genome.fa.s13.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  105  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35403784--35403937	27	5.8	27	80	4	179	22	16	18	41	1.90
35403790--35403937	53	2.8	53	84	5	176	22	17	16	42	1.89
35412808--35412842	18	2.0	17	88	5	52	60	17	5	17	1.55
35413199--35413251	26	2.0	24	82	13	61	54	0	9	35	1.33
35413457--35413494	14	2.7	14	91	0	58	57	2	2	36	1.26
35413451--35413494	17	2.6	16	79	10	52	59	2	2	36	1.23
35414613--35414660	8	5.8	8	80	7	51	20	0	2	77	0.88
35414614--35414642	14	2.1	14	100	0	58	20	0	0	79	0.74
35414610--35414659	21	2.2	24	83	13	63	20	0	2	78	0.86
35431886--35431922	19	1.9	19	88	0	56	62	0	5	32	1.18
35433250--35433624	43	8.7	43	88	0	561	20	30	22	27	1.98
35433250--35433624	86	4.4	86	97	0	678	20	30	22	27	1.98
35434011--35434167	46	3.3	46	72	15	154	35	1	17	46	1.56
35434017--35434072	17	3.1	17	74	18	58	37	0	14	48	1.44
35434092--35434163	21	3.2	21	74	14	72	34	0	16	48	1.47
35434832--35434949	57	2.1	58	98	1	229	46	16	5	31	1.69
35436640--35437241	199	3.0	199	88	0	864	29	24	15	31	1.95
35437350--35437457	48	2.2	48	86	1	144	40	0	11	47	1.45
35437477--35437523	9	5.2	9	87	10	69	31	8	0	59	1.27
35437485--35437528	8	5.2	8	86	13	54	34	9	0	56	1.31
35437485--35437528	17	2.6	17	92	7	72	34	9	0	56	1.31
35437517--35437571	21	2.7	20	71	23	51	41	7	1	49	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35437664--35438902	114	10.9	114	90	0	1940	28	26	22	22	1.99
35437664--35438902	228	5.4	228	96	0	2174	28	26	22	22	1.99
35439761--35439820	22	2.8	21	75	12	59	38	3	8	50	1.49
35440216--35440265	24	2.1	24	81	7	57	76	2	12	10	1.11
35443586--35443671	43	2.0	43	97	0	163	29	23	20	26	1.99
35443678--35443726	23	2.1	23	96	0	89	32	14	16	36	1.89
35445336--35445574	42	5.7	42	82	4	250	46	15	21	17	1.84
35445317--35445574	21	12.4	21	73	4	191	45	15	21	17	1.85
35445336--35445574	84	2.8	84	87	2	320	46	15	21	17	1.84
35447708--35447875	71	2.4	71	84	6	198	30	27	13	27	1.94
35452716--35452802	6	13.8	6	77	8	66	78	6	4	10	1.09
35452716--35452792	18	4.2	18	83	3	73	80	6	5	7	1.02
35454450--35454518	28	2.5	29	75	17	83	72	0	5	21	1.05
35461495--35461544	24	2.0	25	81	11	59	40	8	16	36	1.77
35466577--35466619	21	2.0	21	95	0	77	53	4	13	27	1.60
35473577--35473663	37	2.4	37	92	1	149	40	27	13	18	1.88
35479319--35479359	15	2.7	15	84	0	55	17	4	36	41	1.71
35482282--35482372	25	3.8	26	76	16	106	8	17	28	45	1.78
35482309--35482375	22	2.9	22	75	12	71	11	17	26	43	1.84
35482284--35482467	47	4.0	47	77	6	180	11	16	26	45	1.81
35483958--35484023	23	2.9	22	76	13	62	25	21	16	36	1.94
35485330--35485364	19	1.9	17	88	11	52	25	2	5	65	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35485330--35485370	18	2.2	19	83	12	50	26	4	4	63	1.35
35496704--35496820	25	4.6	25	71	15	78	32	31	15	20	1.94
35496772--35496838	26	2.6	26	83	4	73	31	31	14	22	1.94
35496787--35496838	26	2.0	26	88	3	77	34	26	13	25	1.93
35497599--35497679	40	2.0	40	100	0	162	43	24	7	24	1.80
35501405--35501777	27	13.9	27	80	5	315	18	16	21	43	1.88
35501405--35501777	54	6.9	54	80	3	367	18	16	21	43	1.88
35501415--35501777	81	4.5	80	81	4	397	18	16	20	44	1.87
35502459--35502500	12	3.5	12	75	12	50	23	40	0	35	1.55
35505578--35505632	16	3.5	16	76	18	62	38	0	1	60	1.08
35505577--35505687	30	3.7	32	78	10	108	39	0	5	54	1.30
35505776--35505867	30	3.1	30	75	9	89	40	1	5	53	1.31
35505595--35505955	180	2.0	181	99	0	715	35	11	9	44	1.72
35510576--35510618	22	2.0	22	90	4	70	25	0	20	53	1.46
35515926--35515950	13	1.9	13	100	0	50	32	16	20	32	1.94
35521651--35521710	30	2.0	31	83	9	79	38	1	40	20	1.62
35532083--35532122	19	2.1	19	95	0	71	50	0	2	47	1.14
35532737--35532780	18	2.5	17	85	14	54	59	2	0	38	1.10
35534551--35534689	70	2.0	70	94	0	242	27	10	17	44	1.82
35534859--35534958	49	2.0	49	100	0	200	60	22	6	12	1.53
35535184--35535222	17	2.2	17	86	4	51	66	2	2	28	1.18
35538814--35538849	3	12.0	3	100	0	72	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35540012--35540055	13	3.3	13	75	6	52	43	2	0	54	1.12
35540006--35540049	14	3.2	14	74	6	54	50	2	0	47	1.13
35540006--35540059	27	2.0	27	100	0	108	44	3	0	51	1.19
35544606--35544648	14	3.2	13	81	18	52	23	0	2	74	0.93
35546840--35546896	22	2.7	21	79	15	71	33	0	35	31	1.58
35555229--35555264	18	2.0	18	100	0	72	33	11	5	50	1.61
35555233--35555273	18	2.3	18	87	8	57	36	9	4	48	1.58
35555319--35555356	15	2.5	15	91	4	58	34	10	13	42	1.78
35560036--35560060	6	4.2	6	100	0	50	68	0	0	32	0.90
35561948--35562063	41	2.8	42	75	12	112	30	25	17	26	1.97
35561989--35562067	41	1.9	42	89	2	124	30	25	18	25	1.98
35562188--35562543	61	5.9	62	82	5	417	43	16	8	31	1.78
35562188--35562529	120	2.8	123	83	3	399	44	16	8	31	1.77
35562188--35562554	151	2.4	152	83	5	433	44	16	8	31	1.77
35562188--35562543	31	11.7	31	84	5	417	43	16	8	31	1.78
35568669--35568953	125	2.3	123	85	3	385	43	15	9	31	1.78
35568641--35568942	31	9.7	31	86	2	385	43	15	9	31	1.79
35570923--35570968	20	2.3	20	85	7	58	36	4	0	58	1.18
35577714--35577757	18	2.4	18	92	7	72	70	2	0	27	0.99
35578867--35578913	23	2.0	23	83	0	58	68	2	2	27	1.13
35581631--35581674	11	4.0	11	77	11	54	52	0	0	47	1.00
35581633--35581674	16	2.6	16	84	3	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35588148--35588190	19	2.1	21	83	8	54	74	6	13	4	1.19
35588562--35588764	71	2.9	69	76	9	203	35	14	3	46	1.61
35588861--35588915	23	2.4	23	87	6	76	36	18	0	45	1.49
35588861--35588915	11	4.8	12	72	17	53	36	18	0	45	1.49
35590022--35590053	11	2.8	12	86	13	50	0	15	3	81	0.82
35602580--35602749	51	3.4	50	81	6	173	30	25	14	29	1.95
35602612--35602753	50	2.8	51	88	4	216	29	25	16	28	1.97
35614427--35614475	24	2.0	26	84	8	66	77	2	18	2	0.96
35614424--35614476	27	2.0	26	82	14	63	79	1	16	1	0.92
35614424--35614475	26	2.0	27	85	11	72	78	1	17	1	0.93
35626134--35626239	41	2.6	41	81	0	104	35	31	17	15	1.91
35629675--35629745	5	14.2	5	80	11	67	0	25	0	74	0.82
35640572--35640602	7	4.4	7	91	0	53	83	3	12	0	0.75
35640720--35640752	9	3.7	9	88	12	50	75	0	9	15	1.03
35648664--35648732	30	2.3	30	82	0	84	17	28	33	20	1.95
35657325--35657351	6	4.5	6	100	0	54	51	0	0	48	1.00
35658359--35658393	15	2.2	16	90	5	54	51	0	5	42	1.25
35658368--35658407	19	2.0	20	90	4	64	50	0	7	42	1.30
35658370--35658421	11	5.1	10	79	9	52	46	1	7	44	1.43
35659511--35659699	30	6.3	29	83	2	207	33	9	18	38	1.83
35659511--35659707	89	2.2	89	85	0	259	33	10	17	38	1.84
35661627--35661667	18	2.2	18	86	4	55	48	9	0	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35662089--35662154	20	3.2	20	76	19	57	53	9	0	37	1.33
35663926--35664006	25	3.2	25	75	3	74	38	13	16	32	1.87
35668052--35668915	431	2.0	431	99	0	1719	26	18	25	30	1.98
35675619--35675668	6	8.7	6	78	8	50	48	2	2	48	1.24
35675603--35675685	23	3.6	23	75	14	73	45	4	3	45	1.42
35675619--35675668	17	3.0	16	83	11	64	48	2	2	48	1.24
35684987--35685178	50	3.8	50	75	9	169	21	14	30	33	1.93
35684993--35685173	100	1.8	101	84	6	251	22	14	29	33	1.94
35685273--35685316	23	1.9	22	82	17	54	38	0	25	36	1.56
35689503--35689537	17	2.0	18	88	5	54	22	2	0	74	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145