genome.fa.s13.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  37  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13260209--13260239	3	10.3	3	100	0	62	67	0	0	32	0.91
13264747--13264786	14	2.5	17	80	15	50	67	17	10	5	1.37
13265159--13265196	2	19.0	2	100	0	76	0	50	0	50	1.00
13267211--13267243	17	1.9	17	100	0	66	48	0	9	42	1.35
13272422--13272514	31	3.0	31	82	4	107	52	1	3	43	1.24
13279938--13279973	13	2.6	14	86	13	56	41	0	2	55	1.14
13295762--13295801	16	2.5	16	87	0	62	25	35	5	35	1.78
13301456--13301496	20	2.0	20	85	0	55	43	0	0	56	0.99
13310280--13310570	108	2.7	108	94	1	496	35	20	16	27	1.94
13310560--13310597	18	2.2	18	85	4	51	28	13	7	50	1.69
13310816--13310857	6	7.0	6	82	17	52	78	0	2	19	0.86
13311063--13311101	14	2.7	15	80	8	53	58	0	2	38	1.12
13312658--13312695	18	2.2	17	86	13	51	42	0	0	57	0.98
13312658--13312695	17	2.2	18	86	13	53	42	0	0	57	0.98
13315036--13315098	13	4.9	12	78	16	56	68	0	31	0	0.90
13315044--13315088	17	2.8	17	80	12	51	66	0	33	0	0.92
13315035--13315086	27	1.9	27	85	14	72	63	0	36	0	0.95
13315035--13315092	14	3.8	16	76	19	54	65	0	34	0	0.93
13319815--13319861	19	2.5	19	82	3	69	68	0	8	23	1.17
13327682--13327792	52	2.1	52	91	3	179	45	12	12	29	1.79
13328374--13328486	55	2.1	55	100	0	226	39	5	16	38	1.72
13335013--13335125	60	1.9	60	82	10	142	21	15	14	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13335426--13335495	31	2.3	31	90	5	106	47	15	15	21	1.83
13335651--13335835	58	3.2	58	80	4	194	47	13	16	22	1.81
13341338--13341380	14	2.9	15	79	10	52	41	0	16	41	1.48
13348599--13348651	26	2.0	26	85	7	72	60	3	1	33	1.26
13366463--13366558	37	2.6	37	80	8	115	30	23	1	44	1.60
13367319--13367381	3	20.7	3	93	3	99	63	1	0	34	1.04
13367633--13367801	82	2.1	82	82	10	204	26	22	8	42	1.82
13370642--13370683	14	2.9	15	82	7	59	38	2	0	59	1.10
13380241--13380308	35	1.9	35	82	5	84	51	23	0	25	1.48
13380327--13380415	41	2.2	40	80	8	99	22	22	15	39	1.92
13380353--13380433	41	2.0	41	87	0	117	20	27	13	38	1.90
13384754--13384798	22	2.0	24	82	8	58	44	8	0	46	1.34
13384763--13384806	23	1.9	23	81	9	54	45	9	0	45	1.35
13388163--13388242	30	2.6	29	75	9	79	57	0	5	37	1.21
13388234--13388284	19	2.7	19	84	3	68	60	3	1	33	1.26
13388234--13388376	10	15.0	9	67	15	58	62	2	4	30	1.28
13388295--13388373	20	3.9	19	77	14	79	63	1	6	29	1.27
13388295--13388372	40	1.9	41	84	7	106	64	1	6	28	1.26
13388396--13388427	11	2.8	11	95	4	55	28	9	0	62	1.26
13388552--13388633	10	8.2	10	77	9	51	29	2	1	67	1.11
13388561--13388662	9	10.6	9	72	15	62	33	1	1	62	1.17
13388551--13388662	29	3.8	30	76	6	97	33	1	1	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13388561--13388657	20	4.9	20	71	16	67	35	2	2	60	1.20
13388552--13388639	39	2.2	41	83	6	108	31	2	1	64	1.13
13391056--13391099	13	3.5	13	87	12	74	38	25	0	36	1.56
13392583--13392612	15	2.0	15	100	0	60	46	6	13	33	1.69
13394284--13394323	20	2.0	20	90	0	62	25	17	27	30	1.97
13394289--13394330	20	2.1	20	86	0	57	21	21	30	26	1.98
13397830--13398204	194	1.9	194	98	0	732	25	17	17	39	1.91
13399691--13399781	45	2.0	44	87	2	128	34	28	5	31	1.80
13399760--13399813	16	3.4	16	84	0	72	31	33	1	33	1.69
13401200--13401236	19	1.9	19	94	0	65	0	24	2	72	0.97
13403874--13403937	31	2.1	31	83	11	80	37	10	3	48	1.54
13404320--13404655	110	3.1	108	89	4	505	31	16	17	34	1.92
13407422--13407465	23	1.9	23	85	0	61	65	0	29	4	1.12
13408522--13408550	13	2.2	13	100	0	58	37	48	0	13	1.43
13408540--13408660	39	3.0	42	88	8	157	49	28	2	19	1.61
13408554--13408660	39	2.8	39	94	1	180	50	27	2	19	1.61
13408795--13408857	17	3.5	17	71	12	63	33	3	14	49	1.59
13408792--13408862	37	1.9	37	97	0	133	33	2	16	46	1.62
13408865--13408913	9	5.4	9	87	0	62	26	12	22	38	1.89
13410005--13410347	124	2.8	123	93	1	571	29	15	21	34	1.94
13413139--13413376	37	6.4	37	97	0	433	47	0	11	40	1.45
13413391--13413732	29	10.3	34	73	20	255	22	0	31	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13413391--13413764	64	5.8	64	78	12	399	22	0	31	45	1.52
13413391--13413732	128	2.6	133	90	7	518	22	0	31	45	1.53
13413612--13413653	18	2.2	20	87	8	61	19	0	30	50	1.48
13413588--13413693	47	2.2	47	88	1	149	22	0	30	47	1.52
13413553--13413711	76	2.0	77	85	8	212	22	0	31	46	1.52
13413636--13413764	29	4.5	29	86	2	172	21	0	31	46	1.52
13413524--13413732	111	1.9	109	85	6	291	22	0	31	45	1.52
13414270--13414310	18	2.3	18	86	0	64	41	4	31	21	1.74
13414964--13414992	7	4.1	7	100	0	58	58	13	0	27	1.36
13416166--13416312	22	6.4	22	72	16	111	45	0	27	26	1.54
13416132--13416296	73	2.3	73	92	1	269	46	0	26	27	1.58
13416257--13416312	10	5.2	10	77	14	58	48	0	30	21	1.51
13416803--13416863	29	2.0	32	84	15	85	27	9	6	55	1.57
13418924--13418975	24	2.2	24	85	0	68	53	9	3	32	1.51
13427523--13427558	11	3.2	11	96	4	63	47	0	36	16	1.47
13427420--13427557	51	2.7	52	80	5	165	46	1	23	28	1.61
13428031--13428055	3	8.3	3	100	0	50	68	0	0	32	0.90
13434869--13435034	86	1.9	87	96	1	307	63	7	4	24	1.39
13437734--13437771	16	2.4	16	86	8	51	47	5	23	23	1.72
13437920--13437999	22	3.6	22	68	15	58	51	1	2	45	1.22
13437971--13438028	28	2.1	28	87	3	82	56	0	0	43	0.99
13438072--13438130	29	2.1	28	87	6	84	49	5	10	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13440810--13441630	52	15.8	52	99	0	1624	40	26	7	24	1.82
13447932--13447961	15	1.9	16	93	6	53	53	0	0	46	1.00
13450919--13451011	48	2.0	48	89	6	145	34	21	25	18	1.96
13452102--13452167	24	2.8	24	73	13	64	54	1	4	39	1.30
13461976--13462043	34	2.0	35	82	8	86	22	2	8	66	1.33
13462047--13462093	17	2.8	16	83	6	58	34	0	2	63	1.06
13462051--13462092	17	2.6	16	85	10	59	35	0	2	61	1.09
13463074--13463117	18	2.4	19	81	14	56	20	2	11	65	1.35
13480390--13480437	8	5.6	9	85	12	57	22	2	6	68	1.23
13480389--13480438	17	3.0	16	83	16	66	24	2	6	68	1.23
13485051--13485095	24	1.9	23	86	4	63	53	26	0	20	1.46
13494159--13494223	23	2.8	24	77	11	73	61	1	0	36	1.05
13495114--13495214	45	2.2	45	96	0	184	39	20	22	16	1.92
13495074--13495322	45	5.5	45	78	8	166	40	18	20	20	1.92
13495154--13495364	90	2.3	89	79	4	228	38	18	21	22	1.93
13495201--13495364	45	3.6	45	83	8	192	37	17	21	23	1.93
13495338--13495482	46	3.2	46	79	6	143	44	11	20	22	1.84
13496299--13496349	23	2.2	23	79	6	59	21	1	31	45	1.63
13497342--13497613	136	2.0	136	91	1	447	28	20	15	36	1.92
13510195--13510236	15	2.7	15	82	17	59	0	28	0	71	0.86
13510247--13510294	15	3.1	15	79	5	51	14	18	2	64	1.38
13513443--13513502	25	2.3	26	88	5	95	26	25	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522110--13522152	22	2.0	22	81	9	52	48	4	0	46	1.22
13529125--13529211	42	2.1	42	93	0	147	31	8	14	45	1.74
13530012--13530049	20	1.9	20	84	10	51	60	2	2	34	1.24
13535848--13535962	42	2.8	42	84	6	146	19	20	15	44	1.87
13541645--13541785	33	4.2	33	87	2	185	17	9	34	38	1.83
13542800--13542828	6	5.0	6	95	4	51	13	17	51	17	1.76
13543070--13543346	94	3.0	93	84	2	385	21	13	24	40	1.90
13544718--13544755	16	2.3	17	90	4	60	39	0	2	57	1.12
13545359--13545396	16	2.3	17	90	4	60	39	0	2	57	1.12
13544648--13545931	641	2.0	642	99	0	2552	35	12	15	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145