genome.fa.s13.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  139  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45991266--45991360	7	14.0	7	69	20	60	43	27	2	27	1.66
45991259--45991300	20	2.0	21	95	4	77	38	30	4	26	1.77
45991269--45991360	13	6.8	13	70	16	55	44	26	2	27	1.66
45991267--45991360	20	4.7	18	73	17	64	43	26	2	27	1.66
45991569--45991603	18	1.9	18	88	0	52	51	0	0	48	1.00
45993606--45993635	15	2.0	15	100	0	60	20	6	6	66	1.38
45996998--45997032	18	2.0	18	94	5	63	17	45	25	11	1.81
46019586--46019623	15	2.4	16	95	4	69	18	5	10	65	1.41
46020308--46020350	23	1.9	23	90	4	70	13	11	2	72	1.22
46023255--46023312	17	3.1	17	75	18	53	48	6	0	44	1.29
46023369--46023632	138	1.9	138	90	4	419	36	6	7	49	1.56
46025212--46025842	315	2.0	315	99	0	1244	31	18	18	31	1.95
46029359--46029394	16	2.2	16	90	0	54	30	13	22	33	1.93
46030454--46030685	115	2.0	116	99	0	457	38	12	8	39	1.75
46030573--46030615	20	2.1	21	82	4	52	53	0	0	46	1.00
46040925--46040973	25	2.0	24	84	4	62	57	8	2	32	1.40
46044474--46044702	112	2.0	112	98	0	440	24	13	22	39	1.90
46055477--46055516	21	1.9	21	89	0	62	55	15	17	12	1.70
46061350--46061398	21	2.3	21	92	0	80	12	22	8	57	1.61
46061956--46062004	26	1.9	26	84	12	66	18	6	8	67	1.37
46062127--46062478	176	2.0	176	100	0	704	36	7	9	47	1.63
46071721--46071786	31	2.1	31	88	5	98	43	12	7	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46075285--46075318	16	2.1	17	88	5	52	55	0	2	41	1.15
46075377--46075633	127	2.0	128	99	0	507	36	17	7	38	1.78
46080328--46080375	14	3.3	14	85	8	60	25	6	4	64	1.35
46080993--46082244	625	2.0	626	99	0	2497	34	17	14	33	1.90
46082778--46082808	13	2.4	13	100	0	62	48	19	0	32	1.49
46083276--46083368	45	2.0	46	91	6	154	49	34	2	13	1.55
46104210--46104261	25	2.0	26	96	3	97	36	15	11	36	1.84
46123342--46123377	11	3.0	12	88	12	56	63	0	0	36	0.94
46130933--46131022	35	2.6	34	77	11	94	31	1	5	62	1.25
46131999--46132030	2	16.0	2	100	0	64	50	0	0	50	1.00
46133466--46133498	17	2.0	17	94	5	59	30	6	0	63	1.18
46141845--46141920	16	4.9	15	76	13	75	53	19	1	25	1.52
46141845--46141921	31	2.5	31	82	6	102	54	19	1	24	1.52
46144835--46144929	34	2.7	35	79	6	104	18	24	26	30	1.98
46174139--46174181	16	2.7	16	89	7	61	44	2	18	34	1.63
46177654--46177700	20	2.3	21	86	13	64	55	8	0	36	1.31
46180004--46180080	14	5.0	15	71	20	52	42	15	9	32	1.78
46180020--46180059	20	2.0	20	90	0	62	50	12	10	27	1.72
46180008--46180074	34	1.9	35	90	3	109	46	13	8	31	1.74
46180043--46180082	14	2.9	14	84	0	53	42	17	7	32	1.77
46183703--46183739	9	4.1	9	92	0	65	29	10	13	45	1.77
46191981--46192058	28	2.6	30	88	8	124	47	20	16	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46201817--46201860	21	2.0	22	91	4	72	38	15	11	34	1.84
46202727--46202751	2	12.5	2	100	0	50	52	0	0	48	1.00
46207880--46207904	2	12.5	2	100	0	50	48	0	0	52	1.00
46213318--46213355	17	2.2	18	85	4	51	21	2	2	73	1.07
46217082--46217341	56	4.6	56	100	0	520	47	23	5	23	1.73
46222343--46222493	77	2.0	77	93	0	257	29	31	11	27	1.91
46223480--46223589	54	2.0	54	100	0	220	36	16	5	41	1.71
46223749--46223810	30	2.1	30	84	3	81	12	22	24	40	1.89
46223763--46223829	30	2.3	29	87	7	91	11	22	25	40	1.88
46223900--46224035	67	2.0	67	95	0	245	25	6	22	46	1.75
46231108--46231286	34	5.1	34	63	27	90	24	5	24	45	1.74
46231118--46231290	35	4.9	35	65	24	114	25	5	24	45	1.74
46231079--46231290	70	3.0	70	97	1	390	26	5	22	46	1.73
46236270--46236481	70	3.0	70	97	1	399	44	23	6	25	1.77
46236329--46236438	35	3.1	35	64	23	95	45	24	4	25	1.72
46236308--46236418	36	3.1	36	63	23	90	45	22	6	26	1.76
46240741--46240849	34	3.1	34	64	23	91	44	24	7	23	1.79
46240761--46240870	35	3.1	34	64	23	84	42	20	8	28	1.81
46240737--46240877	70	2.0	70	98	0	273	44	22	6	26	1.76
46261360--46261907	190	2.9	188	83	5	622	29	17	19	33	1.95
46262036--46262077	20	2.1	20	100	0	84	23	14	38	23	1.92
46268380--46268406	12	2.2	12	100	0	54	44	40	0	14	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46269741--46269792	26	2.0	26	85	3	70	21	13	11	53	1.70
46269990--46270030	18	2.3	18	80	12	50	24	0	2	73	0.96
46271884--46271912	15	1.9	15	100	0	58	62	0	6	31	1.22
46271885--46271927	8	5.5	8	80	5	52	65	0	2	32	1.06
46271885--46271927	15	2.8	15	82	6	50	65	0	2	32	1.06
46273465--46273514	14	3.7	14	71	10	50	56	14	16	14	1.69
46273462--46273516	26	2.1	26	96	0	101	50	14	14	20	1.77
46292199--46292724	141	3.8	141	86	7	701	36	22	8	33	1.84
46312253--46312342	39	2.3	39	94	0	162	18	33	13	34	1.90
46313150--46313174	13	1.9	13	100	0	50	24	16	8	52	1.70
46322905--46322956	23	2.3	23	86	6	70	69	3	0	26	1.06
46322915--46322947	16	2.0	17	94	5	59	66	3	0	30	1.06
46332979--46333005	7	3.9	7	100	0	54	14	55	14	14	1.70
46334486--46334533	23	2.0	24	84	11	64	64	4	0	31	1.12
46360377--46360411	18	1.9	18	88	0	52	48	0	0	51	1.00
46360611--46360715	7	15.4	7	71	16	62	27	1	28	41	1.66
46360597--46360636	20	2.0	20	85	9	55	27	0	27	45	1.54
46360621--46360715	13	7.0	13	73	16	61	27	2	27	43	1.66
46360681--46360722	20	2.0	21	95	4	77	26	4	30	38	1.77
46367606--46367669	33	1.9	33	87	6	94	25	23	25	26	2.00
46370093--46370138	23	2.0	23	86	0	65	36	34	21	6	1.80
46371114--46371175	3	20.7	3	80	12	74	32	3	1	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46371220--46371247	4	7.0	4	100	0	56	0	25	0	75	0.81
46371945--46371991	24	2.0	24	91	0	76	40	4	2	53	1.32
46372044--46372071	4	7.0	4	100	0	56	0	25	0	75	0.81
46381826--46382293	189	2.5	189	90	2	708	31	16	19	33	1.94
46385856--46385893	16	2.4	16	95	0	67	52	0	0	47	1.00
46400313--46400345	13	2.5	13	95	5	57	54	6	6	33	1.50
46412457--46412514	29	2.0	29	96	0	107	25	3	10	60	1.45
46416236--46416270	16	2.2	16	100	0	70	48	20	5	25	1.71
46420951--46421002	15	3.4	15	68	5	50	26	23	30	19	1.98
46421033--46421072	21	1.9	21	94	0	71	47	30	17	5	1.69
46421320--46421479	80	2.0	80	98	0	311	33	16	14	36	1.89
46423467--46423518	26	2.0	26	81	7	61	26	11	5	55	1.58
46424003--46424059	25	2.3	26	81	9	73	70	8	8	12	1.35
46424203--46424248	7	6.3	7	85	9	65	30	56	10	2	1.46
46424209--46424263	15	3.7	15	79	16	60	32	56	7	3	1.44
46431822--46431927	55	1.9	56	98	1	205	45	9	12	33	1.74
46437858--46437902	19	2.3	20	96	3	83	80	6	8	4	1.03
46440552--46440609	16	3.7	15	75	13	55	29	22	24	24	1.99
46440544--46440608	31	2.1	31	91	0	103	29	27	23	20	1.98
46440657--46440706	21	2.4	21	100	0	100	32	36	22	10	1.87
46444175--46444325	78	1.9	78	91	0	248	27	22	21	27	1.99
46463001--46463033	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46471347--46471510	80	2.1	80	95	1	294	48	5	15	31	1.68
46472202--46472303	50	2.0	51	90	3	161	45	17	7	29	1.77
46477629--46477653	2	12.5	2	100	0	50	0	0	52	48	1.00
46484181--46484241	30	2.0	30	100	0	122	39	9	6	44	1.64
46494253--46494290	5	7.6	5	100	0	76	18	21	21	39	1.93
46504152--46504179	2	14.0	2	100	0	56	50	0	0	50	1.00
46505616--46505644	15	2.0	15	93	6	51	0	13	6	79	0.93
46506973--46506997	5	5.0	5	100	0	50	40	0	0	60	0.97
46506969--46507006	15	2.5	16	83	12	53	36	5	0	57	1.21
46514385--46514489	50	2.1	51	96	1	194	43	26	9	20	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145