genome.fa.s13.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  59  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20408106--20408174	30	2.3	30	85	7	88	21	36	1	40	1.63
20412314--20412389	40	1.9	40	100	0	152	39	5	26	28	1.78
20413248--20413319	16	4.5	16	83	0	99	38	6	27	26	1.82
20413301--20413393	44	2.1	44	90	6	143	36	4	22	36	1.74
20413664--20413710	23	2.0	24	95	4	87	53	12	0	34	1.39
20416549--20416598	25	2.0	25	100	0	100	36	8	36	20	1.82
20418509--20418608	51	2.0	51	95	0	182	11	16	22	51	1.75
20418873--20419077	21	9.5	21	70	13	123	20	8	13	57	1.62
20422011--20422143	29	4.6	29	77	0	140	24	30	24	19	1.98
20427034--20427087	20	2.8	20	71	23	51	42	1	9	46	1.46
20427847--20427916	36	1.9	36	88	0	104	35	10	24	30	1.88
20433069--20433138	35	2.0	35	100	0	140	11	31	0	57	1.34
20435055--20435081	12	2.2	12	100	0	54	44	7	18	29	1.77
20436109--20436180	22	3.4	22	68	12	60	50	2	4	43	1.36
20437725--20437971	122	2.0	122	93	0	422	40	14	15	29	1.88
20439147--20439198	27	1.9	27	88	0	77	51	1	1	44	1.23
20440028--20440122	23	4.2	22	65	30	58	40	1	18	40	1.58
20440003--20440138	67	2.0	67	100	0	272	37	1	19	41	1.60
20440044--20440137	23	4.2	23	62	32	60	37	1	20	41	1.59
20442319--20442355	18	2.1	18	90	5	58	45	5	16	32	1.70
20451086--20451120	18	1.9	18	88	0	52	71	8	2	17	1.23
20458677--20458715	13	3.2	13	89	10	57	48	0	15	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20459384--20459445	16	3.9	16	89	0	88	37	1	35	25	1.66
20459374--20459443	32	2.2	32	92	0	113	34	1	34	30	1.67
20459675--20459709	18	2.0	17	88	5	52	54	0	0	45	0.99
20473391--20473459	34	2.0	34	97	0	129	33	11	13	42	1.80
20505284--20505419	32	4.3	32	84	4	168	37	19	19	22	1.94
20505298--20505419	64	1.9	64	89	3	192	36	19	20	23	1.95
20505614--20505678	24	2.7	25	88	4	89	38	21	9	30	1.85
20505697--20505924	27	8.4	27	86	0	267	25	25	18	31	1.98
20505703--20505952	54	4.6	54	81	4	191	24	23	18	32	1.97
20505702--20505978	81	3.4	81	83	4	303	23	23	18	34	1.96
20505919--20506046	27	4.8	28	80	6	140	21	17	18	42	1.89
20505911--20506046	53	2.5	55	77	9	154	21	18	18	41	1.90
20511131--20511165	17	2.0	17	88	5	52	11	22	42	22	1.85
20511357--20511601	27	9.1	27	82	1	269	43	20	15	20	1.88
20511364--20511606	81	3.0	80	84	2	317	42	20	15	20	1.88
20511649--20511721	24	3.0	24	91	0	119	26	6	20	46	1.75
20511905--20512075	32	5.4	32	90	0	236	21	19	20	38	1.94
20515842--20515882	19	2.3	17	87	8	55	75	0	7	17	1.02
20517180--20517236	24	2.4	23	81	16	64	8	3	14	73	1.20
20517899--20518157	44	5.9	44	80	3	191	31	20	16	30	1.95
20517756--20518155	88	4.5	88	74	8	310	29	19	18	32	1.95
20518138--20518247	50	2.2	50	91	0	175	31	23	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20519470--20519522	23	2.3	23	90	0	88	30	28	20	20	1.98
20532934--20532973	21	2.0	20	85	5	53	20	22	5	52	1.65
20537608--20537638	13	2.4	13	94	0	53	61	0	12	25	1.32
20537812--20537841	2	15.0	2	100	0	60	50	0	0	50	1.00
20543195--20543253	6	9.8	6	100	0	118	33	0	16	49	1.47
20544538--20544653	44	2.7	43	80	14	139	30	27	18	23	1.98
20546169--20546268	42	2.4	41	83	12	123	17	27	34	22	1.95
20547943--20547989	24	1.9	24	86	4	67	36	0	38	25	1.56
20548658--20548740	27	3.1	27	82	3	105	42	16	20	20	1.90
20548675--20548964	27	10.8	27	78	6	257	35	18	21	24	1.95
20548704--20548964	54	4.9	54	80	7	289	35	19	20	24	1.95
20549153--20549212	27	2.2	27	82	11	70	23	25	20	31	1.98
20549166--20549218	27	2.0	27	81	7	63	24	26	18	30	1.98
20549256--20549495	32	7.5	32	75	10	161	19	20	22	37	1.94
20549382--20549502	64	1.9	63	94	0	197	20	19	23	36	1.95
20560592--20560628	18	2.0	19	94	5	67	5	43	0	51	1.24
20564352--20564435	42	2.0	42	100	0	168	40	19	21	19	1.92
20591002--20591040	3	13.0	3	100	0	78	33	0	0	66	0.92
20592858--20592908	4	12.8	4	75	8	50	27	1	0	70	0.98
20592854--20592989	29	4.9	28	74	16	115	24	5	0	69	1.16
20594733--20594819	6	14.0	6	92	7	147	18	0	1	80	0.78
20595433--20595461	14	2.1	14	100	0	58	20	20	6	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20601233--20601277	22	2.0	22	86	4	63	37	17	6	37	1.76
20601256--20601368	19	5.8	19	89	4	181	37	14	9	38	1.79
20602242--20602302	31	2.0	31	83	6	79	57	6	9	26	1.55
20602939--20602972	7	4.9	7	96	0	59	8	0	2	88	0.62
20602939--20602980	21	2.0	21	85	0	57	11	2	2	83	0.84
20605775--20605916	70	2.0	70	97	0	266	31	15	15	37	1.89
20611119--20611239	60	2.0	60	95	0	215	31	26	5	36	1.80
20611369--20611416	25	2.0	24	95	4	87	41	0	0	58	0.98
20615185--20615244	27	2.3	27	80	8	70	50	6	5	38	1.51
20620348--20620391	22	2.0	22	91	4	72	40	13	4	40	1.65
20620144--20620369	44	5.1	44	100	0	452	38	13	6	41	1.71
20621704--20621729	5	5.2	5	100	0	52	19	19	19	42	1.90
20621753--20621803	13	3.9	13	86	0	75	41	23	9	25	1.85
20628138--20628167	8	3.9	8	91	8	53	26	26	20	26	1.99
20628138--20628168	15	2.1	15	100	0	62	25	25	19	29	1.99
20628730--20628768	8	5.1	8	96	3	64	53	25	0	20	1.45
20635955--20635998	23	1.9	23	85	0	61	63	0	4	31	1.14
20636577--20636615	20	1.9	21	84	5	53	61	2	5	30	1.31
20644258--20644283	7	3.7	7	100	0	52	30	0	0	69	0.89
20647097--20647132	18	2.0	18	94	0	63	25	16	8	50	1.73
20648807--20648838	12	2.7	12	100	0	64	31	15	0	53	1.43
20653937--20654239	151	2.0	150	89	5	461	44	3	11	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20654729--20654792	10	6.1	10	75	13	58	18	4	4	71	1.21
20654755--20654785	16	1.9	16	93	0	53	22	3	6	67	1.28
20659337--20659422	30	2.8	30	77	8	86	38	8	17	36	1.79
20659800--20659847	23	2.1	23	84	3	62	43	0	4	52	1.20
20659866--20659890	11	2.3	11	100	0	50	48	8	16	28	1.74
20660081--20660178	45	2.2	44	89	8	146	34	27	4	33	1.76
20661372--20661400	14	2.0	15	93	6	51	55	13	13	17	1.70
20667722--20667955	102	2.3	101	85	2	326	23	18	26	30	1.98
20667722--20667965	51	4.8	51	79	3	260	23	18	27	29	1.98
20672296--20672335	20	2.0	20	85	0	53	55	0	22	22	1.44
20672326--20672353	7	4.0	7	100	0	56	85	0	0	14	0.59
20681356--20681400	19	2.3	21	85	14	69	35	2	0	62	1.08
20684842--20684866	11	2.3	11	100	0	50	56	16	12	16	1.68
20688164--20688199	16	2.2	17	90	5	56	61	0	5	33	1.19
20688376--20688440	31	2.1	31	85	0	85	32	7	12	47	1.69
20694075--20694178	36	2.9	36	97	0	190	39	9	19	31	1.84
20694102--20694163	21	3.2	21	61	25	55	35	9	19	35	1.85
20702056--20702096	21	2.0	21	85	0	55	41	9	12	36	1.76
20707177--20707233	28	2.0	28	87	12	82	35	0	21	43	1.52
20713606--20713719	42	2.7	42	78	15	128	15	21	17	45	1.85
20715394--20715422	13	2.1	14	93	6	51	62	6	10	20	1.50
20727797--20727834	17	2.2	18	95	4	69	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20736954--20736994	20	2.0	20	85	0	55	14	14	24	46	1.82
20737861--20737903	20	2.2	20	95	0	77	30	11	34	23	1.90
20742173--20742647	236	2.0	236	94	0	842	33	17	18	30	1.94
20742912--20742958	24	2.0	24	83	8	60	34	2	2	61	1.20
20743193--20743241	16	3.1	16	87	0	71	30	32	0	36	1.58
20745693--20745726	6	5.7	6	96	0	59	38	11	0	50	1.39
20745783--20745822	2	20.5	2	94	5	73	50	0	0	50	1.00
20746929--20747572	321	2.0	321	99	0	1272	43	10	9	36	1.72
20752585--20752999	49	8.5	49	82	2	422	24	25	16	33	1.96
20752588--20752996	147	2.8	147	85	0	550	24	25	16	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145