genome.fa.s13.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  144  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47546689--47546749	31	2.0	29	84	12	79	29	3	6	60	1.38
47547542--47547579	2	19.0	2	94	0	67	50	2	0	47	1.15
47551625--47551652	2	14.0	2	100	0	56	50	0	0	50	1.00
47553884--47553916	2	16.5	2	100	0	66	48	0	0	51	1.00
47554749--47554784	11	3.2	11	88	7	54	19	0	0	80	0.71
47554749--47554778	6	5.2	6	96	4	53	16	0	0	83	0.65
47556268--47556293	7	3.7	7	100	0	52	57	0	0	42	0.98
47557892--47557917	7	3.7	7	100	0	52	57	0	0	42	0.98
47558554--47558591	11	3.7	11	83	16	55	63	0	0	36	0.95
47559052--47559082	2	15.5	2	100	0	62	51	0	0	48	1.00
47559687--47559725	18	2.2	18	95	0	69	23	0	12	64	1.28
47571173--47571223	22	2.4	21	81	9	59	29	23	1	45	1.64
47571414--47571517	37	2.7	40	79	5	115	32	23	17	26	1.96
47574190--47574245	26	2.3	23	79	14	60	48	3	3	44	1.37
47576136--47576169	17	1.9	18	94	5	61	58	0	5	35	1.22
47579925--47579960	16	2.2	16	95	0	63	38	33	0	27	1.57
47585586--47585625	21	1.9	21	94	0	71	72	15	7	5	1.24
47587530--47587595	30	2.2	31	78	10	75	36	6	6	51	1.51
47589845--47589877	2	16.5	2	100	0	66	51	0	0	48	1.00
47591357--47591419	27	2.4	27	84	7	76	57	1	3	38	1.24
47591392--47591435	21	2.1	21	87	8	63	54	0	4	40	1.21
47593181--47593209	10	2.9	10	100	0	58	93	0	6	0	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47604154--47604219	30	2.2	30	77	17	75	66	3	3	27	1.21
47604172--47604229	28	2.0	29	83	9	75	63	3	5	27	1.31
47606283--47606334	20	2.7	19	80	11	61	30	0	3	65	1.10
47612126--47612155	6	5.0	6	100	0	60	83	0	0	16	0.65
47612564--47612592	15	1.9	15	100	0	58	20	0	20	58	1.39
47612567--47612600	15	2.3	15	89	0	50	23	0	23	52	1.47
47615694--47615723	5	6.0	5	100	0	60	80	0	20	0	0.72
47621522--47621581	31	1.9	31	83	6	77	40	10	21	28	1.85
47621716--47621754	18	2.1	20	86	13	57	41	0	0	58	0.98
47621713--47621757	17	2.5	19	79	20	60	44	0	0	55	0.99
47622595--47624429	996	1.8	996	99	0	3654	30	20	18	30	1.97
47631796--47631843	25	1.9	25	100	0	96	62	4	16	16	1.48
47641202--47641247	20	2.4	19	81	3	56	58	2	2	36	1.22
47642649--47642687	13	2.9	13	85	7	51	51	0	2	46	1.14
47647754--47648052	99	3.0	99	99	0	589	31	14	30	24	1.94
47657695--47657735	21	2.0	21	85	0	55	53	4	26	14	1.61
47683729--47683904	85	2.0	86	97	2	336	35	5	11	48	1.61
47686268--47686314	3	15.7	3	79	16	53	29	6	0	63	1.19
47686267--47686314	18	2.6	19	90	6	73	29	8	0	62	1.24
47686471--47686509	20	1.9	20	94	5	69	25	0	0	74	0.82
47686468--47686510	12	3.6	12	82	17	54	25	0	0	74	0.82
47693352--47693403	26	2.0	26	88	0	77	44	9	15	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47697572--47697683	27	4.0	27	90	8	163	42	0	0	57	0.99
47697587--47697667	10	8.5	10	77	16	84	45	0	0	54	0.99
47697597--47697658	17	4.1	17	71	26	66	45	0	0	54	0.99
47697653--47697708	22	2.6	22	83	13	64	44	0	1	53	1.11
47707798--47709379	128	12.4	128	100	0	3164	47	11	10	29	1.74
47709957--47709985	2	14.5	2	100	0	58	48	0	0	51	1.00
47713040--47713094	24	2.3	24	87	0	74	18	27	20	34	1.95
47715132--47715172	21	2.0	21	85	9	57	26	19	17	36	1.94
47715810--47715836	6	4.5	6	100	0	54	18	14	0	66	1.25
47717968--47718028	23	2.8	21	76	11	61	16	19	22	40	1.90
47723079--47723125	12	3.4	14	82	14	53	46	2	4	46	1.34
47723141--47723182	10	3.9	11	76	17	52	45	0	0	54	0.99
47723141--47723185	16	2.8	16	83	6	56	46	0	0	53	1.00
47724597--47724622	2	13.0	2	100	0	52	50	0	0	50	1.00
47730964--47731004	17	2.3	19	80	16	52	43	7	4	43	1.53
47731190--47731230	15	2.7	16	77	11	50	48	0	2	48	1.14
47731910--47732076	83	2.0	83	91	0	271	47	17	12	22	1.81
47732103--47732149	22	2.1	22	84	0	58	51	23	6	19	1.70
47742213--47742265	15	3.5	15	75	10	54	32	0	1	66	1.03
47742202--47742244	15	2.8	16	78	7	52	32	0	0	67	0.91
47744512--47744860	171	2.0	171	98	0	680	40	23	5	30	1.78
47747992--47748034	13	3.2	13	90	6	68	23	11	9	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47754224--47754288	27	2.4	27	77	7	71	16	9	9	64	1.48
47754761--47754806	18	2.5	19	82	10	60	60	0	6	32	1.22
47756370--47756407	11	3.5	11	89	10	60	55	2	0	42	1.14
47756638--47756686	18	2.5	21	81	15	61	40	2	0	57	1.10
47757033--47757070	17	2.3	17	90	4	60	65	0	0	34	0.93
47757313--47757350	16	2.3	17	86	4	51	15	0	2	81	0.80
47757352--47757400	18	2.5	21	81	15	61	40	2	0	57	1.10
47756606--47757974	714	1.9	713	99	0	2729	39	8	10	41	1.69
47757747--47757784	17	2.3	17	90	4	60	65	0	0	34	0.93
47758630--47758655	6	4.3	6	100	0	52	30	53	0	15	1.42
47758668--47758720	18	2.9	18	85	0	79	18	47	24	9	1.78
47759593--47759635	19	2.1	22	83	12	56	34	4	4	55	1.41
47775188--47775247	31	1.9	31	83	10	77	53	13	13	20	1.72
47776993--47777020	5	5.6	5	100	0	56	78	0	0	21	0.75
47779934--47780818	442	2.0	443	99	0	1763	33	13	11	42	1.80
47787930--47788020	44	2.1	44	87	4	130	36	10	6	46	1.65
47795141--47795165	6	4.2	6	100	0	50	32	0	36	32	1.58
47796819--47797291	234	2.0	235	99	0	939	45	5	7	41	1.56
47798436--47798488	16	3.3	16	71	10	54	18	28	0	52	1.46
47800418--47800475	26	2.2	26	84	0	71	25	17	17	39	1.91
47812755--47812816	26	2.4	26	78	5	72	41	3	3	51	1.34
47812942--47812982	13	2.9	14	82	17	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47813141--47813183	22	2.0	22	90	0	68	30	2	11	55	1.48
47814173--47814225	23	2.3	23	81	9	65	49	15	9	26	1.74
47815965--47816006	21	2.0	21	100	0	84	19	23	4	52	1.65
47841323--47841361	13	2.8	13	88	7	51	33	0	0	66	0.92
47842667--47842894	84	2.7	82	81	4	260	39	14	16	28	1.89
47844022--47844092	17	4.1	17	72	12	63	29	0	5	64	1.16
47846250--47846319	36	2.0	35	85	2	95	58	8	7	25	1.53
47847926--47847972	15	2.9	16	74	22	53	38	0	10	51	1.37
47848111--47848247	40	3.5	40	71	7	127	27	18	24	30	1.98
47849547--47849594	25	1.9	25	83	8	62	10	12	10	66	1.44
47853522--47853556	18	1.9	18	88	0	52	42	0	25	31	1.55
47854116--47854255	40	3.5	40	77	6	151	27	19	24	29	1.98
47858016--47858040	7	3.6	7	100	0	50	28	12	28	32	1.92
47867529--47867621	32	3.0	31	90	4	134	59	0	1	39	1.05
47867529--47867612	11	7.9	11	78	13	88	57	0	1	41	1.06
47868001--47868075	30	2.6	29	82	6	89	30	17	4	48	1.66
47882700--47882780	41	2.0	41	85	4	110	16	13	20	49	1.79
47887870--47887899	6	5.0	6	91	0	51	53	16	0	30	1.44
47888852--47888877	13	2.0	13	100	0	52	38	7	38	15	1.76
47889247--47889281	17	2.1	17	89	5	54	57	0	0	42	0.99
47892761--47892828	18	3.9	17	75	12	59	32	0	5	61	1.20
47897980--47898621	353	1.8	348	80	5	745	27	14	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47899664--47899742	39	2.0	39	97	0	149	32	11	16	39	1.84
47903935--47904112	44	4.0	44	100	0	356	55	6	15	22	1.64
47908233--47910032	900	2.0	900	99	0	3582	28	20	26	24	1.99
47911423--47911471	25	2.0	25	83	0	62	55	12	10	22	1.66
47915216--47915282	25	2.7	25	90	0	98	31	22	22	23	1.98
47920854--47920896	20	2.2	20	91	0	68	37	13	18	30	1.90
47923995--47924037	20	2.2	20	91	0	68	37	13	18	30	1.90
47924407--47924455	20	2.5	20	93	0	89	20	10	36	32	1.86
47931843--47931914	26	2.7	27	71	14	69	33	4	8	54	1.50
47933566--47933871	152	2.0	152	99	0	603	29	22	18	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145