genome.fa.s13.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  7  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2991707--2992115	85	4.7	85	77	11	310	25	20	20	33	1.97
2991706--2991946	42	5.7	42	84	5	258	26	22	19	30	1.98
2991963--2992115	42	3.5	42	85	4	198	24	18	20	35	1.96
2991825--2992085	139	1.9	138	91	0	423	24	19	19	36	1.94
3004149--3004260	42	2.7	42	87	2	163	18	17	31	32	1.95
3004159--3004289	42	3.1	42	84	4	113	19	18	29	32	1.96
3009121--3009162	21	2.0	20	86	4	57	54	2	16	26	1.54
3012159--3012344	91	2.0	92	98	1	365	38	9	15	37	1.79
3013493--3013537	22	2.0	24	82	8	58	40	2	2	55	1.24
3017414--3017525	33	3.4	33	96	0	197	48	9	15	26	1.76
3022319--3022688	184	2.0	185	99	0	733	43	7	6	43	1.57
3023873--3023962	29	3.0	29	76	12	85	28	15	6	48	1.70
3036554--3036587	3	11.3	3	87	0	50	0	32	35	32	1.58
3036561--3036589	15	1.9	15	100	0	58	0	31	41	27	1.56
3036604--3036643	15	2.7	15	88	0	53	37	2	55	5	1.35
3036619--3036659	21	2.0	21	90	0	64	39	0	58	2	1.11
3053541--3053731	96	2.0	96	98	0	373	41	4	21	32	1.73
3062274--3063323	210	5.0	210	91	0	1665	30	22	15	31	1.95
3076586--3076655	32	2.2	32	85	7	90	38	10	14	37	1.79
3081882--3082016	48	2.8	48	94	0	225	42	11	9	35	1.74
3084972--3086423	745	2.0	743	88	4	2211	40	15	14	29	1.87
3086967--3087034	30	2.3	31	94	5	122	32	14	2	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3087449--3087522	21	3.5	21	73	14	80	21	13	27	37	1.91
3087441--3087527	42	2.1	42	97	0	165	28	11	27	32	1.91
3092125--3092203	38	2.1	38	97	0	149	46	18	18	15	1.84
3098816--3099202	193	2.0	193	100	0	774	38	14	13	32	1.86
3099871--3100133	23	11.5	23	71	7	140	37	25	5	31	1.78
3099865--3100131	46	5.8	46	76	7	179	37	25	4	31	1.77
3099915--3100133	114	1.9	114	81	7	266	38	25	4	31	1.76
3103492--3104290	23	35.0	23	72	10	420	39	25	4	30	1.76
3103492--3104247	46	16.5	46	76	7	506	38	25	4	31	1.77
3103492--3104305	229	3.6	229	92	1	1292	39	24	4	30	1.77
3115345--3115544	100	2.0	100	100	0	400	31	20	8	41	1.81
3132173--3132235	23	2.8	23	79	9	60	50	0	6	42	1.27
3132292--3132340	22	2.3	21	82	10	55	38	4	8	48	1.52
3139152--3139227	38	2.0	38	87	5	109	39	10	22	27	1.87
3146008--3146032	1	25.0	1	100	0	50	0	0	100	0	0.00
3152976--3153010	17	2.0	18	88	5	54	42	0	5	51	1.25
3153026--3153073	24	2.0	24	83	0	60	29	2	4	64	1.23
3153904--3153958	29	1.9	28	85	10	76	50	7	3	38	1.48
3158186--3158247	29	2.1	29	85	5	81	24	12	3	59	1.48
3166526--3166558	14	2.4	14	90	5	50	57	3	3	36	1.29
3175098--3175129	1	32.0	1	100	0	64	0	0	0	100	0.00
3193073--3193124	23	2.3	21	76	23	52	38	7	3	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3199583--3199630	19	2.4	20	83	13	55	70	6	6	16	1.28
3199582--3199628	21	2.2	21	77	7	51	72	6	6	14	1.25
3202153--3202189	15	2.3	17	86	9	51	40	2	2	54	1.29
3208153--3208217	34	1.9	34	90	0	103	36	9	23	30	1.86
3225955--3226018	33	1.9	33	84	9	85	31	6	6	56	1.49
3232078--3232103	2	13.0	2	100	0	52	50	0	0	50	1.00
3242858--3242928	35	2.0	35	100	0	142	39	22	12	25	1.89
3252012--3252046	18	1.9	18	94	0	61	17	17	37	28	1.92
3252008--3252049	12	3.5	12	83	0	57	16	14	40	28	1.88
3257123--3257167	23	2.0	23	86	8	65	62	4	2	31	1.27
3258309--3258380	36	2.0	36	100	0	144	25	27	22	25	2.00
3260140--3260332	96	2.0	97	98	1	379	40	8	7	43	1.62
3267866--3267901	16	2.1	17	90	10	56	27	11	22	38	1.88
3270256--3270305	25	2.0	25	96	0	91	58	14	4	24	1.53
3270301--3270338	18	2.1	18	95	0	67	28	26	0	44	1.54
3275260--3275814	277	2.0	278	99	0	1103	37	11	13	37	1.81
3280673--3280725	21	2.6	21	72	3	54	47	16	3	32	1.65
3280871--3281028	76	2.1	77	98	1	309	34	10	5	50	1.58
3280907--3281026	38	3.2	38	63	21	97	31	7	5	55	1.52
3282863--3282903	15	2.5	17	80	11	59	65	0	0	34	0.93
3282863--3282925	22	2.8	22	80	4	63	60	1	0	38	1.07
3283870--3283911	14	2.9	14	78	21	50	23	4	21	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3293433--3293470	20	1.9	20	89	10	60	57	5	0	36	1.21
3294692--3294749	29	2.0	29	100	0	116	34	3	20	41	1.69
3306024--3306090	20	3.4	20	76	14	68	34	0	1	64	1.03
3306047--3306088	19	2.3	19	83	4	59	38	0	2	59	1.10
3309425--3309467	18	2.3	18	84	4	50	2	41	0	55	1.12
3320857--3320922	32	2.0	33	82	8	82	53	4	10	31	1.56
3321991--3322061	21	3.2	24	62	22	64	53	4	2	39	1.35
3327858--3327916	10	5.9	10	76	9	50	22	5	3	69	1.23
3333490--3333647	78	2.0	79	98	1	309	41	5	2	50	1.38
3334469--3334535	33	2.0	33	91	5	109	8	25	22	43	1.82
3337766--3337800	17	2.1	17	94	5	63	40	0	5	54	1.24
3358998--3359046	25	2.0	24	84	11	64	44	4	0	51	1.20
3359064--3359121	18	3.1	19	74	18	59	41	3	0	55	1.17
3365383--3365420	20	1.9	20	94	0	67	71	5	7	15	1.28
3367440--3367481	23	1.9	23	85	9	61	40	2	9	47	1.49
3370503--3370576	37	2.2	33	85	11	96	31	12	6	50	1.66
3371173--3371245	32	2.3	31	83	7	92	47	8	15	28	1.73
3371544--3371574	15	2.1	15	93	0	53	35	9	6	48	1.62
3374699--3374734	13	2.8	13	91	0	63	38	8	30	22	1.83
3379047--3379106	27	2.2	27	78	0	66	70	0	1	28	0.97
3379061--3379104	21	2.2	20	91	4	70	77	0	0	22	0.77
3379564--3379595	14	2.3	14	94	0	55	50	9	21	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3380079--3380119	21	2.0	20	90	4	64	34	21	21	21	1.97
3382371--3382420	21	2.4	20	80	9	55	32	2	4	62	1.25
3383280--3383321	13	3.3	13	78	18	52	59	0	2	38	1.10
3384420--3384670	125	2.0	125	100	0	502	27	6	15	49	1.69
3385475--3385515	21	2.0	21	85	4	57	63	12	4	19	1.46
3386412--3386447	3	12.0	3	100	0	72	66	0	0	33	0.92
3388170--3388209	17	2.4	17	95	0	71	70	0	0	30	0.88
3388517--3388553	11	3.5	11	82	14	51	48	0	0	51	1.00
3394956--3394999	23	1.9	23	90	0	70	27	6	22	43	1.78
3397220--3397287	31	2.3	31	84	5	95	17	16	13	52	1.74
3401748--3401856	54	2.0	55	98	1	211	29	11	20	39	1.86
3412791--3412819	5	6.0	5	92	8	51	0	17	0	82	0.66
3425239--3425264	13	2.0	13	100	0	52	61	0	0	38	0.96
3428405--3428474	28	2.5	29	79	9	83	57	0	1	41	1.08
3443045--3443108	3	21.3	3	85	6	85	62	1	4	31	1.25
3444521--3444561	3	14.0	3	84	5	57	31	0	2	65	1.05
3444527--3444570	20	2.2	20	83	0	52	31	4	2	61	1.28
3445658--3445684	13	2.1	13	100	0	54	70	0	14	14	1.17
3454523--3454562	16	2.5	17	84	11	50	55	35	5	5	1.44
3455756--3455801	17	2.7	17	83	6	58	30	0	0	69	0.89
3458203--3458268	34	2.0	32	85	5	87	40	1	4	53	1.31
3458779--3458810	3	10.7	3	93	0	55	0	37	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3473415--3473573	78	2.0	78	95	0	282	35	19	13	32	1.90
3482445--3482530	2	43.0	2	81	4	75	43	3	3	50	1.36
3482441--3482550	56	2.0	56	91	3	179	40	4	6	49	1.49
3482553--3482711	47	3.3	47	92	4	248	32	8	11	48	1.68
3482635--3482664	14	2.1	15	93	6	53	43	0	13	43	1.43
3482682--3482711	14	2.1	15	93	6	53	43	0	13	43	1.43
3483208--3483245	15	2.4	16	86	4	51	73	0	0	26	0.83
3485951--3485991	19	2.2	19	86	4	57	36	2	4	56	1.34
3485936--3485992	18	3.1	18	78	19	55	38	1	5	54	1.33
3494791--3494854	31	2.1	31	100	0	128	40	18	28	12	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145