genome.fa.s13.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  52  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18143047--18143204	29	5.2	29	66	15	88	27	26	18	27	1.99
18143017--18143364	32	11.3	32	64	17	130	28	26	15	29	1.96
18142850--18143384	61	8.8	61	83	0	622	28	26	15	29	1.96
18143695--18143732	15	2.5	16	83	8	53	31	28	15	23	1.96
18163211--18163255	23	2.0	23	100	0	90	22	8	22	46	1.79
18175781--18175914	55	2.4	55	77	2	135	20	22	30	26	1.98
18175810--18175930	55	2.2	54	75	10	118	20	19	30	28	1.97
18177614--18177655	21	2.0	21	81	13	50	45	14	0	40	1.45
18180812--18180870	23	2.6	23	78	13	68	66	5	0	28	1.13
18181514--18181548	18	1.9	18	94	0	61	28	14	11	45	1.79
18195202--18195249	18	2.5	19	80	10	53	29	35	20	14	1.93
18214814--18214852	10	3.9	10	82	0	51	25	2	23	48	1.63
18219503--18219558	27	2.1	27	100	0	112	33	23	7	35	1.82
18219510--18219567	27	2.1	27	83	0	71	36	22	5	36	1.77
18223693--18223737	23	2.0	23	90	0	72	40	17	8	33	1.81
18223694--18223743	23	2.2	23	85	0	64	42	18	10	30	1.82
18224246--18224300	27	2.0	27	96	0	101	58	0	27	14	1.37
18226084--18226269	27	6.9	27	82	4	198	19	19	16	44	1.87
18226083--18226269	54	3.5	54	84	7	245	19	19	17	43	1.88
18226084--18226269	81	2.3	81	83	7	234	19	19	16	44	1.87
18226590--18226665	27	2.8	27	93	0	125	14	27	34	23	1.94
18229917--18229943	11	2.5	11	100	0	54	40	14	7	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18231471--18232635	285	4.0	285	92	4	1989	30	11	6	51	1.62
18232174--18232209	12	3.2	12	92	7	58	27	0	0	72	0.85
18231471--18232635	582	2.0	570	94	3	2043	30	11	6	51	1.62
18232762--18232801	15	2.7	15	96	0	71	25	5	0	70	1.08
18232893--18232938	23	2.0	23	87	4	67	39	10	6	43	1.66
18233056--18233130	21	3.3	24	71	16	70	0	30	0	69	0.89
18233058--18233179	10	11.1	11	71	15	83	0	31	0	68	0.96
18233095--18233170	4	19.5	4	73	24	56	1	26	0	72	0.93
18233062--18233173	59	1.9	59	83	10	149	0	28	0	70	0.93
18233061--18233174	44	2.6	44	93	4	187	0	29	0	69	0.95
18233061--18233192	44	3.0	44	88	6	169	1	31	0	66	1.01
18233912--18233956	10	4.5	10	88	0	72	66	2	31	0	1.04
18233912--18233958	15	3.1	15	81	0	67	68	2	29	0	1.02
18233904--18233955	20	2.8	18	83	13	70	63	1	34	0	1.06
18257010--18257039	12	2.4	13	94	5	53	66	6	6	20	1.38
18261409--18261562	25	6.3	25	79	6	147	30	21	24	24	1.99
18261406--18261574	48	3.4	49	82	7	200	31	20	23	24	1.98
18275302--18275330	12	2.4	12	100	0	58	62	10	6	20	1.50
18282790--18282889	20	5.0	20	69	13	80	34	16	32	18	1.92
18282778--18282889	40	2.8	40	86	0	152	37	15	29	17	1.91
18285125--18285232	50	2.1	51	86	1	146	27	26	18	26	1.98
18285125--18285258	51	2.7	50	83	1	133	27	26	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18288009--18288036	13	2.2	13	100	0	56	42	17	14	25	1.87
18295575--18295752	51	3.5	50	83	2	203	29	25	16	28	1.97
18295571--18295709	51	2.8	50	88	1	206	29	28	15	26	1.96
18307141--18307282	73	1.9	74	89	1	223	21	19	14	44	1.86
18309704--18309845	25	5.8	25	72	12	114	26	22	18	32	1.97
18309704--18309831	49	2.6	49	87	0	193	27	23	17	31	1.97
18309705--18309854	49	3.0	49	86	0	183	28	22	19	30	1.98
18310028--18310089	31	2.1	29	82	17	74	46	8	16	29	1.75
18318405--18318445	14	2.9	14	92	0	55	29	12	26	31	1.92
18318414--18318445	7	4.6	7	100	0	64	28	15	28	28	1.96
18318405--18318445	21	2.0	21	90	0	64	29	12	26	31	1.92
18332836--18332860	12	2.1	12	100	0	50	60	24	0	16	1.36
18337955--18337991	15	2.5	15	95	0	65	62	24	2	10	1.41
18341179--18341328	41	3.6	41	91	0	237	28	18	28	25	1.98
18345688--18345755	26	2.7	26	79	2	75	20	26	19	33	1.96
18345786--18345866	24	3.4	25	71	11	62	19	28	18	33	1.96
18349577--18349617	20	2.0	20	100	0	82	31	19	14	34	1.92
18357775--18357951	13	13.4	13	70	18	84	34	16	2	46	1.59
18357775--18357941	79	2.1	80	88	4	257	35	16	2	45	1.61
18357775--18357941	40	4.2	40	84	4	230	35	16	2	45	1.61
18357997--18358060	25	2.5	25	87	2	83	31	26	18	23	1.98
18359132--18359165	17	1.9	18	88	5	52	55	5	0	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18366549--18366614	31	2.1	31	85	0	87	48	9	7	34	1.63
18366556--18366624	31	2.2	31	86	0	93	49	7	7	36	1.58
18367973--18368008	1	36.0	1	100	0	72	100	0	0	0	0.00
18367932--18368046	59	1.9	59	89	3	178	76	11	4	7	1.14
18371824--18371854	16	1.9	16	93	0	53	48	9	6	35	1.62
18371986--18372036	20	2.5	20	90	6	77	37	0	5	56	1.23
18372124--18372158	18	1.9	18	94	0	61	22	5	20	51	1.68
18377714--18377990	44	6.5	44	68	13	103	29	22	20	27	1.98
18377742--18378078	44	7.7	44	71	11	203	27	21	20	29	1.98
18377714--18378069	173	2.1	173	90	3	556	27	22	20	29	1.98
18405628--18405657	15	2.0	15	93	0	51	80	3	0	16	0.85
18414264--18414430	54	3.2	54	69	17	181	47	8	7	36	1.63
18414244--18414447	101	2.0	102	99	0	401	44	9	7	38	1.66
18416636--18416688	27	2.0	27	84	0	70	32	35	20	11	1.88
18416649--18416702	27	2.0	27	85	0	72	31	29	22	16	1.96
18418064--18418246	38	4.8	37	83	4	213	17	18	27	37	1.93
18418064--18418246	76	2.4	76	86	1	242	17	18	27	37	1.93
18418739--18418794	21	2.7	21	88	0	85	26	8	35	28	1.87
18423152--18423597	29	15.2	29	98	1	840	37	10	0	51	1.36
18426525--18426558	17	2.0	17	94	0	59	58	8	0	32	1.29
18426748--18426832	21	4.0	21	84	3	98	52	16	29	1	1.51
18430510--18430765	87	3.0	86	87	4	354	28	15	21	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18432908--18432961	7	7.7	7	95	0	81	20	29	12	37	1.90
18438584--18438680	4	24.2	4	95	0	176	48	24	0	26	1.51
18442303--18442354	27	1.9	27	92	0	86	46	7	7	38	1.61
18456497--18456586	44	2.0	44	85	4	119	28	12	11	47	1.75
18463948--18464009	16	3.9	16	75	8	63	46	1	19	32	1.59
18475893--18475960	28	2.4	28	92	0	109	29	4	23	42	1.73
18480721--18480945	109	2.1	110	98	1	436	42	11	16	29	1.83
18486135--18487453	662	2.0	658	83	3	1641	32	20	13	33	1.91
18503943--18503993	23	2.2	23	82	3	57	49	19	11	19	1.79
18514306--18514500	42	4.7	41	76	6	160	41	16	22	18	1.90
18514340--18514494	84	1.9	83	83	4	204	40	16	23	20	1.91
18514338--18514489	21	7.3	21	68	3	83	40	15	23	20	1.91
18514977--18515596	310	2.0	309	98	1	1206	32	19	6	41	1.78
18522599--18522638	12	3.6	12	74	19	50	27	12	0	60	1.33
18522592--18522645	21	2.6	21	100	0	108	29	12	0	57	1.36
18527539--18527572	7	5.1	7	89	10	54	8	47	0	44	1.34
18527539--18527570	13	2.5	13	100	0	64	6	46	0	46	1.27
18529679--18529756	27	2.9	26	81	5	93	28	25	10	35	1.89
18542164--18542202	19	2.1	19	100	0	78	20	20	15	43	1.88
18554747--18554820	38	1.9	38	91	5	123	39	21	12	27	1.89
18555618--18555651	18	2.0	18	88	11	54	76	0	23	0	0.79
18562824--18562879	22	2.5	21	77	13	58	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18562932--18562970	17	2.3	17	90	0	60	23	0	5	71	1.05
18563272--18563366	41	2.3	41	80	7	104	27	24	20	28	1.99
18565075--18565344	43	6.3	43	80	2	301	31	25	18	24	1.98
18565078--18565318	85	2.8	85	81	1	268	30	25	19	24	1.98
18565179--18565369	86	2.2	84	75	9	197	28	25	17	28	1.97
18569449--18569474	12	2.2	12	100	0	52	30	26	7	34	1.85
18570952--18570984	13	2.5	13	90	9	50	72	6	3	18	1.18
18571121--18571166	20	2.4	19	78	7	58	41	6	17	34	1.75
18571311--18571360	25	2.0	26	84	4	66	60	6	0	34	1.21
18572091--18572141	20	2.7	20	82	11	63	76	3	1	17	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145