genome.fa.s13.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  143  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47285730--47285821	35	2.6	36	77	8	109	41	26	5	27	1.77
47285748--47285819	21	3.4	21	75	7	65	44	25	4	26	1.72
47285745--47285827	42	2.0	42	87	0	121	44	27	3	24	1.70
47285886--47285930	14	3.3	13	85	14	56	48	33	0	17	1.48
47286006--47286044	13	2.8	13	85	11	51	46	33	5	15	1.68
47285991--47286050	15	4.2	14	77	16	52	43	35	5	16	1.70
47286124--47286162	13	2.9	13	84	3	51	23	0	28	48	1.51
47287358--47287401	22	2.0	22	82	8	54	47	0	18	34	1.49
47289165--47289283	54	2.2	54	87	0	184	36	20	7	36	1.81
47293808--47293851	3	15.0	3	95	4	81	65	0	0	34	0.93
47295407--47295940	41	12.6	41	74	10	376	26	21	20	30	1.98
47295371--47295940	85	6.7	85	78	7	455	26	20	21	31	1.98
47295618--47295900	126	2.2	126	89	1	433	27	21	21	29	1.99
47295407--47295940	211	2.5	213	85	2	734	26	21	20	30	1.98
47296000--47296249	43	5.8	42	70	9	148	24	24	22	30	1.99
47296044--47296296	87	2.9	87	92	0	407	22	24	23	28	1.99
47296214--47296846	132	4.8	132	90	1	948	24	24	21	30	1.99
47296044--47296818	44	17.7	44	66	12	234	24	24	21	29	1.99
47297800--47297851	5	10.0	5	79	8	59	0	17	3	78	0.89
47297801--47297854	17	3.3	15	87	12	72	0	16	3	79	0.87
47297800--47297854	27	2.0	27	86	6	76	0	18	3	78	0.90
47301039--47301085	19	2.5	20	86	6	62	42	10	21	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47303347--47303387	3	13.7	3	89	0	64	68	4	0	26	1.10
47312044--47312383	174	2.0	174	90	1	538	32	19	14	33	1.92
47321969--47322024	24	2.3	23	82	11	67	37	0	17	44	1.49
47324268--47324302	2	17.5	2	87	0	52	42	0	5	51	1.25
47328456--47328487	3	10.7	3	100	0	64	68	0	0	31	0.90
47328456--47328501	12	3.8	12	91	5	51	65	4	0	30	1.12
47334258--47334696	125	3.5	125	93	0	709	31	14	19	35	1.92
47337703--47337822	28	4.4	29	68	17	103	21	2	24	51	1.60
47337695--47338035	51	6.8	51	73	15	259	23	2	23	50	1.61
47337756--47337834	28	2.8	29	75	11	83	24	2	25	48	1.64
47337612--47337982	23	15.5	23	79	11	291	23	2	25	49	1.63
47337951--47338017	30	2.2	30	81	5	82	20	0	25	53	1.46
47338032--47338164	71	1.9	70	90	6	214	46	13	0	39	1.43
47338033--47338151	25	4.9	25	73	15	115	44	13	0	42	1.43
47338576--47338615	18	2.2	18	90	0	62	40	5	30	25	1.77
47339454--47339492	21	1.9	20	84	5	51	56	7	2	33	1.41
47340464--47340499	11	3.2	11	92	4	54	50	0	33	16	1.46
47341355--47341397	22	2.0	22	86	9	61	60	11	9	18	1.57
47343378--47343410	11	3.1	11	91	4	50	0	27	0	72	0.85
47346491--47346584	26	3.8	26	81	16	101	23	25	19	31	1.98
47348374--47348417	21	2.2	20	87	4	61	34	27	0	38	1.57
47350851--47350915	3	21.0	3	72	12	51	61	1	7	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47351067--47351116	15	3.6	14	77	17	50	66	2	8	24	1.29
47359889--47360004	45	2.6	45	83	5	146	42	14	25	17	1.87
47365234--47365316	27	3.0	27	81	8	96	38	4	4	51	1.44
47365854--47365895	14	2.9	14	83	16	50	54	0	0	45	0.99
47370168--47370215	22	2.1	23	85	11	64	35	0	2	62	1.07
47382971--47383009	14	2.7	14	88	4	60	61	2	2	33	1.23
47385194--47385254	21	2.9	21	78	4	61	21	32	32	13	1.91
47394419--47394756	168	2.0	170	98	1	662	37	3	10	48	1.55
47400563--47400604	17	2.5	17	84	0	57	14	7	2	76	1.10
47401613--47401650	15	2.6	14	91	8	58	84	0	15	0	0.63
47406474--47406577	40	2.6	40	78	6	95	44	7	5	42	1.57
47406786--47406885	20	4.9	18	73	23	67	41	15	8	36	1.76
47406784--47406874	20	4.4	20	77	10	87	40	16	6	36	1.75
47407031--47407099	20	3.5	18	75	11	57	34	13	7	44	1.71
47406987--47407099	60	1.9	60	83	3	147	36	15	8	39	1.78
47407214--47407307	40	2.3	40	80	3	100	36	8	15	39	1.79
47407299--47407338	20	2.0	20	85	0	53	42	10	7	40	1.67
47407392--47407440	20	2.4	21	75	6	55	40	6	8	44	1.59
47417004--47417041	14	2.9	13	84	7	51	50	0	0	50	1.00
47417015--47417060	14	2.9	17	81	12	55	45	8	0	45	1.34
47418231--47418275	22	2.0	22	82	0	54	24	26	28	20	1.99
47420017--47420055	11	3.5	11	82	0	51	66	7	2	23	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47423109--47423288	98	1.9	96	88	4	272	24	15	16	43	1.86
47423099--47423358	106	2.6	97	80	10	290	25	18	17	38	1.92
47423205--47423395	106	1.8	106	79	2	222	31	17	14	36	1.90
47426874--47426945	36	2.0	36	97	0	135	63	5	9	20	1.44
47426961--47427011	19	2.5	20	87	6	68	5	17	1	74	1.11
47427879--47427904	3	8.7	3	100	0	52	30	0	0	69	0.89
47428078--47428164	45	1.9	45	81	4	104	39	4	2	54	1.34
47429355--47429588	27	9.6	25	70	21	117	63	0	13	22	1.35
47429336--47429588	47	5.3	47	74	20	167	63	0	13	22	1.34
47429362--47429579	72	3.1	70	85	10	277	63	0	13	22	1.32
47429336--47429588	119	2.1	117	85	9	336	63	0	13	22	1.34
47429409--47429582	21	7.6	21	73	20	120	64	0	12	22	1.27
47429503--47429565	16	3.9	16	73	8	56	71	0	11	17	1.14
47429530--47429566	17	2.2	17	90	0	56	75	0	10	13	1.04
47429381--47429616	72	3.2	72	80	15	240	63	0	13	22	1.33
47429575--47429651	5	14.6	5	75	12	66	58	1	22	18	1.46
47429575--47429637	6	11.3	6	75	11	55	57	1	22	19	1.49
47429503--47429617	28	4.4	27	76	19	84	64	0	14	20	1.29
47429586--47429617	16	1.9	17	93	6	57	59	0	18	21	1.38
47429575--47429637	22	2.8	22	82	2	72	57	1	22	19	1.49
47429586--47429633	16	2.9	16	84	9	53	58	2	18	20	1.49
47429573--47429627	28	2.0	28	92	7	94	56	1	20	21	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47430077--47430125	21	2.3	22	79	13	57	63	0	14	22	1.30
47430124--47430326	47	4.4	45	87	7	273	63	0	12	24	1.32
47430176--47430312	21	6.0	21	71	18	87	64	0	13	21	1.33
47430124--47430326	93	2.2	94	91	2	329	63	0	12	24	1.32
47430316--47430415	17	6.2	16	73	17	73	63	2	19	16	1.41
47430361--47430417	19	3.2	18	87	5	80	64	0	19	15	1.28
47430316--47430416	41	2.3	45	80	10	120	63	1	18	15	1.40
47430316--47430411	5	18.0	5	71	18	52	62	2	18	16	1.42
47430370--47430426	17	3.2	16	80	14	60	66	0	21	12	1.23
47430444--47430509	29	2.3	29	79	10	73	27	24	31	16	1.96
47430852--47430890	19	2.1	19	90	0	60	48	0	23	28	1.51
47430918--47431034	18	6.3	18	72	18	71	64	1	13	19	1.36
47430967--47431005	20	1.9	21	89	5	62	64	0	12	23	1.28
47430987--47431018	17	1.9	16	93	6	55	56	0	18	25	1.42
47444740--47444824	38	2.2	39	91	4	136	38	1	5	54	1.33
47463317--47464133	100	8.2	100	83	4	895	21	20	25	32	1.97
47463127--47464133	200	5.1	200	81	5	1025	22	20	24	32	1.98
47463397--47464126	50	14.7	49	68	12	342	21	20	25	33	1.97
47482644--47482702	31	1.9	30	82	3	73	38	10	13	37	1.79
47483100--47483153	21	2.6	21	87	0	81	31	31	7	29	1.85
47484477--47484529	21	2.5	21	87	0	79	30	35	9	24	1.87
47493935--47493981	25	1.9	25	83	12	62	59	6	0	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47512630--47512684	23	2.4	23	82	14	62	41	0	1	56	1.10
47513619--47513671	11	4.8	11	83	0	61	11	11	9	67	1.41
47513619--47513683	33	2.0	33	90	0	103	13	10	7	67	1.41
47519766--47519834	7	10.3	7	92	6	92	76	0	0	23	0.78
47519766--47519834	12	5.2	13	88	11	88	76	0	0	23	0.78
47519768--47519833	6	10.0	6	91	8	78	78	0	0	21	0.75
47531987--47532016	15	2.0	15	93	0	51	33	30	3	33	1.74
47537087--47537114	2	14.0	2	100	0	56	50	0	0	50	1.00
47544917--47544947	15	2.1	15	93	0	53	22	19	29	29	1.98
47546689--47546749	29	2.0	31	84	6	81	29	3	6	60	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145