genome.fa.s13.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  136  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44736644--44736929	137	2.1	138	95	2	522	46	15	8	28	1.76
44738060--44738141	25	3.3	24	73	13	76	31	23	25	19	1.98
44738071--44738199	25	5.2	24	74	5	80	36	20	27	16	1.93
44738061--44738200	50	2.8	50	83	4	149	35	20	25	18	1.96
44740636--44740829	85	2.3	86	84	2	275	26	18	21	34	1.96
44751795--44751854	9	6.8	9	72	9	52	0	15	11	73	1.10
44751791--44751855	27	2.4	27	87	5	96	0	15	10	73	1.08
44759519--44759725	25	8.3	25	76	2	166	27	15	20	36	1.93
44764944--44765182	124	1.9	124	100	0	478	37	20	12	29	1.90
44772447--44772515	20	3.1	24	68	20	76	31	8	13	46	1.73
44773877--44773911	16	2.2	16	90	10	54	65	0	0	34	0.93
44774578--44774602	10	2.5	10	100	0	50	32	0	0	68	0.90
44774565--44774641	30	2.7	27	75	24	70	31	1	3	63	1.20
44774800--44774869	9	7.8	9	79	20	76	31	0	1	67	1.00
44774805--44774859	29	1.9	28	88	3	83	34	0	0	65	0.93
44778558--44778902	172	2.0	173	99	0	683	44	11	12	31	1.77
44780915--44780951	19	1.9	19	88	0	56	35	5	0	59	1.20
44781005--44781088	42	2.0	42	88	4	125	38	14	20	27	1.91
44792336--44792373	18	2.1	18	90	5	58	31	0	0	68	0.90
44796631--44796940	106	2.9	107	92	2	507	29	18	17	33	1.94
44801627--44801815	96	2.0	97	91	1	308	28	16	7	46	1.75
44802623--44802934	132	2.4	132	93	0	525	30	18	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44806184--44806208	1	25.0	1	100	0	50	100	0	0	0	0.00
44807453--44807485	2	16.5	2	93	0	57	45	0	0	54	0.99
44808636--44808728	36	2.3	40	73	19	95	38	17	18	25	1.92
44808642--44808721	36	2.2	36	86	0	115	41	17	16	25	1.89
44817655--44817692	14	2.7	14	87	0	58	39	5	2	52	1.38
44818553--44818664	55	2.0	55	100	0	224	34	12	11	41	1.79
44820648--44820736	42	2.1	42	89	0	133	38	13	21	26	1.91
44820660--44820748	42	2.1	42	87	0	124	40	12	21	25	1.88
44828474--44828537	6	10.5	6	83	9	85	81	0	0	18	0.70
44828474--44828538	29	2.4	27	92	7	105	80	0	0	20	0.72
44835006--44835332	167	2.0	167	87	3	471	38	13	10	37	1.80
44838070--44838117	20	2.4	21	76	20	57	62	2	0	35	1.07
44838080--44838116	20	1.9	19	89	10	58	64	2	0	32	1.07
44838173--44838197	2	12.5	2	100	0	50	52	0	0	48	1.00
44842071--44842111	2	20.5	2	84	0	55	41	0	7	51	1.30
44854739--44854792	21	2.6	21	81	0	63	35	1	9	53	1.44
44861006--44861053	21	2.3	21	88	0	69	25	10	52	12	1.71
44869587--44869913	16	19.1	16	74	18	204	46	20	0	33	1.51
44869587--44869902	9	36.7	9	74	17	230	46	20	0	32	1.51
44869596--44869898	25	14.9	20	69	21	79	46	20	0	32	1.51
44869613--44869713	31	3.2	32	81	12	111	46	17	0	35	1.49
44869701--44869947	50	4.8	50	84	5	266	46	20	0	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44869718--44869898	25	7.0	25	84	7	135	47	20	0	32	1.50
44875762--44875859	43	2.3	43	85	5	135	30	16	25	27	1.96
44891239--44891383	43	3.4	43	88	0	184	30	15	28	25	1.96
44900392--44900458	34	2.0	34	87	0	98	50	8	17	22	1.74
44913585--44913619	17	2.1	17	94	0	61	45	5	14	34	1.68
44922255--44922339	9	9.4	9	86	0	116	37	25	12	23	1.91
44922379--44922407	6	4.8	6	100	0	58	17	0	17	65	1.27
44931863--44931901	18	2.2	18	85	0	51	30	5	12	51	1.62
44943251--44943338	3	29.0	3	72	13	56	63	3	4	28	1.30
44943243--44943288	24	2.0	23	82	4	56	60	2	8	28	1.38
44947746--44947791	20	2.2	21	78	21	53	32	8	4	54	1.51
44948322--44948753	220	2.0	219	95	1	776	28	16	12	42	1.85
44953280--44953317	20	1.9	20	94	0	67	39	0	2	57	1.12
44969501--44969541	19	2.2	19	86	0	55	26	2	0	70	0.99
44970644--44970681	18	2.1	18	95	0	67	42	42	15	0	1.47
44970647--44970685	6	6.5	6	93	0	60	38	43	17	0	1.50
44975811--44975849	13	3.0	13	81	11	53	38	12	10	38	1.78
44976061--44976112	15	3.4	15	75	15	61	50	1	1	46	1.23
44991390--44991439	26	1.9	26	91	0	82	24	16	20	40	1.91
44995961--44996015	28	2.0	28	92	3	94	43	9	0	47	1.35
44997644--44997735	27	3.4	27	96	1	166	50	0	9	40	1.36
44998048--44998103	23	2.4	23	100	0	112	33	8	21	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44998171--44998207	9	4.1	9	89	0	56	45	10	10	32	1.74
44998251--44998646	198	2.0	198	100	0	792	20	28	25	25	1.99
44998637--44998694	27	2.1	27	87	0	80	65	1	1	31	1.13
45000411--45000450	20	1.9	21	85	10	55	22	27	0	50	1.50
45006756--45006817	25	2.5	25	86	0	79	29	19	22	29	1.98
45010529--45010566	9	4.2	9	100	0	76	44	0	34	21	1.52
45018863--45018914	6	8.5	6	82	16	54	75	0	1	23	0.91
45018863--45018916	16	3.5	16	75	17	60	74	0	1	24	0.92
45018870--45018936	25	2.7	26	81	6	84	71	0	4	23	1.04
45025445--45025606	46	3.6	46	89	5	251	29	23	13	33	1.93
45025675--45025719	19	2.4	19	88	7	65	44	11	0	44	1.39
45030391--45030506	46	2.6	45	84	4	155	28	21	14	35	1.93
45035122--45035151	3	10.0	3	100	0	60	33	0	0	66	0.92
45035325--45035366	22	1.9	22	85	0	57	42	2	2	52	1.27
45035580--45035627	21	2.3	20	82	7	60	27	18	4	50	1.65
45035788--45036195	109	3.8	109	92	1	651	29	16	19	33	1.94
45038636--45038698	27	2.3	27	86	0	81	22	31	31	14	1.93
45043081--45043458	188	2.0	189	99	0	749	38	7	11	42	1.70
45044007--45044036	11	2.7	11	100	0	60	20	0	6	73	1.05
45056784--45056841	29	2.0	30	96	3	109	48	18	8	24	1.76
45057037--45057063	14	1.9	14	100	0	54	37	14	18	29	1.91
45064616--45064674	25	2.4	25	82	0	73	32	16	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45100837--45100871	15	2.4	15	90	4	54	48	0	8	42	1.33
45105531--45105593	25	2.5	25	73	0	63	25	15	22	36	1.94
45107787--45107841	18	3.1	18	67	0	56	27	5	9	58	1.51
45117139--45117167	13	2.1	14	93	6	51	51	0	3	44	1.18
45118135--45118175	16	2.6	16	100	0	82	39	4	31	24	1.76
45118165--45118253	44	2.0	46	91	4	146	26	5	31	35	1.80
45118165--45118270	39	2.5	44	82	11	123	29	4	31	34	1.78
45118294--45118329	15	2.5	15	95	4	65	36	25	13	25	1.93
45121126--45121192	35	1.9	35	90	0	107	50	17	7	23	1.71
45126275--45126304	6	5.0	6	100	0	60	83	0	0	16	0.65
45127133--45127413	141	2.0	140	95	0	508	33	18	2	44	1.65
45127653--45127709	5	11.6	5	75	20	50	56	3	1	38	1.27
45127660--45127731	34	2.2	32	85	14	94	55	5	1	37	1.32
45128522--45128578	5	11.6	5	75	20	50	56	3	1	38	1.27
45128529--45128600	34	2.2	32	85	14	94	55	5	1	37	1.32
45137352--45137445	40	2.3	40	92	0	152	30	21	25	22	1.98
45137594--45137634	14	2.9	14	92	3	64	31	0	29	39	1.57
45141117--45141466	43	8.3	42	83	6	298	25	15	28	31	1.95
45141117--45141432	125	2.5	126	80	6	327	26	14	28	30	1.95
45141117--45141433	168	1.9	170	80	7	376	26	14	28	30	1.95
45142127--45142194	34	2.0	34	91	0	109	26	22	5	45	1.75
45158939--45159081	72	2.0	72	92	0	241	34	18	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45160826--45160968	72	2.0	72	92	0	241	34	18	20	27	1.95
45169990--45170309	131	2.4	131	85	3	426	26	23	20	29	1.99
45170362--45170523	50	3.2	50	76	3	164	28	20	18	32	1.96
45170362--45170541	100	1.8	100	86	0	261	27	22	18	31	1.97
45174946--45175086	73	1.9	73	86	2	203	34	17	17	30	1.93
45176490--45176522	2	16.5	2	100	0	66	51	0	0	48	1.00
45179690--45179733	18	2.4	18	85	7	54	6	11	9	72	1.27
45181337--45181649	46	6.9	46	97	1	578	28	22	16	32	1.96
45184670--45184721	26	2.0	26	85	7	70	34	3	0	61	1.14
45187713--45187783	9	7.8	9	78	9	63	40	30	8	19	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145