genome.fa.s13.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  90  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30847705--30847735	13	2.3	13	94	5	53	64	0	0	35	0.94
30849705--30850138	153	2.9	150	85	4	606	29	10	8	52	1.65
30850281--30850722	156	2.8	155	87	6	617	30	10	7	51	1.64
30852086--30852124	20	2.0	20	89	0	60	33	5	0	61	1.18
30855999--30856044	23	2.0	23	86	0	65	50	0	0	50	1.00
30860980--30861034	27	2.0	27	89	6	85	21	16	29	32	1.95
30860987--30861109	27	4.6	27	72	6	88	28	18	24	28	1.98
30865299--30865370	27	2.7	27	84	0	81	31	22	26	19	1.97
30867033--30867099	34	1.9	35	87	3	100	31	8	14	44	1.76
30876765--30876809	18	2.5	18	78	7	56	42	17	2	37	1.62
30885445--30885487	3	14.3	3	100	0	86	32	0	0	67	0.91
30885478--30885730	124	2.0	126	98	1	492	22	11	23	43	1.85
30894208--30894268	25	2.4	26	81	8	72	32	16	13	37	1.87
30894585--30894637	18	2.9	18	82	0	70	41	20	0	37	1.53
30895358--30895394	8	4.3	9	83	13	51	32	21	10	35	1.88
30904148--30904226	28	2.8	28	73	7	79	31	26	17	24	1.97
30904604--30904782	27	6.7	26	79	11	159	15	17	21	44	1.86
30904615--30904782	54	3.1	53	88	1	246	14	19	20	45	1.85
30904614--30904782	80	2.1	81	84	5	218	14	18	21	44	1.86
30907469--30907547	28	2.8	28	75	7	79	31	25	16	26	1.96
30909795--30909865	28	2.6	27	84	10	90	30	26	11	30	1.91
30910634--30910974	27	12.6	27	83	2	398	17	19	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30915634--30915781	44	3.3	45	77	10	142	11	28	4	55	1.55
30924158--30924609	224	2.0	225	99	0	897	32	25	14	27	1.94
30928279--30928423	28	5.2	28	69	14	95	32	14	24	28	1.94
30940449--30940487	19	2.1	19	100	0	78	15	30	23	30	1.95
30944717--30944748	2	16.0	2	100	0	64	50	0	0	50	1.00
30944939--30945036	48	2.1	48	98	1	189	26	33	6	33	1.81
30947782--30947810	14	2.1	14	100	0	58	13	0	13	72	1.13
30959297--30959526	45	5.1	45	85	2	309	29	16	24	30	1.96
30959297--30959607	90	3.5	90	82	5	310	28	18	23	28	1.98
30959483--30959650	89	1.9	88	86	3	239	29	24	22	23	1.99
30959961--30960241	44	6.2	44	69	14	144	30	21	19	28	1.97
30959955--30960402	227	2.0	224	81	3	531	33	19	19	27	1.96
30960726--30960806	22	3.5	22	71	21	74	39	43	2	14	1.59
30961168--30961205	16	2.5	15	91	8	60	10	5	5	78	1.06
30962046--30962074	14	2.1	14	100	0	58	13	0	13	72	1.13
30964860--30964891	14	2.2	15	94	5	57	71	6	0	21	1.07
30966990--30967025	16	2.2	16	90	0	54	63	0	36	0	0.94
30967435--30967512	40	2.0	40	84	5	104	38	2	25	33	1.70
30976220--30976245	13	2.0	13	100	0	52	38	0	0	61	0.96
30976927--30976986	21	2.9	20	80	7	75	16	23	25	35	1.95
30991733--30991763	9	3.4	9	90	0	53	25	12	22	38	1.90
30991817--30991853	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30993057--30993099	17	2.5	16	81	7	50	34	0	4	60	1.17
30993425--30993467	21	2.1	20	91	4	68	48	11	0	39	1.40
30996213--30996258	14	3.2	14	77	22	51	30	2	2	65	1.16
31006000--31006055	22	2.5	23	82	2	69	51	1	1	44	1.22
31006031--31006070	16	2.5	16	91	0	62	47	2	7	42	1.45
31006059--31006268	68	3.1	68	95	1	379	40	4	8	45	1.56
31006211--31006238	9	3.1	9	100	0	56	32	0	10	57	1.33
31006335--31006378	24	1.9	24	90	9	74	61	2	0	36	1.09
31031831--31031954	64	2.0	63	91	1	203	36	18	12	32	1.89
31034591--31034744	69	2.2	70	78	6	170	54	3	8	33	1.47
31037044--31037146	2	51.5	2	78	11	95	48	6	0	43	1.36
31037046--31037180	68	2.0	68	97	0	252	47	10	1	40	1.47
31046457--31046515	31	1.9	30	86	10	84	25	5	13	55	1.58
31047073--31047097	13	1.9	13	100	0	50	24	8	0	68	1.16
31052769--31053478	354	2.0	354	100	0	1420	32	14	20	32	1.92
31053835--31053963	57	2.3	56	85	4	161	50	6	17	25	1.69
31053937--31053981	6	7.3	6	90	5	72	71	0	13	15	1.15
31055779--31055913	40	3.4	41	76	11	138	25	20	24	30	1.98
31057567--31057625	29	2.0	29	96	0	109	37	8	0	54	1.31
31057574--31057635	29	2.1	29	87	0	88	38	8	0	53	1.31
31063880--31063914	10	3.4	10	96	4	61	28	0	71	0	0.86
31064815--31064856	22	1.9	22	95	0	75	33	9	2	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31066068--31066113	22	2.1	22	84	8	58	23	30	23	21	1.99
31066535--31066572	19	2.0	20	89	5	60	73	5	2	18	1.14
31066513--31066565	27	2.0	27	85	7	72	75	3	1	18	1.05
31068834--31068938	55	1.9	55	90	3	167	36	19	11	33	1.87
31074939--31074963	10	2.5	10	100	0	50	92	0	8	0	0.40
31079683--31079708	6	4.3	6	100	0	52	53	0	0	46	1.00
31081196--31081234	11	3.5	11	86	6	53	58	12	2	25	1.47
31081579--31081604	2	13.0	2	100	0	52	50	0	0	50	1.00
31087609--31087784	87	2.0	87	93	0	298	36	21	14	27	1.92
31087976--31088004	15	2.0	15	93	6	51	20	27	0	51	1.47
31095413--31095459	10	4.6	10	85	12	51	34	2	4	59	1.29
31099082--31099124	21	2.0	22	86	4	61	16	13	20	48	1.80
31115374--31115409	7	5.0	7	86	6	54	41	0	0	58	0.98
31115372--31115430	15	3.8	15	76	13	57	37	1	0	61	1.07
31115368--31115417	22	2.3	22	96	3	93	38	0	0	62	0.96
31116642--31116677	7	5.0	7	86	6	54	41	0	0	58	0.98
31116640--31116698	15	3.8	15	76	13	57	37	1	0	61	1.07
31116636--31116685	22	2.3	22	96	3	93	38	0	0	62	0.96
31124439--31124511	38	1.9	38	100	0	146	43	5	5	45	1.50
31126974--31127059	45	1.9	45	100	0	172	33	9	11	45	1.73
31132110--31132139	15	2.0	15	93	0	51	23	13	20	43	1.86
31162281--31162319	18	2.2	18	86	9	53	15	0	5	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31162997--31163141	71	2.0	71	100	0	290	40	9	16	33	1.81
31170141--31170192	25	2.1	25	92	0	86	40	23	13	23	1.89
31174060--31174095	18	2.1	18	89	5	56	47	0	5	47	1.25
31181968--31182004	18	2.0	19	85	15	51	45	8	5	40	1.56
31182555--31182584	2	15.0	2	92	0	51	46	0	0	53	1.00
31182564--31183017	226	2.0	227	99	0	901	37	15	7	39	1.77
31183363--31183420	25	2.3	25	87	0	80	43	22	12	22	1.86
31185010--31185044	17	2.1	16	89	5	52	31	0	5	62	1.18
31189069--31189320	43	6.0	43	83	5	316	23	16	34	25	1.95
31192951--31193317	27	13.6	27	82	5	352	40	18	17	23	1.91
31193191--31193362	27	6.5	26	76	9	93	37	16	21	24	1.93
31193384--31193441	24	2.4	24	91	0	89	18	8	25	46	1.78
31193510--31193566	27	2.1	27	84	12	73	21	26	21	31	1.98
31193613--31193737	32	3.9	32	82	0	142	21	20	21	36	1.95
31193613--31193737	64	2.0	64	83	0	160	21	20	21	36	1.95
31195628--31195676	24	2.0	24	96	0	89	53	12	6	28	1.62
31203331--31203754	211	2.0	211	97	0	794	31	16	18	33	1.93
31212596--31212683	41	2.1	41	97	0	167	23	25	20	30	1.98
31217999--31218057	22	2.7	21	82	7	73	28	11	5	54	1.58
31217999--31218038	21	1.9	21	94	0	71	30	12	2	55	1.50
31217999--31218057	21	2.8	20	76	19	57	28	11	5	54	1.58
31224578--31224602	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31241340--31241402	28	2.2	28	94	0	108	17	9	17	55	1.67
31245794--31245981	105	1.8	105	85	3	245	28	27	17	27	1.97
31245805--31246016	105	2.0	105	80	7	234	25	25	17	31	1.97
31250509--31250539	12	2.6	12	94	0	53	58	12	0	29	1.35
31256720--31256880	46	3.6	46	88	2	229	35	16	19	28	1.93
31258258--31258299	22	1.9	23	85	9	61	50	4	23	21	1.68
31261914--31262174	46	5.7	46	90	0	416	34	14	21	29	1.93
31271006--31271031	9	2.9	9	100	0	52	30	23	11	34	1.90
31280869--31280894	13	2.0	13	100	0	52	46	7	7	38	1.61
31281793--31281828	17	2.1	17	89	5	54	19	2	11	66	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145