genome.fa.s13.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  101  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34201450--34201536	39	2.2	38	82	6	102	33	2	52	11	1.50
34201648--34201689	16	2.6	16	88	3	57	26	21	30	21	1.98
34202902--34203087	44	4.2	43	86	2	219	22	17	21	38	1.93
34202902--34203073	88	2.0	88	87	2	247	23	17	20	38	1.93
34203729--34203784	27	2.1	27	100	0	112	35	14	14	35	1.86
34203865--34203906	21	2.0	21	86	13	61	42	11	9	35	1.74
34206040--34206081	19	2.2	19	83	12	50	54	9	9	26	1.63
34210485--34210514	14	2.1	14	93	0	51	43	20	10	26	1.83
34214039--34214064	3	8.7	3	100	0	52	65	0	0	34	0.93
34214066--34214142	3	27.7	3	78	15	76	32	2	2	62	1.23
34215029--34215065	18	2.1	18	94	0	65	24	21	29	24	1.99
34223877--34223901	12	2.1	12	100	0	50	24	32	8	36	1.84
34224479--34225041	132	4.3	132	91	2	841	28	20	26	24	1.99
34224579--34224901	44	7.3	44	64	20	111	28	21	26	24	1.99
34226641--34226680	3	13.0	3	89	5	62	35	2	0	62	1.09
34226648--34226679	16	2.0	16	100	0	64	37	0	0	62	0.95
34226641--34226688	9	5.8	8	81	16	53	33	2	0	64	1.05
34227964--34228012	10	5.0	10	78	14	57	55	0	4	40	1.19
34227940--34228012	10	7.6	9	70	23	51	54	0	4	41	1.19
34228559--34228597	19	2.1	19	95	0	69	35	0	2	61	1.10
34228555--34228614	29	2.0	31	90	6	97	36	1	1	60	1.17
34228555--34228606	10	5.2	10	88	6	79	36	0	1	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34246257--34246283	3	9.0	3	100	0	54	66	0	0	33	0.92
34246722--34246793	29	2.4	29	81	4	81	26	9	12	51	1.70
34246976--34247006	14	2.2	14	100	0	62	41	12	6	38	1.69
34252118--34252148	14	2.2	14	100	0	62	41	12	6	38	1.69
34253004--34253049	23	2.0	23	100	0	92	30	0	17	52	1.45
34255207--34255282	36	2.1	36	92	0	125	46	1	2	50	1.24
34256389--34256440	16	3.3	15	76	7	50	19	15	0	65	1.27
34265088--34265129	6	7.0	6	100	0	84	50	0	16	33	1.46
34265096--34265135	18	2.2	18	90	0	62	57	0	12	30	1.36
34268610--34269283	105	6.4	105	83	1	751	34	13	18	33	1.90
34283228--34283260	2	16.5	2	93	0	57	48	0	3	48	1.17
34293336--34293387	20	2.6	20	76	11	61	15	32	15	36	1.89
34294686--34294779	25	3.8	25	73	16	86	27	22	22	27	1.99
34301147--34301238	25	3.7	25	75	16	100	28	23	21	26	1.99
34302872--34302956	20	4.2	20	87	1	125	14	29	15	41	1.86
34311918--34311949	15	2.1	15	100	0	64	62	0	12	25	1.30
34332040--34332065	12	2.2	12	100	0	52	46	30	15	7	1.74
34333457--34334002	44	12.3	44	72	6	280	31	17	23	28	1.96
34333524--34334034	133	3.8	132	73	10	437	32	17	23	27	1.96
34333642--34333987	90	3.9	89	85	5	457	32	17	23	26	1.97
34333615--34333980	178	2.1	178	84	4	479	32	17	23	26	1.97
34340800--34340879	29	2.8	29	80	1	90	41	21	12	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34340805--34340982	28	6.2	28	76	8	155	38	19	15	27	1.91
34340830--34340990	57	2.8	55	74	9	153	36	21	14	27	1.93
34343455--34343480	8	3.2	8	100	0	52	15	0	0	84	0.62
34352623--34352912	145	2.0	145	100	0	580	24	15	25	33	1.95
34352926--34353087	36	4.5	36	98	0	306	15	13	35	35	1.87
34355506--34355778	136	2.0	137	99	0	539	38	7	8	45	1.61
34356867--34356909	21	2.1	21	83	8	54	44	9	2	44	1.49
34359851--34359875	2	12.5	2	100	0	50	52	0	0	48	1.00
34360123--34360147	12	2.1	12	100	0	50	20	8	0	72	1.10
34365090--34365142	24	2.2	24	82	0	61	50	9	5	33	1.58
34368651--34368692	17	2.3	18	80	12	50	35	0	7	57	1.26
34369105--34369145	18	2.3	18	84	12	50	24	0	2	73	0.96
34377745--34377787	18	2.4	18	92	0	68	41	6	9	41	1.64
34378279--34378315	16	2.3	16	100	0	74	37	10	18	32	1.86
34380435--34380466	16	2.0	16	100	0	64	0	6	31	62	1.20
34384986--34385065	29	2.8	29	74	11	74	33	7	6	52	1.55
34387849--34387874	7	3.7	7	100	0	52	46	0	0	53	1.00
34388691--34388770	21	3.7	21	67	21	58	51	1	7	40	1.38
34388680--34388758	42	1.9	41	84	7	106	49	1	8	40	1.42
34389419--34389453	16	2.1	17	89	5	54	51	0	0	48	1.00
34389953--34390003	22	2.3	22	86	6	68	31	31	0	37	1.58
34390037--34390102	32	2.2	30	89	8	98	31	1	0	66	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392114--34392894	28	27.8	28	98	0	1370	43	24	0	31	1.55
34392903--34393027	56	2.2	56	91	2	198	38	12	7	41	1.71
34397201--34397311	47	2.4	47	92	0	177	21	24	20	33	1.97
34402903--34403026	42	3.0	42	80	0	140	25	22	33	17	1.96
34404001--34404073	20	3.7	20	76	7	60	9	21	15	53	1.70
34405372--34405409	3	12.7	3	100	0	76	68	0	0	31	0.90
34407193--34407250	23	2.6	23	81	10	68	41	1	5	51	1.34
34407207--34407250	23	1.9	23	95	0	79	40	0	6	52	1.28
34410767--34410809	15	2.8	15	75	3	50	55	0	11	32	1.36
34413737--34413769	14	2.4	14	90	5	50	27	12	0	60	1.32
34414032--34414072	21	2.0	21	85	9	57	41	2	12	43	1.55
34414929--34414965	14	2.9	13	85	14	51	72	0	27	0	0.84
34414929--34414966	13	2.9	14	88	11	55	73	0	26	0	0.83
34419672--34419700	7	4.3	7	95	4	51	0	10	0	89	0.48
34419670--34419708	15	2.6	16	84	12	55	0	10	5	84	0.76
34420658--34420856	98	2.0	99	99	0	391	31	4	23	41	1.73
34426960--34427011	24	2.2	24	85	0	68	50	7	3	38	1.50
34431251--34431326	24	3.2	24	86	0	107	50	9	6	34	1.60
34436232--34436266	2	17.5	2	100	0	70	51	0	48	0	1.00
34449007--34449046	20	2.0	20	85	5	53	12	15	20	52	1.74
34453019--34453044	12	2.2	12	100	0	52	11	23	7	57	1.59
34461409--34461502	29	3.2	29	87	3	127	22	22	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34461451--34461512	29	2.1	29	84	0	79	22	27	25	24	2.00
34464914--34464956	11	3.9	11	82	8	52	76	2	20	0	0.89
34465053--34465091	9	4.3	9	81	12	53	74	0	2	23	0.94
34465053--34465096	18	2.7	15	78	18	52	75	0	2	22	0.92
34465059--34465093	18	1.9	18	94	0	61	77	0	2	20	0.90
34465735--34465765	13	2.4	13	100	0	62	32	12	6	48	1.67
34473225--34473280	27	2.1	27	93	0	94	35	14	19	30	1.91
34473478--34473533	27	2.1	27	93	0	94	32	14	23	30	1.94
34473138--34473646	253	2.0	252	96	0	928	34	13	19	32	1.91
34473639--34473669	10	2.9	11	90	9	55	58	0	9	32	1.31
34473924--34473956	17	1.9	18	88	11	52	48	0	9	42	1.35
34475348--34475390	20	2.2	20	87	4	61	58	9	6	25	1.54
34476822--34477264	241	1.8	241	90	0	706	24	14	20	40	1.90
34478254--34478280	2	13.5	2	100	0	54	51	0	0	48	1.00
34478682--34478706	5	5.0	5	100	0	50	20	0	0	80	0.72
34479166--34479635	232	2.0	233	99	0	926	29	14	19	36	1.91
34486301--34486330	15	1.9	15	93	6	51	0	43	43	13	1.43
34487725--34487764	18	2.2	18	100	0	80	22	15	5	57	1.57
34488829--34488991	75	2.2	75	82	4	204	36	17	19	26	1.94
34489022--34489187	84	2.0	84	89	0	251	33	19	21	25	1.97
34488720--34489305	198	3.0	197	88	3	850	33	17	22	26	1.96
34489106--34489752	114	5.7	113	81	2	785	33	16	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34489111--34489739	228	2.8	228	91	0	1010	33	16	23	26	1.95
34490046--34490113	13	5.5	13	75	19	65	5	0	47	47	1.26
34490049--34490112	7	9.3	7	83	6	69	6	0	50	43	1.27
34490366--34490392	12	2.2	12	100	0	54	59	0	0	40	0.98
34490455--34490490	18	2.0	18	100	0	72	50	11	16	22	1.77
34491734--34491812	39	2.0	39	87	4	115	16	10	20	53	1.71
34492435--34492508	37	2.0	37	89	0	112	40	14	1	43	1.54
34492547--34492584	16	2.4	16	86	8	51	47	15	2	34	1.60
34492552--34492637	25	3.5	24	76	6	73	44	13	1	40	1.52
34492552--34492711	50	3.2	49	73	12	137	43	15	3	38	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145