genome.fa.s13.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  110  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36807640--36807679	21	1.9	21	84	0	53	75	2	2	20	1.04
36827996--36828025	11	2.6	11	94	5	51	90	0	10	0	0.47
36827996--36828025	15	2.0	15	93	0	51	90	0	10	0	0.47
36829734--36829774	7	5.7	7	88	5	55	56	0	2	41	1.13
36829720--36829770	21	2.5	21	72	15	52	54	0	5	39	1.24
36830151--36830765	124	5.0	124	99	0	1212	29	14	21	34	1.93
36832075--36832138	10	6.4	10	71	10	51	60	1	0	37	1.06
36832083--36832122	21	1.9	21	89	0	62	62	0	0	37	0.95
36832075--36832139	31	2.1	31	88	5	96	61	1	0	36	1.05
36832135--36832168	17	1.9	18	88	5	52	64	0	11	23	1.26
36832183--36832224	22	1.9	22	95	0	75	33	0	35	30	1.58
36832196--36832254	30	2.0	30	93	0	100	33	0	35	30	1.58
36832226--36832271	22	2.1	22	100	0	92	39	0	30	30	1.57
36833100--36833156	9	5.8	10	73	22	50	66	1	1	29	1.12
36834024--36834053	14	2.1	15	93	6	53	56	0	0	43	0.99
36848450--36848522	9	7.8	9	70	18	51	35	0	2	61	1.10
36849219--36849278	30	1.9	32	87	12	90	46	0	3	50	1.18
36857245--36857279	12	2.8	13	86	8	54	42	17	8	31	1.79
36866272--36866312	20	2.0	20	85	0	55	29	2	0	68	1.03
36874239--36874348	44	2.5	44	86	0	148	33	21	19	25	1.97
36874249--36875075	143	5.8	143	83	2	957	29	21	18	31	1.97
36874272--36875075	286	2.8	286	85	1	1056	28	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36876332--36876420	45	2.0	45	97	0	169	33	21	21	23	1.97
36887901--36887956	27	2.1	27	83	12	71	66	1	0	32	1.03
36889007--36889046	20	2.0	20	85	0	53	25	10	12	52	1.70
36888992--36889058	34	1.9	35	87	3	100	29	8	13	47	1.73
36891243--36891277	16	2.2	16	89	0	52	54	0	5	40	1.24
36895971--36896040	22	3.0	22	67	18	52	31	7	2	58	1.40
36903763--36903793	5	6.0	5	92	7	53	80	0	0	19	0.71
36908850--36909013	78	2.1	79	98	1	321	46	1	9	41	1.47
36910146--36910183	19	2.1	17	90	9	58	31	2	0	65	1.06
36910190--36910236	23	2.0	23	91	0	76	29	12	25	31	1.93
36911079--36911149	36	2.0	36	97	0	133	40	8	14	36	1.76
36911378--36911423	21	2.2	21	88	0	65	2	47	19	30	1.61
36913773--36913844	14	5.5	13	72	18	60	40	36	0	23	1.55
36913777--36913832	21	2.6	21	91	2	94	37	39	0	23	1.55
36913772--36913829	7	8.1	7	82	3	71	36	37	0	25	1.57
36914014--36914066	7	7.4	7	82	2	61	33	41	1	22	1.65
36914100--36914191	39	2.4	39	83	5	123	48	22	2	26	1.62
36914127--36914159	14	2.4	14	89	0	57	51	27	0	21	1.48
36914498--36914719	96	2.3	96	97	1	419	28	19	18	33	1.96
36916649--36916678	14	2.2	14	94	5	53	6	13	0	80	0.91
36916747--36916772	10	2.6	10	100	0	52	84	7	7	0	0.77
36917776--36917844	29	2.3	29	85	5	84	47	15	14	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36919852--36919923	29	2.5	28	81	16	78	62	6	5	25	1.42
36942605--36942666	27	2.4	25	84	10	79	41	3	0	54	1.16
36942778--36942957	19	9.3	19	71	22	126	31	1	12	54	1.48
36942821--36943018	61	3.4	59	81	12	264	31	1	11	56	1.41
36942901--36942967	35	1.9	35	96	0	125	35	0	8	55	1.32
36942821--36943047	115	2.0	115	94	1	402	32	0	11	55	1.42
36942997--36943037	19	2.2	19	90	0	64	34	0	17	48	1.47
36942936--36943097	80	2.0	79	92	1	270	30	0	12	56	1.42
36943090--36943207	56	2.0	59	83	6	152	33	0	11	53	1.44
36943324--36943360	16	2.4	16	90	4	58	32	2	5	59	1.34
36943448--36943506	27	2.2	27	84	0	73	28	33	18	18	1.95
36946385--36946692	110	2.8	109	88	2	442	32	19	17	30	1.95
36947174--36947223	15	3.3	15	94	0	91	58	0	6	36	1.23
36947174--36947225	3	17.3	3	83	0	68	59	0	5	34	1.21
36948811--36948835	13	1.9	13	100	0	50	32	36	0	32	1.58
36950105--36950195	45	2.0	46	89	4	141	30	1	0	68	0.97
36950158--36950185	14	2.0	14	100	0	56	14	0	0	85	0.59
36951454--36951485	15	2.1	15	94	0	55	62	9	6	21	1.47
36953981--36954042	9	6.7	9	79	3	52	20	41	3	33	1.69
36954001--36954026	10	2.6	10	100	0	52	30	46	0	23	1.53
36965934--36965958	12	2.1	12	100	0	50	24	36	24	16	1.94
36966119--36966194	9	8.4	9	86	0	107	43	23	7	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36966307--36966343	13	2.8	13	100	0	74	10	0	48	40	1.38
36967208--36967267	27	2.2	27	93	0	102	38	6	0	55	1.27
36971695--36971724	5	6.0	5	92	0	51	56	0	3	40	1.16
36977489--36977516	14	2.0	14	100	0	56	50	0	7	42	1.30
36979109--36979160	24	2.1	25	82	7	61	30	9	7	51	1.62
36990092--36990116	10	2.5	10	100	0	50	8	24	8	60	1.52
36992226--36992251	8	3.2	8	100	0	52	38	34	0	26	1.57
36997645--36997698	15	3.7	15	73	12	58	62	5	5	25	1.39
36997635--36997693	28	2.1	28	100	0	118	62	6	6	23	1.44
37002356--37002411	17	3.3	16	80	9	58	48	0	8	42	1.34
37003634--37003731	48	2.0	48	98	0	187	36	7	19	36	1.79
37003706--37003742	14	2.8	13	88	8	56	43	5	13	37	1.67
37004003--37004341	34	10.0	34	87	4	425	20	23	16	39	1.92
37003999--37004329	35	9.7	34	87	4	427	19	24	17	38	1.92
37003999--37004342	136	2.5	137	86	4	473	19	23	16	39	1.91
37009442--37009726	142	2.0	143	97	2	538	41	8	6	43	1.61
37018366--37018392	13	2.1	13	100	0	54	59	0	0	40	0.98
37019804--37019875	32	2.2	34	80	16	89	63	2	5	27	1.30
37020224--37020377	82	1.9	82	81	5	186	48	8	6	37	1.60
37021230--37021254	2	12.5	2	100	0	50	48	0	0	52	1.00
37024303--37024376	38	1.9	38	86	8	105	29	22	9	37	1.86
37028648--37028769	48	2.5	48	74	2	120	38	18	16	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37029381--37029441	29	2.1	29	96	0	113	16	29	36	18	1.92
37034179--37034231	27	2.0	27	81	7	63	33	9	13	43	1.76
37037356--37037403	25	1.9	25	91	0	78	47	6	12	33	1.66
37038664--37038702	19	2.0	21	90	10	64	10	12	0	76	1.01
37039407--37039445	19	2.0	21	90	10	64	10	12	0	76	1.01
37038029--37039515	743	2.0	744	99	0	2967	36	22	15	25	1.93
37043704--37043762	27	2.2	27	90	3	93	16	16	23	42	1.89
37043803--37043954	27	5.4	27	72	14	119	21	17	18	43	1.88
37052058--37052212	53	2.9	53	82	0	202	38	13	20	27	1.90
37052341--37052544	28	7.3	27	68	18	96	30	14	25	28	1.95
37052330--37052544	56	3.8	55	78	9	202	32	14	25	27	1.95
37052330--37052419	28	3.2	28	73	16	87	37	11	24	26	1.89
37052494--37052578	31	2.9	28	77	10	82	30	20	25	23	1.98
37053260--37053380	5	23.8	5	90	9	192	57	0	0	39	0.99
37061731--37061780	22	2.3	22	100	0	100	28	32	0	40	1.57
37062762--37062786	7	3.6	7	100	0	50	28	0	12	60	1.32
37063438--37063472	18	1.9	18	88	0	52	25	34	8	31	1.86
37064906--37065244	126	2.7	124	90	2	534	33	20	15	30	1.94
37067053--37067139	45	1.9	45	92	0	147	33	26	17	22	1.96
37067143--37067335	51	3.8	50	78	6	210	30	27	18	23	1.98
37067150--37067334	101	1.8	101	87	3	273	30	27	17	23	1.97
37077326--37077674	43	8.2	43	85	5	412	32	19	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077347--37077674	127	2.6	126	85	6	425	32	19	23	24	1.97
37078129--37078165	12	3.1	12	96	0	65	2	40	16	40	1.62
37078150--37078218	21	3.3	21	85	0	93	1	42	20	36	1.61
37082711--37082866	9	17.8	9	83	7	189	33	1	17	46	1.60
37088556--37089090	227	2.4	221	76	8	522	25	23	19	31	1.98
37088556--37089095	114	4.8	111	73	9	439	25	24	18	31	1.98
37089210--37089442	112	2.1	113	83	4	292	24	22	21	31	1.98
37089758--37089782	12	2.1	12	100	0	50	92	0	8	0	0.40
37091672--37091723	19	2.7	20	79	11	63	38	3	0	57	1.17
37091672--37091727	10	5.7	10	76	4	51	35	3	0	60	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145