genome.fa.s13.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  2  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580689--580764	12	6.1	12	76	11	55	13	46	3	36	1.61
580700--580764	6	10.3	6	77	9	67	13	46	3	36	1.60
588856--588905	1	50.0	1	91	0	64	4	4	0	92	0.48
589538--589570	12	2.8	12	86	13	50	54	0	3	42	1.15
589529--589629	11	9.9	11	67	25	53	57	0	2	39	1.14
589554--589595	18	2.4	18	96	4	77	59	0	2	38	1.10
589529--589637	30	3.6	30	78	9	132	58	0	2	38	1.12
595184--595228	23	2.0	23	86	4	65	73	0	4	22	1.01
595196--595226	15	2.1	15	93	0	53	77	0	3	19	0.90
595275--595320	18	2.5	18	83	13	58	28	4	6	60	1.40
599650--599683	13	2.5	14	85	9	52	44	0	29	26	1.55
600897--600992	48	2.0	48	95	0	174	31	15	9	43	1.78
607671--608019	84	4.2	83	85	6	372	17	30	8	42	1.80
613269--613323	25	2.2	25	83	6	67	27	9	7	56	1.57
613440--613481	20	2.2	18	87	12	57	16	0	7	76	1.00
617983--618009	7	3.9	7	100	0	54	40	0	0	59	0.98
638781--638843	33	1.9	32	84	12	83	33	6	3	57	1.40
642713--642785	30	2.4	30	81	2	83	35	10	10	42	1.75
644453--644671	120	1.8	122	85	5	309	36	19	13	30	1.90
649287--649468	63	3.0	63	88	4	241	50	21	25	2	1.62
649287--649468	30	6.0	30	88	3	247	50	21	25	2	1.62
649300--649468	93	1.8	93	89	0	266	50	20	26	2	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667165--667291	57	2.2	58	83	4	150	52	12	12	22	1.72
667476--667596	29	4.5	28	69	18	112	70	0	0	28	0.99
667489--667591	52	2.0	52	83	5	129	71	0	0	26	0.98
674622--674648	6	4.5	6	100	0	54	14	37	29	18	1.91
702380--702414	2	17.5	2	93	0	61	48	2	0	48	1.16
702406--702675	137	2.0	137	83	4	339	31	16	12	38	1.86
711614--712325	182	3.9	181	80	6	789	35	20	11	33	1.88
718186--718250	4	16.5	4	76	20	66	49	26	0	24	1.51
721380--721443	24	2.7	24	92	0	101	40	6	3	50	1.43
735704--735733	15	2.0	15	93	0	51	70	0	0	30	0.88
738743--738771	12	2.5	12	94	5	51	44	0	0	55	0.99
739565--739604	20	2.0	20	85	9	55	42	2	7	47	1.45
739553--739632	19	4.2	19	72	12	56	42	1	6	50	1.35
741292--741732	124	3.5	124	81	5	512	31	16	22	29	1.96
742401--743034	22	26.9	21	71	18	282	23	1	32	42	1.61
742495--742798	49	6.1	49	80	11	341	21	0	35	42	1.58
742401--742639	43	5.5	42	78	12	196	24	2	31	41	1.68
742642--742712	14	5.1	14	65	21	51	21	0	32	46	1.51
742472--742899	92	4.4	97	80	11	369	22	1	34	42	1.62
742635--742967	76	4.4	76	77	12	339	22	0	34	43	1.56
742612--742963	49	6.9	49	83	10	299	22	0	33	43	1.58
742789--742883	27	3.7	28	71	21	91	23	1	34	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742738--742963	97	2.3	100	85	6	300	23	0	33	42	1.58
742880--742925	7	6.3	7	83	16	58	26	0	26	47	1.52
742878--742947	29	2.4	29	83	7	88	22	0	32	44	1.53
742910--743034	43	2.9	43	83	5	171	24	0	31	44	1.54
743288--743334	21	2.2	21	85	7	60	6	21	36	36	1.79
743587--743633	18	2.6	18	96	0	85	42	6	31	19	1.76
744722--744801	39	2.1	39	100	0	160	41	8	10	40	1.70
744923--744960	20	1.9	20	84	10	51	55	7	2	34	1.43
745854--745911	30	1.9	30	82	6	73	55	0	1	43	1.10
745904--745933	11	2.6	11	94	5	51	53	0	20	26	1.46
745924--746025	11	9.6	11	72	16	90	46	0	31	21	1.58
745961--746025	33	2.0	33	90	6	105	46	0	33	20	1.51
745977--746034	22	2.6	22	91	2	89	46	0	34	18	1.50
751278--751448	80	2.1	79	80	10	179	51	4	5	38	1.47
752339--752494	77	2.0	77	97	0	294	19	17	25	37	1.94
763878--763905	3	9.3	3	100	0	56	32	0	0	67	0.91
769197--769271	36	2.1	36	94	0	132	28	17	14	40	1.89
771358--771407	22	2.2	22	82	10	57	44	8	0	48	1.32
775266--775299	14	2.4	14	100	0	68	44	14	11	29	1.81
775610--775656	14	3.4	14	82	8	53	80	2	12	4	0.94
775991--776066	36	2.1	36	95	0	134	27	7	10	53	1.62
788728--788766	2	19.5	2	94	0	69	2	0	48	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797091--797115	5	5.0	5	100	0	50	20	0	0	80	0.72
805573--805862	142	2.0	142	93	0	499	28	10	18	42	1.83
813055--813127	18	4.1	18	70	18	62	34	1	5	58	1.29
817953--818001	25	2.0	25	88	8	73	32	18	20	28	1.96
818075--818199	43	2.9	42	89	4	196	31	16	0	51	1.51
819732--819768	16	2.3	16	90	9	58	40	0	10	48	1.38
849658--850121	230	2.0	231	99	0	912	39	13	15	31	1.87
854750--854793	20	2.3	20	84	7	56	31	0	6	61	1.22
855723--855782	31	1.9	31	86	0	84	20	13	11	55	1.69
856224--856251	14	2.0	14	100	0	56	35	0	28	35	1.58
865314--865499	89	2.1	90	97	1	356	51	2	8	37	1.47
865470--865508	19	2.1	18	85	4	51	64	0	0	35	0.94
882478--882548	34	2.1	34	86	5	99	32	9	8	49	1.66
884786--885005	109	2.0	110	99	0	433	52	6	1	39	1.38
886457--886563	39	2.7	39	95	0	187	42	17	28	11	1.84
886139--886519	132	2.9	130	76	8	367	37	15	28	18	1.92
886541--886619	39	2.0	39	100	0	158	41	20	15	22	1.89
886634--886855	96	2.3	96	79	4	252	40	15	24	19	1.90
900190--900239	26	1.9	26	88	8	75	32	10	10	48	1.70
901292--901367	31	2.4	30	78	10	80	42	2	10	44	1.52
907007--907037	16	1.9	16	93	0	53	29	0	3	67	1.06
921022--921057	19	1.9	18	88	5	54	72	5	0	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922751--922838	45	2.0	45	93	0	149	21	22	29	26	1.99
936568--936679	51	2.2	51	82	6	129	33	16	8	42	1.77
938606--938648	19	2.3	18	84	4	59	60	18	2	18	1.47
941953--941996	14	2.9	16	75	24	51	45	0	4	50	1.22
951906--951935	5	6.0	5	100	0	60	40	0	0	60	0.97
952276--952395	59	2.0	60	96	3	224	31	5	18	45	1.71
956176--956308	38	3.4	38	73	11	110	24	19	26	30	1.98
959745--959797	24	2.2	24	96	3	99	47	3	15	33	1.63
962184--962213	2	15.5	2	93	6	53	50	0	0	50	1.00
968607--968631	11	2.3	11	100	0	50	12	28	16	44	1.83
972386--972647	51	5.3	51	87	6	396	31	14	23	30	1.94
973102--973185	41	2.0	41	93	0	141	25	9	21	44	1.82
973513--973574	32	2.0	31	87	6	90	51	20	1	25	1.57
979555--979603	19	2.5	19	80	3	53	67	8	0	24	1.18
984406--984460	14	3.7	14	72	13	56	49	1	1	47	1.23
984411--984469	31	1.9	31	96	0	109	42	1	1	54	1.20
990899--990992	48	2.0	48	91	0	152	19	36	8	36	1.82
994452--994483	14	2.1	16	88	11	50	53	0	9	37	1.34
994448--994486	15	2.5	17	84	16	57	53	0	7	38	1.30
1012661--1012709	20	2.6	18	81	15	62	48	4	6	40	1.47
1012698--1012726	10	2.7	11	89	10	51	62	0	0	37	0.96
1012741--1012959	106	2.1	107	98	1	424	46	10	10	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020830--1020915	42	2.0	42	100	0	172	20	23	6	48	1.73
1023851--1023916	31	2.1	31	91	0	105	46	10	9	33	1.70
1042368--1042413	13	3.7	13	72	21	53	41	6	13	39	1.70
1047205--1047256	27	1.9	27	92	0	86	38	15	7	38	1.76
1047205--1047264	27	2.2	27	87	0	84	38	13	10	38	1.78
1048260--1048450	60	3.1	61	83	5	244	47	12	15	24	1.79
1051638--1051682	17	2.6	17	82	3	54	53	0	2	44	1.13
1059145--1059290	79	1.8	79	91	0	238	25	26	30	17	1.97
1064714--1064776	31	2.0	31	84	0	81	36	23	12	26	1.91
1064655--1064824	90	1.9	90	82	4	218	40	20	15	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145