genome.fa.s13.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  42  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14943633--14943692	30	2.0	30	84	12	79	41	6	0	51	1.28
14947691--14947725	18	2.0	18	94	5	63	37	11	22	28	1.89
14954577--14954621	23	2.0	23	86	8	65	35	4	8	51	1.54
14954577--14954632	22	2.5	24	82	8	64	39	3	8	48	1.52
14955738--14955767	6	5.0	6	91	0	51	20	0	0	80	0.72
14957601--14957637	2	18.5	2	94	0	65	0	45	2	51	1.15
14970127--14970201	19	3.8	19	91	6	123	37	12	16	34	1.85
14975543--14975643	30	3.2	30	66	15	87	35	21	17	24	1.95
14975526--14975653	64	2.0	64	100	0	256	37	20	18	23	1.94
14985020--14985059	21	1.9	21	85	10	55	42	12	10	35	1.76
14989484--14989528	22	2.0	22	83	12	56	40	4	4	51	1.42
14995118--14995172	29	1.9	29	85	3	76	43	3	12	40	1.60
14995669--14995725	24	2.4	24	88	5	80	15	33	15	35	1.90
14995785--14996035	25	10.2	25	71	10	151	18	25	20	34	1.96
14995793--14995929	24	5.5	24	71	13	82	17	25	22	34	1.96
14995784--14996010	48	4.6	49	72	13	153	18	25	20	35	1.95
14996318--14996342	13	1.9	13	100	0	50	32	4	24	40	1.73
14997028--14997071	21	2.2	20	83	4	52	52	6	20	20	1.69
15008959--15009028	35	2.0	35	97	0	131	28	12	25	32	1.93
15019784--15019814	6	5.0	6	96	4	53	64	0	19	16	1.29
15019777--15019814	12	3.1	13	88	11	62	65	0	18	15	1.27
15028027--15028352	89	3.7	88	82	5	352	28	22	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15028027--15028353	178	1.8	178	83	1	431	28	22	22	26	1.99
15028344--15028786	133	3.3	133	91	2	696	28	20	25	25	1.99
15029299--15029331	16	2.1	16	88	5	50	48	39	6	6	1.53
15032216--15032282	32	2.1	32	85	0	89	26	11	23	37	1.90
15035904--15035955	24	2.2	24	83	10	63	15	26	25	32	1.95
15039927--15040236	161	1.9	161	98	0	602	28	12	20	38	1.89
15046029--15046112	36	2.3	36	91	0	132	34	17	17	29	1.94
15046065--15046665	134	4.5	134	79	2	618	38	13	16	31	1.88
15050583--15050620	19	2.0	19	100	0	76	47	10	21	21	1.80
15058321--15058387	24	3.1	24	68	31	78	35	11	16	35	1.86
15058341--15058371	16	1.9	16	100	0	62	38	0	19	41	1.51
15061508--15061753	129	2.0	122	82	7	296	44	6	6	42	1.55
15063675--15063790	37	3.1	37	91	1	178	30	12	18	39	1.87
15068027--15068064	16	2.3	16	95	4	67	52	10	7	28	1.64
15073684--15073715	16	2.0	16	93	0	55	34	0	0	65	0.93
15073704--15073753	12	4.3	11	79	18	57	46	2	2	50	1.24
15073714--15073764	24	2.0	25	81	7	59	41	1	7	49	1.43
15074667--15074757	43	2.1	43	93	2	157	24	23	16	36	1.94
15083830--15083866	19	2.1	19	85	10	51	24	8	10	56	1.60
15086380--15086407	5	5.6	5	100	0	56	60	0	0	39	0.97
15086371--15086413	15	2.8	15	83	16	61	55	0	0	44	0.99
15092104--15092163	19	3.1	19	83	7	68	43	1	3	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15094946--15095013	26	2.7	26	82	10	81	42	22	20	14	1.88
15095043--15095141	26	3.9	26	80	2	103	39	21	19	20	1.93
15099050--15099074	13	1.9	13	100	0	50	72	0	0	28	0.86
15100436--15100633	44	4.6	43	70	12	138	23	21	24	30	1.99
15100477--15100668	40	4.6	40	72	14	165	23	21	25	29	1.99
15100409--15100668	127	2.1	127	96	0	477	23	20	26	30	1.98
15100826--15101187	50	7.3	48	68	8	206	25	23	20	30	1.99
15100742--15101247	100	5.1	100	84	3	628	26	22	21	29	1.99
15100742--15101255	199	2.6	200	89	2	777	25	23	21	29	1.99
15100863--15101236	50	7.5	50	68	9	228	25	21	21	31	1.98
15102112--15102216	47	2.3	46	79	8	113	57	5	10	26	1.55
15102488--15102520	15	2.2	15	100	0	66	6	12	0	81	0.85
15108317--15108373	29	1.9	30	86	10	82	14	24	7	54	1.64
15111278--15111315	19	2.1	19	85	14	53	21	0	5	73	1.02
15111292--15111342	26	2.0	26	84	0	66	29	3	1	64	1.22
15111289--15111346	26	2.3	25	77	8	64	25	3	1	68	1.14
15114724--15114850	42	3.0	43	70	15	109	25	17	27	29	1.97
15125244--15125335	30	3.0	32	81	6	93	20	13	14	52	1.74
15125285--15125341	30	1.9	30	88	0	87	22	14	15	47	1.82
15130064--15130108	21	2.1	21	100	0	90	62	8	0	28	1.25
15131922--15132005	24	3.5	24	85	1	116	20	22	4	52	1.65
15131926--15132020	48	2.0	49	89	4	149	17	21	6	54	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15131989--15132123	41	3.3	41	91	0	216	19	21	5	53	1.66
15153659--15153689	7	4.4	7	91	0	53	83	3	12	0	0.75
15156115--15156321	3	69.0	3	100	0	414	33	0	0	66	0.92
15156492--15156527	16	2.2	16	95	0	63	38	2	8	50	1.47
15156648--15156686	10	3.8	10	89	3	51	41	0	5	53	1.23
15162190--15162228	15	2.7	14	88	7	60	79	7	2	10	1.02
15162206--15162236	10	3.2	10	95	4	55	83	6	0	9	0.79
15163076--15163135	12	5.1	12	77	4	59	75	0	15	10	1.05
15163076--15163142	31	2.2	31	86	5	91	74	0	14	10	1.07
15164369--15164583	86	2.5	86	79	7	263	27	20	24	26	1.99
15164595--15164735	42	3.4	41	67	14	117	26	19	24	28	1.99
15164370--15164814	222	2.0	224	86	4	621	28	20	24	26	1.99
15164641--15164776	43	3.2	43	65	8	105	30	23	19	25	1.98
15164582--15164863	86	3.3	85	89	3	394	29	21	23	25	1.99
15164582--15164903	86	3.8	88	84	6	355	29	20	23	26	1.99
15165036--15165234	44	4.6	44	71	10	167	30	19	22	27	1.98
15164902--15165342	129	3.4	129	89	1	636	29	19	21	29	1.98
15165286--15165463	95	1.9	95	89	2	277	26	15	24	32	1.96
15169702--15169865	87	1.9	87	100	0	328	20	31	9	39	1.84
15170874--15170910	14	2.6	14	91	4	56	8	10	2	78	1.06
15175595--15175678	41	2.0	41	95	4	152	45	1	7	46	1.38
15177123--15177176	24	2.3	23	90	9	83	38	9	7	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15177125--15177176	25	2.1	25	92	3	88	36	9	7	46	1.66
15179802--15179829	2	14.0	2	100	0	56	50	0	0	50	1.00
15179753--15179954	75	2.7	75	100	0	404	49	1	11	37	1.49
15179877--15179904	2	14.0	2	100	0	56	50	0	0	50	1.00
15181280--15181756	44	10.8	45	67	13	197	27	24	18	29	1.98
15181326--15181815	132	3.7	132	92	0	800	28	24	18	29	1.98
15181819--15182737	89	10.3	89	94	0	1489	28	24	17	30	1.97
15183618--15183642	13	1.9	13	100	0	50	56	0	24	20	1.43
15184987--15185028	18	2.3	18	87	0	57	61	7	19	11	1.52
15186893--15186934	19	2.2	19	83	8	50	40	9	21	28	1.84
15186964--15186989	13	2.0	13	100	0	52	46	15	7	30	1.74
15197747--15197863	62	1.9	59	86	5	162	43	1	4	50	1.31
15204935--15204967	14	2.3	15	94	5	59	15	0	6	78	0.93
15210883--15210942	29	2.1	29	84	6	77	31	10	15	43	1.79
15214052--15214101	18	2.9	18	71	14	52	16	46	0	38	1.47
15227897--15228017	59	2.1	59	85	3	163	32	3	9	55	1.48
15229206--15229266	30	2.0	30	90	0	95	19	31	32	16	1.94
15235085--15235138	6	9.0	6	89	0	81	12	3	1	81	0.91
15235085--15235138	18	3.0	18	94	0	90	12	3	1	81	0.91
15236104--15236128	9	2.8	9	100	0	50	84	8	0	8	0.79
15236952--15237009	30	1.9	30	92	0	98	25	31	29	13	1.94
15242969--15243046	41	1.9	41	86	0	111	29	15	7	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15246489--15246527	19	2.1	19	95	0	69	28	0	0	71	0.86
15250433--15250647	107	2.0	108	99	0	423	40	1	9	48	1.46
15251771--15251819	24	2.0	24	100	0	98	36	8	20	34	1.82
15254027--15254143	58	2.0	59	93	1	200	55	9	11	23	1.64
15254056--15254143	26	2.9	32	66	23	82	56	9	12	21	1.63
15257563--15257693	61	2.1	61	81	2	147	44	6	12	36	1.68
15257562--15257649	30	2.8	31	81	8	108	40	4	13	40	1.65
15260013--15260066	24	2.2	25	87	9	76	57	0	0	42	0.98
15260013--15260066	25	2.2	24	86	3	72	57	0	0	42	0.98
15262995--15263124	46	2.9	45	91	3	201	33	15	21	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145