genome.fa.s13.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  69  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23563195--23563437	92	2.7	92	90	2	393	23	27	13	34	1.92
23564144--23564177	16	2.1	17	88	5	52	50	0	23	26	1.50
23564511--23564549	15	2.7	15	92	4	62	38	10	2	48	1.51
23568116--23569639	94	16.2	94	81	4	1273	33	18	18	29	1.95
23571554--23571643	3	29.7	3	84	6	119	30	0	3	66	1.07
23580846--23580889	21	2.1	21	83	8	54	34	0	2	63	1.07
23585905--23585940	6	5.7	6	87	12	54	80	0	19	0	0.71
23589042--23590406	133	10.2	132	82	3	1073	29	23	17	30	1.97
23589064--23590406	44	30.2	47	71	10	578	29	22	17	30	1.97
23589153--23589601	89	5.0	89	70	9	277	30	22	16	30	1.96
23589042--23590406	222	6.1	222	75	6	622	29	23	17	30	1.97
23589664--23590406	177	4.2	177	96	0	1308	27	23	17	31	1.97
23589664--23590406	88	8.4	88	91	0	1207	27	23	17	31	1.97
23589664--23590406	265	2.8	265	91	0	1254	27	23	17	31	1.97
23591431--23591466	16	2.2	16	90	0	54	13	19	0	66	1.24
23591418--23591457	21	1.9	21	85	10	55	12	20	0	67	1.22
23609016--23609720	92	7.7	92	94	0	1232	22	27	13	36	1.92
23609016--23609720	276	2.6	276	98	0	1356	22	27	13	36	1.92
23613759--23614296	265	2.0	265	99	0	1067	34	12	13	39	1.82
23620951--23621032	42	2.0	42	85	0	110	28	31	17	23	1.96
23620951--23621044	42	2.2	42	82	0	107	27	30	18	23	1.97
23622157--23622187	14	2.1	15	94	5	55	45	35	6	12	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23622852--23622890	3	13.0	3	100	0	78	33	0	0	66	0.92
23622944--23622982	12	3.2	12	82	7	51	23	5	0	71	1.05
23622973--23623018	20	2.3	21	77	7	51	39	6	0	54	1.26
23623238--23623589	175	2.0	176	98	1	688	24	11	7	55	1.61
23625233--23625431	98	2.0	99	99	0	391	57	3	8	31	1.43
23625567--23625625	18	3.3	18	80	15	68	62	8	0	28	1.24
23635731--23635789	18	3.3	18	80	15	68	62	8	0	28	1.24
23646732--23646799	4	17.2	4	71	19	54	69	2	4	23	1.21
23646810--23647172	89	4.1	89	93	0	584	20	24	26	27	1.99
23646827--23647165	44	7.6	44	77	5	351	20	25	27	26	1.99
23648446--23648485	18	2.3	18	86	4	55	0	17	0	82	0.67
23653975--23654005	16	1.9	16	100	0	62	19	19	6	54	1.65
23654375--23654401	2	13.5	2	100	0	54	51	0	48	0	1.00
23654546--23654630	25	3.0	30	85	11	108	25	22	7	44	1.78
23655423--23655477	26	2.0	26	86	6	74	54	23	0	21	1.45
23655460--23655513	26	2.1	26	83	13	76	42	37	0	20	1.52
23656819--23656858	16	2.5	16	87	0	53	57	0	37	5	1.21
23656856--23656902	16	3.1	15	82	11	51	63	0	34	2	1.06
23657000--23657057	4	14.8	4	73	22	52	74	0	25	0	0.82
23656989--23657050	32	1.9	32	84	12	83	72	0	27	0	0.85
23656991--23657053	28	2.4	26	80	17	76	74	0	25	0	0.82
23656995--23657057	12	5.8	11	73	15	60	76	0	23	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23657226--23657252	11	2.5	11	100	0	54	25	44	29	0	1.54
23657324--23657358	8	4.6	8	89	10	56	82	0	17	0	0.66
23657320--23657357	14	2.7	14	92	8	60	84	0	15	0	0.63
23657320--23657358	15	2.6	14	88	11	60	84	0	15	0	0.62
23657838--23658277	18	23.5	18	68	18	163	34	13	9	42	1.77
23657826--23658086	35	7.3	35	70	15	133	34	15	10	39	1.81
23657912--23657970	16	3.5	16	76	15	57	33	16	8	40	1.79
23658172--23658276	35	2.9	35	86	10	133	35	10	10	43	1.73
23658120--23658280	20	8.6	20	67	23	102	39	9	9	41	1.71
23678491--23678566	38	2.0	38	92	0	125	27	14	7	50	1.71
23680344--23680383	3	13.3	3	89	0	62	65	2	2	30	1.19
23680277--23680568	145	2.0	146	99	0	577	56	8	8	26	1.58
23680489--23680528	3	13.3	3	89	0	62	65	2	2	30	1.19
23682258--23682291	5	6.6	5	86	6	50	14	2	0	82	0.79
23682257--23682291	11	3.3	11	88	8	54	14	2	0	82	0.77
23691146--23691205	27	2.2	27	91	5	95	21	20	23	35	1.96
23693883--23693924	9	4.7	9	90	0	66	30	11	21	35	1.90
23696278--23696317	3	13.3	3	100	0	80	32	0	0	67	0.91
23696779--23696903	62	2.0	62	90	0	196	36	13	22	28	1.92
23696871--23697221	110	3.2	109	90	3	558	30	14	20	34	1.93
23697286--23697327	22	1.9	22	90	0	66	28	21	7	42	1.79
23697286--23697335	22	2.3	22	85	0	64	32	18	6	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23697729--23697974	41	6.0	41	87	2	361	17	21	30	31	1.96
23711342--23711380	2	19.5	2	100	0	78	0	0	48	51	1.00
23711935--23711975	3	13.7	3	94	0	73	68	2	0	29	1.03
23712313--23712458	57	2.5	59	85	9	192	28	21	26	23	1.99
23716596--23717262	100	6.7	100	88	1	915	32	25	20	22	1.98
23716602--23717262	50	13.2	50	72	7	473	32	24	20	22	1.98
23717268--23717560	44	6.8	43	72	8	211	30	20	20	28	1.98
23717255--23717552	129	2.3	129	92	0	497	30	20	20	28	1.98
23719465--23719732	109	2.5	109	91	0	439	29	13	21	35	1.92
23723039--23723695	80	8.0	80	90	5	1026	22	26	14	36	1.93
23723213--23723953	80	8.8	83	89	6	1059	22	26	14	36	1.93
23722895--23723990	255	4.2	255	89	6	1590	22	26	14	36	1.93
23726560--23726616	29	2.0	29	96	0	105	40	0	14	45	1.44
23729432--23729495	23	2.7	23	78	2	65	42	14	12	31	1.82
23739063--23739110	25	2.0	24	83	4	60	45	12	0	41	1.42
23741798--23741879	31	2.6	31	82	5	94	59	9	1	29	1.37
23745402--23746291	68	13.1	68	99	0	1771	38	10	7	44	1.66
23766371--23766396	2	13.0	2	100	0	52	50	0	0	50	1.00
23772004--23772046	21	2.1	20	83	12	52	34	0	6	58	1.25
23776475--23776508	12	2.8	12	86	13	52	26	29	2	41	1.70
23782409--23782467	21	2.8	20	73	9	55	74	5	1	18	1.09
23783875--23783932	25	2.2	25	84	9	80	31	5	1	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23789540--23789637	51	1.9	51	82	0	124	34	12	29	23	1.91
23789811--23789875	33	2.0	33	90	0	103	46	21	10	21	1.82
23792109--23792255	13	10.8	13	72	13	64	34	18	2	44	1.61
23792121--23792181	29	2.1	28	85	8	79	32	14	4	47	1.66
23792109--23792219	42	2.6	42	89	0	177	36	17	2	44	1.63
23792195--23792255	26	2.3	26	85	0	77	36	21	0	42	1.53
23802308--23802363	28	2.0	28	82	6	69	26	7	16	50	1.70
23811619--23811685	31	2.2	31	100	0	134	20	14	13	50	1.77
23819431--23819526	48	2.0	48	100	0	192	31	20	18	29	1.97
23822785--23822832	17	2.8	16	78	12	51	37	0	16	45	1.48
23827737--23827779	19	2.1	21	83	8	54	41	0	0	58	0.98
23828572--23828601	15	2.0	15	93	0	51	56	0	10	33	1.32
23832708--23832765	12	5.1	12	83	8	59	1	12	12	74	1.16
23832731--23832766	6	6.0	6	100	0	72	0	16	16	66	1.25
23834426--23834468	17	2.4	18	84	3	52	4	27	4	62	1.35
23834440--23834482	17	2.5	17	85	7	52	4	27	4	62	1.35
23835072--23835115	20	2.2	20	87	0	61	29	36	20	13	1.91
23849751--23849791	17	2.4	17	87	0	55	53	4	0	41	1.22
23851891--23851920	2	15.0	2	92	0	51	46	0	3	50	1.18
23852688--23852735	17	2.9	17	79	17	57	29	20	12	37	1.90
23868184--23868242	17	3.4	17	71	17	57	57	6	1	33	1.35
23868189--23868241	19	2.9	18	71	17	56	56	5	1	35	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23868330--23868378	20	2.5	19	84	12	64	32	0	36	30	1.58
23868279--23868438	75	2.2	71	85	6	205	39	0	33	26	1.61
23870921--23870999	25	3.2	24	84	13	106	31	22	24	21	1.98
23876773--23876817	22	2.0	22	100	0	90	31	0	33	35	1.58
23882803--23882884	41	2.0	41	100	0	164	24	4	29	41	1.75
23885218--23885273	21	2.7	21	71	0	58	55	16	5	23	1.61
23889414--23889457	23	1.9	22	82	17	54	36	25	0	38	1.56
23889502--23889590	45	2.0	45	93	0	151	31	24	19	24	1.98
23902240--23902325	41	2.1	41	89	4	129	27	9	12	50	1.71
23903249--23903477	114	2.0	115	99	0	451	46	2	13	37	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145