16	70	1.16
42244991--42245053	25	2.6	25	75	7	67	25	23	19	31	1.98
42249301--42249349	21	2.3	21	82	0	62	30	4	0	65	1.11
42249438--42249481	23	1.9	23	85	0	61	40	0	4	54	1.21
42249483--42249530	25	1.9	25	84	16	64	60	4	2	33	1.27
42249694--42249760	22	3.0	21	76	18	64	53	2	1	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42259560--42259589	9	3.3	9	95	0	51	76	0	10	13	1.01
42261103--42261483	44	8.7	44	91	0	564	20	26	21	31	1.98
42272110--42272176	11	6.4	11	70	20	54	61	0	2	35	1.12
42272083--42272225	40	3.5	40	90	4	207	62	0	2	34	1.09
42281246--42281281	15	2.4	15	85	0	54	52	5	25	16	1.65
42294100--42294148	4	13.0	4	87	12	77	53	0	0	46	1.00
42294100--42294148	7	6.5	8	95	4	77	53	0	0	46	1.00
42305151--42305302	42	3.6	42	83	9	202	25	23	20	30	1.98
42305151--42305310	84	1.9	84	88	2	241	24	22	21	31	1.98
42311709--42311804	14	6.6	14	70	10	59	36	38	3	21	1.70
42311965--42311995	16	1.9	16	93	0	53	29	51	0	19	1.47
42312336--42312393	30	1.9	30	96	0	107	31	32	17	18	1.94
42312260--42312465	103	2.0	103	98	0	394	26	28	21	24	1.99
42312551--42312637	40	2.2	38	82	11	97	18	22	24	34	1.96
42316730--42316857	60	2.1	60	97	0	238	24	9	14	51	1.72
42318494--42318533	12	3.2	12	86	10	53	22	22	10	45	1.82
42320906--42321125	109	2.0	109	98	0	422	21	18	22	37	1.94
42323976--42324082	41	2.6	42	74	4	101	17	26	22	33	1.96
42324129--42324240	41	2.7	41	78	8	120	18	23	24	33	1.97
42324051--42324240	78	2.4	78	81	5	202	17	23	23	35	1.95
42324769--42324807	15	2.7	14	80	7	51	20	0	38	41	1.53
42324742--42324808	14	4.9	14	77	14	59	26	0	31	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42325847--42326029	90	2.0	90	97	2	350	42	5	13	39	1.67
42326190--42326241	27	1.9	27	84	0	68	42	0	9	48	1.36
42329183--42329233	23	2.2	23	86	6	68	43	3	1	50	1.31
42329284--42329362	16	5.0	16	75	13	74	46	17	1	34	1.56
42329321--42329361	13	2.8	15	85	14	59	46	19	0	34	1.50
42329433--42329491	27	2.3	24	85	8	73	54	18	0	27	1.44
42332392--42332821	43	10.0	43	76	7	212	25	23	23	27	2.00
42332380--42332822	86	5.1	84	77	7	293	24	23	24	27	2.00
42337930--42337985	21	2.7	21	97	0	103	25	5	14	55	1.60
42343711--42343973	87	3.0	87	98	0	508	21	17	22	38	1.93
42345619--42345688	33	2.1	33	100	0	140	22	12	15	48	1.79
42350038--42350488	224	2.0	225	99	0	895	36	7	9	46	1.65
42357387--42357421	16	2.1	17	89	5	54	68	0	0	31	0.90
42357865--42357909	22	2.1	22	87	4	65	42	2	0	55	1.12
42365984--42366368	49	8.1	48	72	13	160	34	18	21	25	1.96
42365984--42366309	49	6.8	48	74	11	208	32	19	21	26	1.97
42366077--42366238	89	1.8	87	86	5	236	31	19	22	26	1.98
42366149--42366309	50	3.2	50	84	0	198	30	21	23	24	1.99
42370283--42370345	21	3.0	21	77	17	67	26	7	0	65	1.20
42370279--42370372	43	2.2	43	83	5	118	27	9	1	61	1.34
42370297--42370461	90	1.8	90	82	8	210	27	11	1	58	1.43
42371182--42371206	13	1.9	13	100	0	50	8	0	24	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42373210--42373340	41	3.2	41	91	0	199	25	21	27	25	1.99
42376524--42376925	49	8.2	49	81	6	390	24	24	18	32	1.97
42376524--42376917	150	2.7	146	78	8	422	25	24	19	31	1.98
42376524--42376925	101	4.1	97	78	7	386	24	24	18	32	1.97
42378518--42378547	5	6.0	5	100	0	60	0	40	60	0	0.97
42379699--42379749	19	2.7	19	84	3	59	68	3	5	21	1.27
42380085--42380136	21	2.6	19	77	14	52	63	0	3	32	1.12
42380582--42380808	9	23.2	9	64	20	57	33	3	4	59	1.35
42380624--42380676	22	2.3	23	84	9	65	37	0	7	54	1.29
42380752--42380804	12	4.8	12	80	15	62	26	0	7	66	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145