genome.fa.s13.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  108  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36351199--36351799	102	5.6	107	73	15	427	58	14	0	25	1.43
36351294--36351799	102	4.8	102	83	8	601	58	14	1	25	1.44
36351404--36351799	111	3.7	109	85	5	545	58	14	1	25	1.44
36351209--36351799	213	2.8	214	88	3	858	58	14	1	26	1.43
36351817--36351973	57	2.8	57	81	0	179	37	21	13	28	1.91
36352661--36352706	21	2.3	19	85	7	56	52	0	0	47	1.00
36352661--36352712	16	3.0	17	86	8	61	46	0	0	53	1.00
36361792--36362000	102	2.0	103	99	0	411	19	20	16	43	1.88
36364037--36364061	11	2.3	11	100	0	50	44	8	8	40	1.63
36364693--36364737	23	2.0	23	90	0	72	28	20	15	35	1.93
36368379--36368470	46	2.0	46	97	0	175	30	27	13	29	1.94
36377375--36377418	21	2.0	22	82	4	54	20	22	11	45	1.83
36391650--36391675	7	3.7	7	100	0	52	61	0	0	38	0.96
36393011--36393195	101	1.8	102	89	3	293	23	17	27	31	1.97
36393011--36393195	51	3.6	51	79	5	178	23	17	27	31	1.97
36393207--36393292	45	1.9	45	92	0	145	25	17	23	33	1.96
36393334--36393380	23	2.0	22	84	15	60	42	0	21	36	1.53
36398287--36398325	19	2.1	19	85	0	51	25	5	7	61	1.44
36405888--36406153	142	1.9	142	85	3	374	41	19	14	24	1.89
36411472--36411554	27	3.4	23	70	16	60	45	4	1	48	1.31
36413839--36413977	61	2.3	61	76	14	133	39	5	15	40	1.69
36416473--36416667	90	2.2	91	89	1	295	27	6	14	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36416473--36416702	90	2.6	89	85	6	267	26	5	14	53	1.62
36419218--36419275	25	2.5	22	83	10	71	27	10	0	62	1.28
36419264--36419304	14	2.8	15	88	3	57	21	7	2	68	1.26
36419350--36419411	11	6.4	11	69	27	50	29	17	0	53	1.44
36419363--36419456	28	3.4	28	86	5	136	29	14	2	53	1.53
36419342--36419411	5	13.4	5	73	19	54	27	18	0	54	1.44
36419531--36419586	17	2.9	19	80	20	64	23	14	0	62	1.31
36419836--36419882	5	8.6	5	86	13	58	17	23	0	59	1.37
36419839--36419882	17	2.6	17	96	0	79	18	25	0	56	1.41
36419836--36419882	11	4.3	10	87	12	58	17	23	0	59	1.37
36419901--36419976	21	3.3	21	72	19	71	26	13	0	60	1.33
36419908--36420002	27	3.8	25	72	18	72	24	13	1	61	1.39
36419869--36420010	48	3.1	47	84	8	168	22	14	0	62	1.36
36420048--36420117	22	3.2	22	67	15	63	35	1	12	50	1.50
36420043--36420190	44	3.4	44	88	0	224	35	3	11	50	1.55
36423345--36423483	62	2.2	63	89	1	217	33	21	22	23	1.98
36426208--36426255	1	48.0	1	95	0	78	4	0	0	95	0.25
36430006--36430036	14	2.2	14	94	0	53	38	0	3	58	1.15
36430914--36430971	25	2.3	25	81	0	71	44	1	5	48	1.35
36431182--36431243	29	2.0	32	81	9	76	51	9	0	38	1.35
36432144--36432182	20	1.9	21	85	15	55	56	5	0	38	1.22
36432762--36432803	22	1.9	22	85	0	57	9	9	9	71	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36434229--36434300	29	2.5	29	86	0	90	18	23	37	20	1.94
36434558--36434596	15	2.6	15	91	0	60	41	35	7	15	1.76
36437800--36437853	18	2.8	19	77	11	56	9	7	7	75	1.18
36437797--36437844	17	2.7	18	83	6	62	12	8	4	75	1.18
36438763--36438801	17	2.3	17	86	0	51	28	5	0	66	1.12
36439023--36439065	18	2.2	20	84	8	54	18	18	6	55	1.64
36444095--36444249	50	3.1	49	70	5	132	34	21	18	25	1.96
36444343--36445083	45	16.4	45	87	5	1034	29	17	23	30	1.97
36445174--36445268	49	1.9	50	84	2	129	32	22	16	28	1.96
36445289--36445657	44	8.6	43	74	9	267	30	23	21	25	1.99
36445417--36445619	85	2.3	89	80	6	229	30	22	20	26	1.98
36445283--36445657	129	2.9	128	92	1	608	30	24	20	25	1.99
36449847--36449911	34	1.9	34	90	0	103	29	4	16	49	1.66
36457932--36457960	7	4.3	7	91	8	51	68	0	13	17	1.20
36457932--36457958	13	2.1	13	100	0	54	70	0	14	14	1.17
36459336--36459607	142	1.9	142	91	0	445	33	18	20	27	1.96
36459685--36460163	50	9.6	50	68	5	205	33	22	18	24	1.97
36459654--36460208	100	5.6	99	79	7	516	32	22	19	25	1.97
36460033--36460212	50	3.6	50	70	8	159	33	24	18	22	1.97
36466536--36466847	155	2.0	156	98	1	608	41	13	7	37	1.72
36467306--36467345	21	1.9	21	84	0	53	12	20	0	67	1.22
36467304--36467351	21	2.3	21	74	0	51	10	18	0	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36468689--36468718	3	10.0	3	100	0	60	0	33	0	66	0.92
36470346--36470373	2	14.0	2	100	0	56	0	50	0	50	1.00
36475221--36475271	19	2.6	19	78	9	59	29	17	19	33	1.95
36477042--36477178	73	1.9	72	80	7	161	33	21	24	20	1.97
36479466--36479565	42	2.4	42	91	0	155	22	31	26	21	1.98
36480947--36481450	252	2.0	252	96	0	927	35	19	8	36	1.82
36481457--36481595	25	5.6	25	73	10	99	35	20	24	20	1.96
36481448--36481594	73	2.0	74	83	9	185	35	19	24	20	1.96
36481580--36481645	25	2.6	24	76	9	69	36	25	22	15	1.93
36485003--36485083	33	2.5	33	86	8	87	44	9	4	40	1.59
36485021--36485086	33	2.0	33	100	0	132	48	9	3	39	1.50
36485145--36485179	18	2.0	18	94	5	63	31	0	0	68	0.90
36490325--36490404	3	25.7	3	79	5	79	27	2	5	65	1.27
36494856--36494899	13	3.3	13	87	3	52	81	0	9	9	0.87
36494855--36494901	14	3.4	14	80	14	53	80	0	8	10	0.89
36494852--36494893	21	2.0	21	85	0	57	80	0	7	11	0.88
36495787--36496040	44	5.5	45	69	12	129	27	21	22	28	1.99
36495777--36496110	143	2.3	142	88	1	499	30	19	21	28	1.98
36496034--36496164	54	2.4	54	86	5	167	32	13	22	31	1.93
36495892--36496307	197	2.1	197	90	2	649	31	19	21	27	1.97
36495787--36496450	340	2.0	339	88	2	1001	30	19	21	28	1.98
36496088--36496522	143	3.0	143	89	2	676	30	20	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36496467--36496665	44	4.5	44	70	7	134	29	18	26	26	1.98
36496467--36496749	133	2.1	133	86	1	388	29	18	26	26	1.98
36496741--36496809	28	2.5	28	90	0	102	36	15	33	14	1.89
36498194--36498230	3	12.3	3	88	0	56	32	5	0	62	1.18
36498349--36498414	30	2.1	34	86	11	95	18	7	0	74	1.05
36498348--36498403	6	8.7	6	76	18	51	17	5	0	76	0.96
36498662--36498694	15	2.2	15	94	0	57	39	6	15	39	1.72
36505840--36505887	24	2.0	25	83	4	62	50	6	14	29	1.67
36506943--36506997	16	3.4	16	75	9	58	47	1	32	18	1.59
36507758--36507799	18	2.4	17	81	14	50	16	14	0	69	1.20
36512501--36512547	11	4.4	11	89	7	62	23	36	2	38	1.67
36514156--36514198	18	2.4	18	84	7	52	18	25	9	46	1.79
36517719--36517761	18	2.4	18	84	7	52	18	25	9	46	1.79
36521415--36521955	126	4.3	126	87	0	760	27	19	18	34	1.95
36522043--36522192	46	3.2	46	68	20	128	40	18	1	40	1.59
36521992--36522331	96	3.5	96	83	4	396	39	19	2	38	1.65
36522052--36522202	48	3.1	48	67	20	134	39	17	1	41	1.58
36522335--36522381	14	3.3	14	79	8	51	55	34	0	10	1.35
36528536--36528586	24	2.1	24	88	0	75	37	3	9	49	1.55
36532261--36532336	24	3.4	22	80	12	75	42	14	23	19	1.88
36535773--36535809	17	2.2	16	90	4	56	75	2	5	16	1.10
36535773--36535809	16	2.2	17	86	13	51	75	2	5	16	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36539141--36539183	22	2.0	22	90	0	68	9	18	27	44	1.80
36539255--36539440	43	4.4	42	85	4	230	31	20	23	24	1.98
36539272--36539440	85	2.0	85	84	4	225	33	20	23	23	1.97
36539883--36539951	21	3.3	21	91	0	102	1	42	20	36	1.61
36544799--36544855	26	2.2	26	93	0	96	40	3	17	38	1.67
36545939--36545982	24	1.9	22	90	9	70	20	0	43	36	1.52
36547206--36547331	22	5.6	22	74	12	105	35	44	0	19	1.51
36547206--36547308	7	13.9	7	76	11	80	34	46	0	18	1.49
36547206--36547353	7	20.3	7	70	18	52	35	44	0	20	1.52
36547206--36547353	14	10.1	14	72	17	88	35	44	0	20	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145