genome.fa.s13.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  111  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37092164--37092237	30	2.5	30	81	0	94	52	14	4	28	1.60
37094681--37094726	3	15.3	3	100	0	92	32	34	0	32	1.58
37097213--37097270	19	2.9	20	68	25	50	18	10	6	63	1.47
37104120--37104330	105	2.0	105	98	0	404	36	8	17	38	1.80
37104911--37105110	99	2.0	100	99	0	393	39	8	9	44	1.66
37107894--37107942	22	2.1	24	82	14	59	55	2	8	34	1.41
37109821--37109855	18	2.0	18	88	5	54	25	2	2	68	1.17
37109872--37109911	21	1.9	21	84	0	53	37	2	2	57	1.26
37113560--37113586	4	6.8	4	100	0	54	77	0	0	22	0.76
37114656--37115387	89	8.2	89	91	0	1169	33	16	23	26	1.95
37114656--37115387	178	4.1	178	99	0	1428	33	16	23	26	1.95
37115365--37115472	44	2.5	43	80	7	137	32	16	27	23	1.96
37116916--37116965	3	17.0	3	78	12	50	36	4	0	60	1.16
37116916--37116965	16	3.0	17	74	14	59	36	4	0	60	1.16
37116916--37116965	19	2.6	19	75	9	57	36	4	0	60	1.16
37118309--37118353	23	2.0	23	86	0	63	55	6	6	31	1.52
37120063--37120184	44	2.8	44	86	2	156	29	21	19	29	1.98
37120175--37121021	44	19.4	45	77	8	646	30	24	14	30	1.94
37120189--37121016	88	9.5	88	80	5	737	30	24	14	30	1.94
37120719--37120972	82	3.0	82	76	12	246	30	25	14	28	1.95
37120170--37121017	132	6.5	132	82	4	795	30	24	14	30	1.95
37130033--37130067	18	1.9	18	88	11	54	22	20	0	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37130147--37130215	36	1.9	36	87	0	102	7	21	4	66	1.34
37130184--37130225	22	2.0	21	85	4	57	7	23	2	66	1.28
37137485--37137515	15	2.1	15	93	0	53	19	19	29	32	1.96
37139879--37139927	25	2.0	25	83	0	62	30	6	6	57	1.48
37139971--37140038	25	2.6	27	69	9	68	38	4	2	54	1.36
37147680--37147705	5	5.2	5	100	0	52	19	0	0	80	0.71
37161759--37161828	23	3.0	24	75	10	72	50	2	0	47	1.16
37169068--37169102	7	5.0	7	100	0	70	57	0	0	42	0.99
37180957--37180990	2	17.0	2	100	0	68	0	50	0	50	1.00
37198764--37198835	35	2.1	35	100	0	144	44	8	11	36	1.70
37199837--37200079	4	60.8	4	100	0	486	25	0	25	49	1.50
37201807--37201855	23	2.0	23	84	7	62	57	6	8	28	1.52
37202731--37202757	7	3.9	7	100	0	54	14	40	14	29	1.86
37205202--37205235	16	2.1	16	94	0	59	29	20	5	44	1.75
37209252--37209448	98	2.0	98	91	0	322	28	10	22	38	1.87
37221278--37221396	45	2.6	45	79	12	136	27	21	25	26	1.99
37221476--37221811	44	7.7	44	70	11	190	30	20	21	27	1.98
37221477--37221763	89	3.3	88	71	7	262	29	21	21	26	1.99
37221409--37221942	173	3.1	172	85	4	700	29	20	21	28	1.98
37226337--37226362	6	4.3	6	100	0	52	84	0	0	15	0.62
37226648--37226696	20	2.4	20	77	12	55	57	0	0	42	0.99
37226689--37226754	20	3.4	18	73	24	55	62	3	7	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37226922--37226958	18	2.0	19	85	15	51	21	5	2	70	1.20
37227417--37227458	19	2.2	19	83	8	50	52	7	28	11	1.64
37231382--37231427	16	2.9	16	83	6	58	43	0	4	52	1.21
37232531--37232581	26	1.9	27	88	4	77	64	0	1	33	1.05
37232549--37232609	19	3.2	19	79	6	61	63	4	1	29	1.24
37236932--37236956	11	2.3	11	100	0	50	52	0	12	36	1.39
37237872--37237910	19	2.1	19	85	9	53	38	0	2	58	1.12
37243580--37243689	40	2.7	40	83	6	134	28	30	24	17	1.97
37246244--37246277	14	2.4	14	95	0	59	50	11	20	17	1.77
37248141--37248188	24	2.0	24	91	0	78	31	27	18	22	1.97
37248102--37248252	64	2.4	63	87	1	212	29	27	19	23	1.98
37248215--37248273	24	2.5	24	94	0	100	28	30	20	20	1.97
37248359--37248460	42	2.5	42	83	4	127	37	14	14	33	1.87
37248386--37248468	42	2.0	42	90	0	130	38	16	13	31	1.87
37250969--37251005	17	2.2	17	90	4	58	64	27	0	8	1.21
37255708--37255763	7	8.0	7	75	13	53	37	1	0	60	1.07
37255708--37255763	22	2.6	21	80	5	76	37	1	0	60	1.07
37256445--37256508	24	2.7	24	87	4	85	35	4	12	46	1.62
37259578--37259630	26	2.0	26	100	0	106	41	11	18	28	1.85
37260891--37260942	24	2.2	24	89	0	77	36	5	7	50	1.55
37260902--37260954	24	2.2	24	86	6	72	37	5	11	45	1.64
37268247--37268273	12	2.2	12	100	0	54	48	7	0	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37270060--37270099	16	2.6	15	84	7	53	5	12	15	67	1.38
37270049--37270099	21	2.5	21	75	15	52	3	15	15	64	1.43
37279769--37279797	5	5.8	5	100	0	58	0	17	0	82	0.66
37281325--37281476	40	3.8	40	76	9	141	33	24	19	22	1.97
37287924--37288011	43	2.0	43	95	0	158	19	17	32	30	1.94
37288057--37288098	22	1.9	22	95	0	75	40	28	21	9	1.84
37290602--37290663	26	2.4	26	83	5	81	43	14	11	30	1.80
37291027--37291069	19	2.3	19	95	0	77	46	6	9	37	1.63
37292900--37292943	23	1.9	23	95	0	79	25	27	13	34	1.93
37296612--37296778	91	1.8	90	92	1	280	36	13	19	29	1.91
37327686--37327753	21	3.2	21	78	0	82	19	23	14	42	1.88
37327675--37327795	42	2.9	42	83	0	134	20	26	14	38	1.91
37329960--37329989	15	1.9	16	93	6	53	20	0	0	80	0.72
37331679--37331748	26	2.7	26	79	0	86	24	32	22	20	1.97
37335319--37335361	19	2.3	19	84	8	52	65	0	2	32	1.06
37335881--37336150	135	2.0	135	98	0	522	33	23	13	29	1.93
37338995--37339032	16	2.2	18	86	9	53	68	0	2	28	1.03
37343263--37343292	15	2.0	15	100	0	60	26	13	20	40	1.89
37343740--37343947	91	2.3	91	89	0	319	29	22	14	33	1.93
37350042--37350079	16	2.4	16	90	0	58	39	2	31	26	1.70
37350061--37350153	44	2.1	44	92	6	152	31	4	30	34	1.77
37355746--37355789	23	1.9	23	86	9	63	36	18	22	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37367949--37368010	18	3.4	18	81	16	67	29	0	0	70	0.87
37367958--37367993	14	2.5	14	90	4	54	30	0	0	69	0.89
37367951--37368010	15	3.9	14	73	26	50	30	0	0	70	0.88
37367948--37367996	18	2.5	21	83	9	68	28	0	0	71	0.86
37371733--37371769	16	2.2	18	85	9	51	67	0	2	29	1.04
37372091--37372115	13	1.9	13	100	0	50	64	12	0	24	1.27
37375751--37375794	23	1.9	23	86	9	63	54	27	0	18	1.44
37378900--37378966	32	2.1	32	100	0	134	43	13	17	25	1.86
37380383--37380481	37	2.7	37	71	14	96	41	2	3	53	1.28
37387635--37387687	22	2.4	22	84	12	65	35	11	20	32	1.88
37400638--37400662	1	25.0	1	100	0	50	0	0	0	100	0.00
37405918--37405979	29	2.1	29	85	11	83	56	19	6	17	1.62
37406977--37407003	5	5.4	5	100	0	54	62	0	0	37	0.95
37407187--37407213	5	5.4	5	100	0	54	62	0	0	37	0.95
37406900--37407321	210	2.0	211	99	0	837	36	10	16	36	1.83
37419090--37419114	9	2.8	9	100	0	50	12	0	20	68	1.21
37420290--37420490	41	4.9	41	87	0	258	27	18	25	27	1.98
37430536--37430573	19	2.0	19	89	0	58	47	10	10	31	1.72
37434245--37434412	91	1.9	90	91	1	273	35	14	20	29	1.92
37437799--37437867	19	3.5	20	72	20	65	30	17	15	36	1.91
37440563--37440784	106	2.1	107	87	5	315	45	19	15	19	1.86
37440563--37440784	27	8.3	27	83	4	270	45	19	15	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37448832--37448864	11	3.1	11	82	8	50	60	12	18	9	1.57
37457613--37457654	16	2.6	16	85	11	50	26	2	0	71	0.98
37459780--37459839	21	2.9	21	77	18	63	40	1	1	56	1.19
37462403--37462431	15	1.9	15	100	0	58	27	62	0	10	1.28
37470964--37471018	21	2.6	21	85	0	74	32	36	7	23	1.82
37474387--37474430	24	1.9	23	86	9	63	38	9	0	52	1.33
37477804--37477861	25	2.4	24	85	5	80	43	17	20	18	1.89
37480518--37480638	20	5.9	21	75	13	108	65	9	8	16	1.46
37480484--37480649	42	4.0	42	86	5	219	63	10	7	17	1.49
37480484--37480640	83	1.9	83	88	2	235	63	11	7	17	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145