genome.fa.s13.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  24  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9138825--9139135	88	3.4	85	76	12	266	32	16	19	30	1.95
9138825--9139695	51	18.6	49	72	13	458	32	17	20	29	1.95
9138823--9139556	45	15.8	45	73	11	432	32	16	20	29	1.95
9138822--9139643	96	8.9	96	77	10	635	32	17	20	29	1.95
9138955--9139232	141	2.0	141	89	2	434	33	15	19	31	1.93
9139011--9139563	181	3.0	180	83	7	669	33	16	20	29	1.95
9141319--9141387	3	23.0	3	85	5	95	30	1	1	66	1.09
9142166--9142234	3	23.0	3	85	5	95	30	1	1	66	1.09
9141193--9142886	847	2.0	847	99	0	3345	30	12	10	46	1.75
9145911--9145938	3	9.3	3	100	0	56	67	0	0	32	0.91
9145939--9145972	3	11.3	3	100	0	68	32	0	0	67	0.91
9153974--9154079	49	2.2	49	84	6	135	28	12	22	36	1.90
9157271--9157319	4	12.2	4	82	0	53	69	8	0	22	1.14
9162177--9162213	19	2.0	19	89	5	58	43	0	0	56	0.99
9162177--9162242	18	3.6	19	78	13	68	43	0	0	56	0.99
9162123--9162240	20	5.7	20	72	17	80	40	2	0	55	1.19
9168701--9168792	23	4.1	23	71	12	93	44	6	27	21	1.77
9168721--9168804	42	2.0	42	90	4	134	44	9	23	22	1.82
9172980--9173070	23	4.1	23	70	11	91	46	6	26	20	1.75
9173000--9173083	42	2.0	42	95	0	150	44	9	23	22	1.82
9184819--9184851	9	3.7	9	91	0	57	24	12	24	39	1.89
9184817--9184851	18	1.9	18	100	0	70	28	11	22	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9184957--9184999	21	2.0	21	82	8	52	20	37	0	41	1.53
9189619--9189681	21	3.0	21	100	0	126	28	14	19	38	1.90
9190894--9191373	160	3.0	160	98	0	915	45	7	25	21	1.78
9192298--9192356	29	2.0	29	93	0	100	28	10	25	35	1.89
9199353--9199393	18	2.3	18	91	0	64	48	2	4	43	1.37
9203663--9203784	23	5.3	23	80	0	154	19	21	26	32	1.97
9203665--9203784	46	2.6	46	90	0	186	19	21	26	32	1.97
9204013--9204045	15	2.1	16	88	5	50	45	0	12	42	1.41
9211088--9211168	23	3.5	23	100	0	162	18	20	30	29	1.97
9216015--9216059	21	2.3	19	84	7	54	44	20	24	11	1.83
9216101--9216340	101	2.4	101	92	0	390	27	25	16	30	1.96
9216191--9216326	33	4.1	33	69	7	94	29	27	15	27	1.96
9218263--9218320	11	5.1	11	75	8	53	65	5	0	29	1.14
9219672--9219815	44	3.3	44	95	0	252	38	6	11	43	1.65
9219747--9219814	21	3.1	21	66	22	59	41	5	5	47	1.52
9225786--9225956	88	1.9	88	82	5	202	38	19	8	33	1.82
9226145--9226209	19	3.4	19	75	19	55	63	0	3	33	1.10
9226431--9226504	31	2.4	33	77	13	84	37	0	1	60	1.05
9228627--9228717	23	4.1	23	78	7	98	36	21	20	20	1.95
9229041--9229090	25	2.0	25	84	11	66	34	22	0	44	1.53
9229941--9229972	12	2.6	13	85	14	50	0	0	18	81	0.70
9230010--9230042	13	2.4	14	90	10	50	63	0	3	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9232103--9232147	22	2.0	22	100	0	90	13	17	13	55	1.69
9247731--9248150	120	3.5	120	93	3	710	42	1	4	51	1.31
9247897--9248078	28	6.4	28	70	14	113	43	0	2	53	1.19
9249946--9251078	565	2.0	565	98	0	2194	37	18	11	33	1.86
9251568--9251625	19	3.1	19	100	0	116	32	20	15	31	1.94
9259343--9259417	6	12.5	6	95	4	118	0	16	0	84	0.63
9260387--9260447	18	3.5	17	81	16	72	78	1	8	11	1.02
9260390--9260440	25	2.1	24	85	10	68	80	1	5	11	0.97
9262942--9263004	24	2.6	24	73	9	65	31	22	26	19	1.97
9262958--9263036	27	3.0	27	78	8	67	32	20	29	17	1.95
9263156--9263216	24	2.5	24	83	0	68	27	21	31	19	1.97
9272602--9272670	31	2.2	31	89	0	102	43	15	5	34	1.71
9273565--9273624	26	2.3	27	97	2	113	41	8	0	50	1.33
9273758--9273844	4	20.0	4	78	17	52	67	1	31	0	0.98
9273746--9273851	35	3.2	32	76	14	108	64	0	34	0	1.00
9273770--9273824	18	2.9	18	74	15	58	61	1	36	0	1.06
9273789--9273894	45	2.4	44	87	7	151	68	1	28	0	1.06
9276459--9276485	11	2.5	11	100	0	54	37	7	14	40	1.74
9279683--9279776	27	3.5	26	77	12	91	18	31	24	25	1.97
9279699--9279783	27	3.1	27	84	0	116	15	34	24	25	1.95
9285127--9285180	27	2.0	27	100	0	108	51	3	11	33	1.55
9289358--9289425	24	2.7	27	77	13	81	54	2	0	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9293180--9293209	2	15.0	2	100	0	60	50	0	0	50	1.00
9293939--9294008	28	2.4	30	83	7	90	32	10	14	42	1.78
9296994--9297038	20	2.2	20	88	0	63	33	31	4	31	1.78
9302346--9302379	18	1.9	18	94	5	61	70	0	29	0	0.87
9302981--9303019	16	2.4	16	87	8	53	48	2	25	23	1.63
9305838--9305872	18	1.9	18	94	0	61	14	20	5	60	1.54
9306616--9306683	25	2.6	25	86	4	91	38	7	16	38	1.76
9311645--9311699	28	1.9	29	81	3	67	32	10	23	32	1.90
9312086--9312158	29	2.5	29	86	0	101	43	20	12	23	1.85
9313018--9313114	48	2.0	48	95	0	176	44	18	5	31	1.72
9318340--9318367	9	3.1	9	100	0	56	42	0	21	35	1.53
9319960--9320173	111	1.9	111	100	0	428	35	25	9	28	1.88
9331094--9331531	219	2.0	219	97	0	831	26	19	17	35	1.94
9334609--9334646	20	1.9	20	89	10	60	26	0	7	65	1.19
9335026--9335070	9	4.9	9	78	5	54	64	0	2	33	1.06
9335009--9335078	28	2.5	28	90	2	104	61	0	1	37	1.05
9341631--9341669	19	2.1	19	85	4	53	64	0	0	35	0.94
9343148--9343209	31	2.0	31	90	0	97	33	6	11	48	1.65
9343380--9343419	20	2.1	19	86	9	55	30	10	5	55	1.54
9343760--9343868	53	2.1	53	98	0	209	22	20	12	44	1.85
9355491--9355555	23	3.0	22	73	10	62	55	4	1	38	1.30
9355709--9355782	17	4.8	14	74	19	58	62	2	2	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9355728--9355782	15	3.6	15	79	15	51	61	0	3	34	1.13
9355810--9355843	17	1.9	18	94	5	61	44	2	0	52	1.16
9357080--9357127	21	2.3	22	82	13	57	41	2	2	54	1.24
9358591--9358662	30	2.4	30	77	9	74	34	0	0	65	0.93
9359083--9359140	22	2.8	19	73	19	53	34	12	1	51	1.49
9359579--9359856	107	2.6	107	92	0	457	29	20	16	33	1.95
9360004--9360034	15	2.1	15	93	0	53	19	6	6	67	1.35
9360455--9360498	23	1.9	23	90	0	70	18	20	22	38	1.93
9369623--9369647	13	1.9	13	100	0	50	16	8	4	72	1.24
9373644--9373683	15	2.7	14	85	11	53	47	2	2	47	1.29
9375996--9376114	53	2.3	53	97	1	222	42	31	10	15	1.81
9383038--9383079	22	1.9	22	100	0	84	26	23	4	45	1.73
9385123--9385173	25	2.0	25	100	0	102	19	13	19	47	1.83
9388363--9388503	21	6.8	21	73	1	104	43	17	20	19	1.88
9388347--9388459	42	2.7	42	83	2	138	40	18	23	16	1.91
9396314--9397715	701	2.0	701	100	0	2804	31	18	14	34	1.91
9400893--9400922	14	2.1	14	93	0	51	30	13	33	23	1.93
9414613--9414683	36	1.9	36	82	2	88	42	8	18	30	1.80
9414736--9414774	17	2.2	18	86	4	53	48	2	2	46	1.29
9427734--9427947	107	2.0	107	98	1	412	47	15	7	28	1.73
9427921--9427978	20	2.9	21	82	10	84	70	1	1	25	1.06
9427923--9427984	11	6.0	11	68	21	53	70	1	1	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9427921--9427984	19	3.3	19	79	14	76	70	1	1	26	1.05
9427956--9428011	27	2.1	26	83	9	69	66	3	3	26	1.25
9428248--9428292	21	2.1	21	84	8	56	26	4	4	64	1.32
9428927--9428967	19	2.2	19	86	4	57	51	7	2	39	1.43
9435741--9435795	22	2.5	22	100	0	110	45	7	12	34	1.70
9458659--9458696	18	2.2	18	90	9	62	71	2	5	21	1.19
9461419--9461460	21	2.0	21	100	0	84	14	19	28	38	1.90
9469592--9469648	25	2.3	24	85	8	78	68	8	7	15	1.37
9472008--9472047	20	2.0	20	90	0	62	27	10	12	50	1.72
9471993--9472059	34	1.9	35	87	3	100	29	8	14	46	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145