genome.fa.s13.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  11  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4455068--4455119	18	2.6	21	71	22	58	25	42	17	15	1.88
4467772--4467796	6	4.2	6	100	0	50	16	0	36	48	1.46
4474126--4474154	15	1.9	15	100	0	58	48	0	13	37	1.43
4479703--4479760	29	1.9	30	83	13	75	51	6	5	36	1.51
4490628--4490677	26	2.0	26	88	11	77	44	0	14	42	1.44
4495915--4495965	24	2.1	24	92	0	84	37	9	17	35	1.83
4499666--4499706	22	1.9	21	85	5	55	36	17	2	43	1.62
4500023--4500059	15	2.4	15	90	4	56	48	8	0	43	1.32
4499998--4500044	19	2.5	20	82	10	62	48	8	0	42	1.33
4500003--4500038	10	3.8	9	92	7	54	44	11	0	44	1.39
4506853--4506902	26	1.9	26	100	0	100	42	8	16	34	1.77
4521311--4521426	50	2.3	50	79	5	126	32	21	22	23	1.98
4521311--4521419	25	4.4	25	75	13	80	33	22	21	22	1.97
4530510--4530566	29	2.0	28	89	3	87	26	22	17	33	1.96
4539056--4539083	14	2.0	14	100	0	56	14	14	28	42	1.84
4550036--4550233	102	1.9	102	93	2	344	31	28	19	20	1.97
4550138--4550273	42	3.5	40	75	18	151	33	26	18	21	1.96
4550138--4550281	75	1.9	75	95	0	261	34	26	18	20	1.95
4558396--4558448	27	2.0	26	96	3	97	28	33	22	15	1.94
4559713--4559804	33	2.7	34	78	6	80	26	25	16	32	1.96
4563587--4563632	13	3.4	13	84	6	56	23	4	0	71	1.03
4563618--4563675	20	3.2	19	75	25	70	17	12	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4563604--4563674	35	2.0	36	89	5	110	18	9	0	71	1.12
4572516--4572631	53	2.2	51	80	11	135	28	9	25	36	1.87
4579892--4579955	4	16.0	4	93	0	110	50	0	23	26	1.50
4593892--4594042	53	2.9	52	78	12	148	35	31	9	23	1.88
4606742--4606852	38	2.9	38	80	11	106	34	7	2	55	1.41
4607431--4607563	69	1.9	69	92	0	221	27	21	21	30	1.98
4611613--4611676	21	3.1	20	76	14	67	82	0	15	1	0.74
4611603--4611671	30	2.3	29	82	4	84	85	1	11	1	0.73
4611955--4612142	98	2.0	95	86	5	263	25	15	9	48	1.75
4613063--4613280	89	2.4	89	91	0	337	27	22	25	24	2.00
4613505--4613662	44	3.6	43	78	9	158	26	21	24	27	1.99
4613512--4613676	89	1.9	88	82	8	210	28	19	25	26	1.99
4613972--4614075	44	2.4	44	83	3	122	30	20	24	25	1.98
4614196--4614279	44	1.9	44	85	4	116	34	13	21	30	1.91
4615251--4615317	33	2.1	32	88	5	100	14	22	32	29	1.94
4615674--4615719	18	2.6	18	89	0	65	30	6	0	63	1.20
4615881--4615957	36	2.1	38	83	13	99	35	7	1	55	1.37
4615881--4615957	38	2.1	36	83	13	95	35	7	1	55	1.37
4619102--4619141	20	2.0	20	90	0	62	27	5	5	62	1.37
4625186--4625215	15	2.0	15	93	0	51	33	0	10	56	1.32
4625708--4625970	135	1.9	135	89	0	409	26	16	11	44	1.83
4642549--4642626	27	2.9	27	76	14	88	43	17	14	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4642548--4642705	54	2.9	53	76	10	160	46	18	11	24	1.82
4642616--4642705	27	3.3	27	87	3	119	47	16	11	24	1.79
4649316--4649352	18	2.0	19	89	5	58	51	0	43	5	1.24
4652325--4652600	138	2.0	138	97	1	527	28	11	14	45	1.79
4657844--4657899	1	56.0	1	78	0	58	89	8	0	1	0.56
4657846--4657899	10	5.8	9	87	12	74	88	9	0	1	0.58
4657843--4657899	19	3.0	19	87	10	89	87	10	0	1	0.61
4665130--4665162	16	2.1	16	94	0	57	54	0	0	45	0.99
4665226--4665282	29	2.0	29	82	6	71	52	12	7	28	1.64
4677263--4677298	16	2.2	16	90	9	56	5	11	2	80	0.98
4677252--4677299	17	2.7	18	78	15	55	6	12	2	79	1.01
4686757--4686809	23	2.3	23	90	0	79	41	18	9	30	1.82
4691441--4691469	14	2.1	14	100	0	58	27	6	13	51	1.66
4692521--4692554	17	2.1	17	94	5	61	20	11	41	26	1.87
4706253--4706286	18	1.9	18	94	5	61	23	26	41	8	1.83
4717780--4717831	24	2.2	24	83	10	63	32	25	1	40	1.67
4718760--4718790	11	2.8	11	95	0	53	51	9	29	9	1.66
4721132--4721165	16	2.2	16	89	5	52	32	0	20	47	1.51
4722899--4722979	42	1.9	43	87	5	121	64	1	1	33	1.10
4726433--4726466	16	2.2	16	89	5	52	32	0	20	47	1.51
4728901--4728935	2	17.5	2	93	0	61	45	0	2	51	1.16
4734231--4734521	143	2.0	144	93	0	494	26	16	14	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4743533--4743629	39	2.5	39	84	0	131	30	8	20	40	1.82
4748408--4748441	15	2.3	15	89	0	50	41	0	50	8	1.34
4750850--4750946	37	2.6	37	86	1	133	20	11	26	41	1.86
4762054--4762096	16	2.5	18	74	14	54	44	30	0	25	1.55
4764761--4764804	11	3.9	11	82	5	52	34	0	2	63	1.07
4765450--4765721	50	5.5	50	84	3	325	26	20	30	22	1.99
4777461--4777539	39	2.0	39	87	4	115	26	6	21	45	1.75
4777474--4777561	39	2.3	38	86	9	124	30	3	20	45	1.67
4783385--4783411	13	2.1	13	100	0	54	40	14	22	22	1.90
4783662--4783711	23	2.1	24	85	3	66	66	6	10	18	1.42
4788857--4788918	24	2.6	24	77	10	63	22	9	24	43	1.83
4789079--4789249	32	5.4	32	88	0	218	22	20	19	37	1.94
4789246--4789305	22	2.7	22	78	0	66	16	21	18	43	1.88
4801258--4801431	86	2.0	87	97	1	332	45	18	6	29	1.74
4804435--4804555	44	2.7	45	81	13	151	23	26	22	27	2.00
4804302--4804858	217	2.6	217	90	1	864	28	23	20	28	1.99
4826740--4826785	21	2.1	23	88	8	69	58	4	8	28	1.47
4829917--4829976	20	3.0	20	87	0	84	10	26	21	41	1.85
4833095--4833153	10	5.7	10	82	7	73	52	18	0	28	1.46
4833084--4833155	32	2.2	34	78	14	89	51	18	0	30	1.46
4833084--4833155	22	3.4	22	77	11	87	51	18	0	30	1.46
4834891--4834930	20	2.0	20	100	0	80	35	10	10	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4835028--4835066	20	2.0	20	94	0	69	48	2	0	48	1.15
4840074--4840129	20	2.8	20	88	0	76	48	0	30	21	1.51
4841080--4841106	12	2.2	12	100	0	54	29	40	22	7	1.81
4843175--4843677	251	2.0	250	97	0	943	40	21	7	30	1.82
4848263--4848503	42	5.7	43	71	14	189	24	17	23	34	1.96
4848263--4848502	85	2.8	84	84	1	318	24	17	23	34	1.96
4851390--4851430	19	2.2	19	90	0	64	46	12	7	34	1.69
4861129--4861175	21	2.2	21	81	7	51	57	0	0	42	0.98
4861179--4861576	198	2.0	199	99	0	789	43	12	9	34	1.75
4862880--4862916	18	2.1	18	94	0	65	29	10	18	40	1.85
4863224--4863263	20	2.0	20	85	0	53	25	30	0	45	1.54
4864516--4864553	18	2.2	17	90	4	58	73	7	0	18	1.06
4864521--4864564	18	2.3	19	84	7	54	65	6	0	27	1.17
4864811--4864866	9	6.1	9	77	4	58	28	14	19	37	1.91
4864820--4864879	28	2.1	28	96	0	111	33	16	18	31	1.93
4864922--4864967	9	5.1	9	94	0	83	45	13	10	30	1.77
4874142--4874254	56	2.0	56	98	0	217	34	18	18	28	1.95
4885490--4885530	13	3.2	12	90	10	64	0	12	0	87	0.53
4885490--4885531	21	2.0	22	90	4	68	0	14	0	85	0.59
4886144--4886205	19	3.4	19	77	6	56	6	3	17	72	1.19
4893509--4893723	40	5.4	40	82	6	240	13	15	28	42	1.84
4893509--4893729	80	2.8	79	85	5	277	12	15	28	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4895817--4895941	50	2.5	50	80	12	141	38	16	12	33	1.85
4900463--4900509	21	2.2	22	88	3	69	21	17	38	23	1.93
4912611--4912847	89	2.7	88	77	3	242	25	4	13	56	1.56
4921558--4921608	5	9.6	5	81	8	57	23	19	0	56	1.42
4921561--4921598	16	2.4	16	90	0	58	23	21	0	55	1.44
4921558--4921608	11	4.8	10	81	11	57	23	19	0	56	1.42
4921602--4921690	18	4.7	18	77	13	90	25	8	3	61	1.41
4921965--4922007	21	2.0	21	82	8	52	30	9	0	60	1.28
4922202--4922269	5	12.6	5	80	9	64	17	19	2	60	1.49
4922217--4922269	11	4.9	10	84	13	52	18	16	3	60	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145