genome.fa.s13.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  88  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30062527--30062592	27	2.4	28	80	10	82	15	16	0	68	1.22
30062633--30062674	21	2.0	22	85	4	59	9	16	0	73	1.08
30062642--30062671	15	1.9	16	93	6	53	6	13	0	80	0.91
30062605--30062658	6	9.0	6	79	0	63	3	20	0	75	0.95
30076743--30076781	20	2.0	20	94	0	69	30	10	12	46	1.75
30087631--30087677	13	3.6	13	85	8	69	76	6	4	12	1.12
30088574--30088681	21	5.1	21	77	10	105	67	0	23	8	1.23
30088589--30088636	15	3.3	14	82	8	60	79	0	16	4	0.89
30089796--30089872	38	2.0	39	97	2	147	32	12	15	38	1.86
30096898--30096948	15	3.5	13	80	19	57	74	0	21	3	0.98
30096964--30097010	20	2.3	21	85	3	60	68	4	19	8	1.33
30096964--30097017	21	2.6	21	80	8	65	62	5	20	11	1.47
30099951--30099975	10	2.5	10	100	0	50	20	32	20	28	1.97
30103567--30103595	14	2.1	14	93	6	51	20	0	3	75	0.94
30104287--30104316	10	3.0	10	95	0	51	33	10	40	16	1.82
30104775--30105236	245	1.9	245	97	0	870	27	18	18	35	1.94
30106444--30107430	132	7.5	132	93	0	1643	28	23	19	28	1.98
30106664--30106844	44	4.1	45	65	12	97	28	23	19	27	1.99
30107986--30108074	40	2.3	39	80	3	97	35	16	2	44	1.61
30108026--30108076	26	2.0	26	84	7	68	35	23	0	41	1.55
30108565--30108618	20	2.7	20	94	0	90	31	7	9	51	1.61
30111895--30111920	9	2.9	9	100	0	52	53	0	11	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30115091--30115130	21	1.9	21	89	0	62	45	32	17	5	1.70
30119677--30119723	25	1.9	24	83	12	60	34	8	17	40	1.79
30121628--30121668	22	1.9	21	85	14	57	14	14	2	68	1.32
30132434--30132680	50	4.8	50	79	4	219	23	28	20	27	1.99
30142973--30142999	13	2.1	13	100	0	54	22	14	14	48	1.81
30144702--30144766	30	2.2	30	85	0	85	21	24	29	24	1.99
30146459--30146490	12	2.7	12	100	0	64	21	34	25	18	1.96
30149604--30149638	15	2.3	15	90	0	52	17	20	22	40	1.92
30160687--30160753	21	3.2	21	87	2	91	11	23	8	55	1.64
30169656--30169689	7	4.7	7	88	3	50	17	2	0	79	0.86
30174103--30174261	43	3.7	43	77	10	173	25	18	26	30	1.98
30178064--30178103	6	6.3	6	88	5	53	17	7	0	75	1.03
30178612--30178654	17	2.4	18	84	7	52	30	41	6	20	1.79
30184264--30184320	17	3.6	16	73	17	57	36	3	1	57	1.26
30185863--30186047	101	1.8	102	83	3	248	24	19	25	30	1.98
30185863--30186055	102	1.9	101	82	3	244	24	19	25	29	1.99
30186051--30186149	46	2.2	43	81	12	110	23	18	25	33	1.97
30186272--30186303	16	2.0	16	93	0	55	59	0	15	25	1.36
30191582--30191708	50	2.5	50	79	0	137	25	21	31	21	1.98
30197609--30197667	22	2.7	22	97	0	109	27	10	15	47	1.77
30216627--30216669	18	2.5	17	82	17	54	18	2	4	74	1.10
30216629--30216669	16	2.4	16	88	8	55	17	2	4	75	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30216579--30216636	6	9.8	6	94	1	91	20	0	13	65	1.26
30216576--30216654	12	6.7	12	84	4	72	20	0	11	68	1.20
30221814--30221851	2	19.0	2	88	0	58	47	5	47	0	1.24
30221931--30221990	18	3.2	18	73	19	50	36	1	3	58	1.25
30227467--30228068	294	2.0	295	98	0	1179	49	8	8	33	1.63
30229640--30229673	2	17.0	2	100	0	68	50	0	0	50	1.00
30237559--30237696	50	2.6	52	85	7	183	23	31	21	24	1.98
30245460--30245526	20	3.4	19	82	13	91	23	26	11	37	1.90
30245489--30245530	10	4.2	10	84	9	59	21	23	11	42	1.86
30247733--30247761	10	3.0	10	95	5	51	20	20	10	48	1.79
30253721--30253787	20	3.4	19	80	13	82	23	28	11	35	1.91
30253750--30253791	10	4.2	10	78	9	50	21	26	11	40	1.88
30263622--30263664	22	2.0	21	81	4	50	51	9	18	20	1.74
30268285--30268550	40	6.7	40	85	1	309	19	31	16	32	1.94
30268281--30268550	120	2.2	120	84	1	353	20	30	17	32	1.95
30278136--30278179	15	2.9	15	96	0	79	31	9	25	34	1.87
30278576--30278621	21	2.2	21	88	0	65	23	19	34	21	1.96
30286751--30286794	22	2.0	21	83	12	54	40	0	0	59	0.98
30286777--30286910	70	1.9	72	93	3	236	33	5	8	52	1.53
30287217--30287246	15	1.9	16	93	6	53	43	6	13	36	1.70
30291362--30291644	138	2.1	137	90	2	442	45	6	6	41	1.55
30291621--30291767	75	2.0	74	84	1	195	30	14	9	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30308552--30308583	15	2.2	15	94	5	57	31	3	0	65	1.08
30310957--30311038	25	3.2	25	78	1	74	23	18	12	46	1.82
30310996--30311052	25	2.3	25	81	6	71	24	15	19	40	1.90
30312741--30312767	7	3.9	7	100	0	54	14	11	0	74	1.08
30314281--30315229	479	2.0	480	95	0	1711	36	7	17	38	1.78
30316207--30316325	57	2.1	57	95	0	211	25	17	25	31	1.97
30326957--30327084	32	4.0	32	87	2	186	37	20	21	21	1.94
30327256--30327385	24	5.4	24	81	0	107	46	22	7	23	1.78
30327270--30327377	48	2.2	48	81	0	126	46	22	8	23	1.78
30327294--30327390	24	4.0	24	83	0	122	45	19	7	27	1.77
30327407--30327791	27	14.3	27	69	11	148	22	20	19	37	1.94
30327411--30327742	54	6.2	54	75	4	285	22	20	19	37	1.94
30327407--30327742	108	3.1	108	83	6	407	23	20	19	37	1.94
30327596--30327791	80	2.4	81	82	4	225	23	20	19	36	1.95
30330797--30330830	17	2.0	17	88	0	50	20	11	5	61	1.50
30358320--30358564	29	8.4	29	78	8	205	22	26	13	37	1.91
30358407--30358708	58	5.2	58	76	4	268	26	27	11	34	1.91
30358305--30358506	88	2.3	87	79	6	212	24	27	13	35	1.92
30358320--30358708	116	3.3	116	80	1	413	25	26	12	35	1.92
30358552--30358708	29	5.4	29	85	0	215	29	27	10	33	1.89
30358549--30358708	87	1.8	87	87	0	239	29	28	10	32	1.89
30360586--30360619	16	2.1	17	88	5	52	32	17	8	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30364238--30364281	21	2.1	21	100	0	88	36	18	9	36	1.82
30364243--30364300	21	2.8	21	84	7	66	34	13	12	39	1.82
30366937--30367221	50	5.7	50	89	0	392	20	30	22	26	1.98
30371039--30371069	6	5.2	6	92	0	53	32	0	3	64	1.09
30376865--30377008	51	2.9	49	82	6	182	33	21	18	27	1.96
30398798--30398857	25	2.4	25	77	2	68	25	21	20	33	1.97
30399266--30399404	69	2.0	69	97	0	260	23	15	20	41	1.90
30400381--30400427	20	2.4	19	80	19	53	38	2	12	46	1.54
30404342--30404383	16	2.6	16	84	0	57	57	4	23	14	1.56
30408629--30408733	9	11.8	9	72	17	85	32	5	0	61	1.19
30408629--30408700	19	3.8	19	83	10	78	29	6	0	63	1.20
30408707--30409068	180	2.0	181	99	0	717	42	10	6	41	1.64
30410396--30410423	14	2.0	14	100	0	56	7	21	28	42	1.79
30410332--30410595	86	2.8	100	79	19	357	26	20	24	29	1.99
30410410--30410633	43	5.2	43	100	0	448	25	18	25	31	1.97
30423396--30423571	41	4.3	41	91	1	273	37	28	17	16	1.91
30425025--30425063	20	2.0	20	84	0	51	30	10	15	43	1.80
30425049--30425188	74	1.9	73	82	11	178	27	15	15	41	1.88
30426964--30427057	41	2.3	41	90	0	143	29	23	22	24	1.99
30427596--30427763	88	1.9	89	91	1	275	23	1	30	44	1.63
30427731--30427767	7	5.1	7	90	3	56	5	0	56	37	1.22
30428987--30429012	11	2.4	11	100	0	52	0	7	7	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30430614--30430641	2	14.0	2	100	0	56	50	0	0	50	1.00
30430674--30430702	2	14.5	2	100	0	58	48	0	0	51	1.00
30432080--30432266	43	4.4	42	81	10	132	26	18	27	27	1.98
30432106--30432437	43	7.7	43	86	4	393	24	17	31	26	1.97
30437476--30437532	22	2.6	22	100	0	114	47	21	3	28	1.67
30439616--30439910	151	2.0	151	97	0	563	28	17	16	37	1.91
30445797--30445961	68	2.4	68	80	5	190	36	18	19	25	1.94
30455506--30455927	27	15.6	27	82	5	417	19	19	20	40	1.91
30455517--30455907	81	4.8	80	84	5	484	18	19	19	41	1.90
30458361--30458470	39	2.8	41	80	6	138	41	20	17	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145