genome.fa.s13.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  28  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10396394--10396447	6	9.0	6	77	0	54	64	3	1	29	1.21
10396455--10396505	21	2.4	21	80	6	59	76	7	3	11	1.13
10396865--10397093	3	76.3	3	100	0	458	66	0	0	33	0.92
10397422--10397513	13	7.0	13	84	7	114	56	7	2	33	1.40
10398432--10398483	22	2.4	22	83	6	61	17	11	48	23	1.79
10403143--10403312	43	4.0	42	77	14	179	22	17	28	31	1.97
10403155--10403312	84	1.9	84	83	7	205	22	18	28	31	1.97
10403474--10403505	16	1.9	17	93	6	57	40	0	21	37	1.54
10405177--10405324	43	3.4	43	79	5	156	32	25	15	26	1.95
10407169--10407193	5	5.0	5	100	0	50	20	0	0	80	0.72
10410457--10410523	28	2.4	28	92	0	107	29	10	28	31	1.90
10418626--10418669	22	2.0	22	95	0	79	52	4	2	40	1.34
10422975--10423035	24	2.4	26	81	13	81	67	1	6	24	1.24
10422992--10423038	24	2.0	24	100	0	94	61	0	8	29	1.25
10429731--10429793	22	3.0	19	77	15	54	46	1	11	41	1.49
10431142--10431212	26	2.7	26	84	0	97	25	28	21	25	1.99
10431422--10431495	13	5.7	13	83	0	85	45	1	20	32	1.59
10431425--10431495	26	2.7	26	91	0	106	45	1	21	32	1.61
10432762--10432848	35	2.5	35	88	3	131	12	17	34	35	1.87
10434630--10434872	17	13.3	18	71	18	121	45	10	13	30	1.77
10434629--10434840	17	11.7	18	73	16	154	44	11	14	29	1.79
10434828--10434870	21	2.0	21	86	4	59	48	6	4	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10434934--10434980	17	2.7	17	81	15	60	48	6	12	31	1.66
10434934--10434978	18	2.6	18	82	13	58	48	4	13	33	1.62
10435443--10435491	24	2.0	24	84	7	64	2	24	0	73	0.94
10435738--10435783	17	2.7	17	82	0	65	6	28	47	17	1.72
10435810--10435863	16	3.2	17	81	7	65	0	24	0	75	0.80
10435811--10435880	9	7.1	9	75	20	52	0	21	0	78	0.75
10435962--10436026	14	4.4	14	77	9	58	0	23	4	72	1.03
10435974--10436038	20	3.1	21	78	14	64	0	18	7	73	1.06
10436062--10436095	17	2.0	17	88	0	50	8	20	52	17	1.71
10436154--10436204	26	2.0	26	88	0	75	0	13	5	80	0.89
10436366--10436624	30	8.7	30	81	1	306	40	1	21	36	1.63
10436366--10436624	59	4.3	60	86	1	324	40	1	21	36	1.63
10436366--10436624	89	2.9	90	91	1	405	40	1	21	36	1.63
10437567--10437704	42	3.3	42	81	6	154	31	24	13	29	1.94
10447775--10447814	18	2.2	18	86	0	53	52	2	2	42	1.28
10452109--10452325	99	2.2	98	82	5	242	25	35	0	38	1.60
10452138--10452325	99	1.9	98	86	3	270	25	35	0	38	1.60
10452311--10452544	127	1.9	122	88	4	351	21	33	0	44	1.58
10457343--10457388	21	2.4	19	89	10	67	63	0	0	36	0.95
10457343--10457397	10	5.6	10	80	18	62	65	0	0	34	0.93
10457343--10457397	19	2.8	20	83	10	69	65	0	0	34	0.93
10457725--10457794	17	3.9	17	80	14	79	67	1	1	30	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10457725--10457794	19	3.8	18	80	14	81	67	1	1	30	1.08
10458720--10458762	21	2.0	22	86	4	61	53	6	2	37	1.41
10460951--10460989	19	2.1	19	85	9	53	53	0	2	43	1.14
10462062--10462110	21	2.3	20	86	10	71	63	8	8	20	1.48
10462395--10462450	24	2.2	24	84	12	69	67	1	3	26	1.16
10462393--10462452	25	2.4	25	81	13	70	66	1	3	28	1.17
10465151--10465252	24	4.2	24	70	17	68	37	20	25	16	1.93
10465403--10465484	24	3.4	23	77	9	74	35	15	29	19	1.93
10465796--10465847	10	5.1	10	79	9	52	42	13	0	44	1.44
10465806--10465847	21	2.0	20	90	4	66	42	14	0	42	1.45
10465816--10465845	15	1.9	16	93	6	53	40	13	0	46	1.43
10467101--10467140	12	3.6	12	74	19	50	35	0	0	65	0.93
10470772--10470815	19	2.3	19	88	0	61	56	27	2	13	1.49
10473450--10473854	90	4.4	90	87	6	569	49	10	9	30	1.68
10473450--10473854	193	2.2	182	88	9	622	49	10	9	30	1.68
10474158--10474207	17	2.9	17	93	0	82	40	6	2	52	1.38
10474525--10474586	19	3.2	19	76	13	72	50	14	16	19	1.79
10474721--10474757	3	12.0	3	94	5	65	64	0	35	0	0.94
10474723--10474754	16	2.0	16	100	0	64	62	0	37	0	0.95
10474721--10474758	19	2.0	19	100	0	76	63	0	36	0	0.95
10483808--10483948	40	3.6	40	76	6	153	31	24	17	26	1.97
10484105--10484162	24	2.4	24	75	16	57	48	15	0	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10484963--10485001	19	2.0	20	90	5	62	41	5	5	48	1.47
10485359--10485401	23	1.9	23	95	4	79	27	0	0	72	0.85
10486768--10486797	13	2.3	13	100	0	60	40	0	0	60	0.97
10490866--10490894	2	14.5	2	100	0	58	48	0	0	51	1.00
10493658--10493697	20	2.0	20	85	9	55	37	10	10	42	1.72
10494129--10494163	14	2.5	14	90	0	52	25	5	5	62	1.40
10496531--10496689	60	2.6	60	81	11	189	21	18	15	44	1.86
10497134--10497212	31	2.5	31	87	0	113	49	12	12	25	1.76
10500485--10500567	15	5.3	15	76	11	69	50	0	48	1	1.08
10500471--10500645	33	5.7	32	75	15	111	46	0	52	0	1.09
10500515--10500658	3	48.0	3	76	5	112	44	0	54	0	1.04
10500518--10500658	15	9.6	15	80	7	139	44	0	54	0	1.05
10500479--10500647	36	4.7	35	77	10	155	46	0	52	0	1.09
10500471--10500639	6	27.2	6	70	15	94	46	0	52	0	1.09
10505219--10505274	29	1.9	29	85	7	78	62	5	8	23	1.45
10505440--10505503	27	2.3	28	86	2	85	21	21	4	51	1.66
10510934--10510971	20	1.9	20	88	0	58	28	0	5	65	1.14
10511285--10511429	46	3.1	46	60	14	107	34	6	8	50	1.59
10511298--10511445	48	3.1	48	62	14	126	32	7	11	48	1.67
10511257--10511450	94	2.0	96	98	2	374	35	6	9	49	1.60
10515639--10515680	22	1.9	22	90	0	66	9	19	28	42	1.82
10515742--10515909	43	3.9	43	92	0	255	29	29	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10515766--10515952	43	4.3	43	87	2	155	27	31	18	22	1.97
10515744--10515952	86	2.4	86	84	3	224	29	30	18	22	1.97
10515999--10516034	16	2.2	16	90	0	54	52	8	0	38	1.32
10517230--10517269	16	2.5	15	84	11	53	52	0	22	25	1.47
10517564--10517609	23	2.0	23	100	0	92	21	13	26	39	1.90
10517568--10517617	23	2.3	22	89	6	75	22	18	26	34	1.96
10522258--10522316	18	3.3	18	77	13	59	38	8	16	35	1.80
10526504--10526587	25	3.4	24	79	12	73	26	1	7	65	1.25
10526524--10526593	24	2.9	23	76	16	70	22	1	8	67	1.26
10526575--10526725	71	2.1	72	97	1	286	33	8	3	54	1.50
10526805--10527065	43	6.1	43	91	0	364	29	29	18	22	1.97
10526827--10527098	43	6.4	41	86	5	154	27	30	18	23	1.98
10526813--10527098	86	3.3	86	87	2	290	28	29	18	23	1.98
10527134--10527169	16	2.2	16	90	0	54	52	8	0	38	1.32
10532388--10532486	7	14.0	7	72	13	51	38	42	0	19	1.51
10532443--10532510	14	4.9	14	77	10	59	27	51	0	20	1.48
10532485--10532509	7	3.6	7	100	0	50	16	56	0	28	1.41
10532512--10532620	57	1.9	57	81	3	130	45	28	1	23	1.63
10532592--10532633	15	2.9	14	93	6	75	45	33	0	21	1.52
10532678--10532720	22	2.0	22	90	0	68	9	13	27	48	1.73
10533474--10533592	41	2.9	40	78	8	132	30	24	24	21	1.99
10533651--10533765	40	2.9	40	80	2	144	20	21	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539657--10539691	15	2.3	15	95	0	61	14	14	17	54	1.72
10550147--10550186	20	2.0	20	95	0	71	42	15	12	30	1.83
10553288--10553344	8	7.9	7	77	16	55	78	3	3	14	1.01
10562658--10562697	16	2.5	17	84	11	50	37	7	52	2	1.43
10569081--10569298	110	2.0	111	98	0	420	27	11	14	46	1.79
10570024--10570158	67	2.0	67	97	0	252	32	14	22	30	1.94
10576446--10576601	38	4.1	38	100	0	312	28	15	23	32	1.95
10580513--10580671	42	3.7	42	76	15	132	30	27	17	23	1.97
10581863--10581891	14	2.0	15	93	6	51	51	20	0	27	1.47
10590099--10590134	15	2.5	14	86	8	54	44	8	0	47	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145